BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00033968
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD89689.1| RNA polymerase II, second largest subunit [Ilex ...   235   3e-60
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   234   5e-60
gb|AAS86833.1| RNA polymerase II second largest subunit, partial...   234   5e-60
emb|CAD88602.1| RNA polymerase II second largest subunit [Alangi...   234   7e-60
gb|AFV74908.1| RNA polymerase II second largest subunit, partial...   233   9e-60

>emb|CAD89689.1| RNA polymerase II, second largest subunit [Ilex x meserveae]
          Length = 272

 Score =  235 bits (599), Expect = 3e-60
 Identities = 121/160 (75%), Positives = 125/160 (78%)
 Frame = -1

Query: 482 DPDMXXXXXXXXXXXVDVNTEVGVVRDIRLKELCIYTDCGRCSRPLFIVEKQRLLIKKSH 303
           DPDM           VDVNTEVGVVRDIRLKEL IYTD GRCSRPLFIVEKQRLLIKK  
Sbjct: 64  DPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 123

Query: 302 IQALQQRETHEEGGWHDLVSNGFXXXXXXXXXXXXXXXXXXSDLVSARLNPEEAYSDTYT 123
           I+ALQQRE+ EEGGWH+LVS GF                  +DLVSARLNPEEAYSDTYT
Sbjct: 124 IEALQQRESPEEGGWHELVSKGFIEYIGTEEEETTMISMTINDLVSARLNPEEAYSDTYT 183

Query: 122 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 3
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 184 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 223


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  234 bits (597), Expect = 5e-60
 Identities = 120/160 (75%), Positives = 125/160 (78%)
 Frame = -1

Query: 482  DPDMXXXXXXXXXXXVDVNTEVGVVRDIRLKELCIYTDCGRCSRPLFIVEKQRLLIKKSH 303
            DPDM           VDVNTEVGVVRDIRLKEL IYTD GRCSRPLFIVEKQRLLIK+  
Sbjct: 582  DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKD 641

Query: 302  IQALQQRETHEEGGWHDLVSNGFXXXXXXXXXXXXXXXXXXSDLVSARLNPEEAYSDTYT 123
            IQALQQRET E+GGWHDLV+ GF                  +DLVSARLNPEEAYS+TYT
Sbjct: 642  IQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYT 701

Query: 122  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 3
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 702  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 741


>gb|AAS86833.1| RNA polymerase II second largest subunit, partial [Rhododendron
           macrophyllum]
          Length = 549

 Score =  234 bits (597), Expect = 5e-60
 Identities = 120/160 (75%), Positives = 125/160 (78%)
 Frame = -1

Query: 482 DPDMXXXXXXXXXXXVDVNTEVGVVRDIRLKELCIYTDCGRCSRPLFIVEKQRLLIKKSH 303
           DPDM           VDVNTEVGVVRDIRLKEL IYTD GRCSRPLFIVEKQRLLIK+  
Sbjct: 67  DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKD 126

Query: 302 IQALQQRETHEEGGWHDLVSNGFXXXXXXXXXXXXXXXXXXSDLVSARLNPEEAYSDTYT 123
           IQALQQRET E+GGWHDLV+ GF                  +DLVSARLNPEEAYS+TYT
Sbjct: 127 IQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYT 186

Query: 122 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 3
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 187 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 226


>emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
          Length = 540

 Score =  234 bits (596), Expect = 7e-60
 Identities = 120/160 (75%), Positives = 124/160 (77%)
 Frame = -1

Query: 482 DPDMXXXXXXXXXXXVDVNTEVGVVRDIRLKELCIYTDCGRCSRPLFIVEKQRLLIKKSH 303
           DPDM           VDVNTEVGVVRDIRLKEL IYTD GRCSRPLFIVEKQRLLIKK  
Sbjct: 67  DPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 126

Query: 302 IQALQQRETHEEGGWHDLVSNGFXXXXXXXXXXXXXXXXXXSDLVSARLNPEEAYSDTYT 123
           IQ LQQRET EEGGWHDLV+ GF                  +DLVSAR+NPEEAYS+TYT
Sbjct: 127 IQMLQQRETPEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARINPEEAYSETYT 186

Query: 122 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 3
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 187 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 226


>gb|AFV74908.1| RNA polymerase II second largest subunit, partial [Balanophora
           fungosa]
          Length = 277

 Score =  233 bits (595), Expect = 9e-60
 Identities = 119/160 (74%), Positives = 125/160 (78%)
 Frame = -1

Query: 482 DPDMXXXXXXXXXXXVDVNTEVGVVRDIRLKELCIYTDCGRCSRPLFIVEKQRLLIKKSH 303
           DPDM           VDVNTEVGVVRDIRLKEL IYTD GRCSRPLFIVEKQRLLIKK  
Sbjct: 61  DPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 302 IQALQQRETHEEGGWHDLVSNGFXXXXXXXXXXXXXXXXXXSDLVSARLNPEEAYSDTYT 123
           IQALQQRE+ +EGGWHDLV+ GF                  +DL+SARLNPEEAYS+TYT
Sbjct: 121 IQALQQRESPDEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLISARLNPEEAYSETYT 180

Query: 122 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 3
           HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 181 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 220