BLASTX nr result

ID: Lithospermum22_contig00033211 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00033211
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31778.3| unnamed protein product [Vitis vinifera]               62   5e-08
ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    62   5e-08
emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]    61   8e-08
gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase fami...    59   5e-07
ref|XP_002520585.1| dead box ATP-dependent RNA helicase, putativ...    56   3e-06

>emb|CBI31778.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
 Frame = +2

Query: 2   KGRNPLALVLAATRELAREVDKQAI**DC**CRY-----TL*IWRCDHFTPYECARSW-C 163
           +GRNPLALVLA TRELAR+V+K+        C       TL ++     +    +  +  
Sbjct: 186 RGRNPLALVLAPTRELARQVEKEF-------CESAPNLDTLCVYGGTPISRQMNSLDYGV 238

Query: 164 *CVVGTPGQVIHLIKRSALNLSDIQF-VLYEADPMPNWIFQE 286
             VVGTPG++I LIKR ALNLS++QF VL EAD M    F+E
Sbjct: 239 DVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEE 280



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
 Frame = +3

Query: 51  LVKLTNKQFDETASDVGTLCEYGGVTISRHMSALGRGVDVLLGHLVRLFI*SKEVH*TCQ 230
           L +   K+F E+A ++ TLC YGG  ISR M++L  GVDV++G   R+    K       
Sbjct: 201 LARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDYGVDVVVGTPGRIIDLIKRG--ALN 258

Query: 231 IFSLFYMKLIRC----PIGFSKNVKTMLENIHKDHETLMFSATM 350
           +  + ++ L        +GF ++V+ +LE + ++ +++MFSATM
Sbjct: 259 LSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFSATM 302


>ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
           vinifera]
          Length = 666

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
 Frame = +2

Query: 2   KGRNPLALVLAATRELAREVDKQAI**DC**CRY-----TL*IWRCDHFTPYECARSW-C 163
           +GRNPLALVLA TRELAR+V+K+        C       TL ++     +    +  +  
Sbjct: 186 RGRNPLALVLAPTRELARQVEKEF-------CESAPNLDTLCVYGGTPISRQMNSLDYGV 238

Query: 164 *CVVGTPGQVIHLIKRSALNLSDIQF-VLYEADPMPNWIFQE 286
             VVGTPG++I LIKR ALNLS++QF VL EAD M    F+E
Sbjct: 239 DVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEE 280



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
 Frame = +3

Query: 51  LVKLTNKQFDETASDVGTLCEYGGVTISRHMSALGRGVDVLLGHLVRLFI*SKEVH*TCQ 230
           L +   K+F E+A ++ TLC YGG  ISR M++L  GVDV++G   R+    K       
Sbjct: 201 LARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDYGVDVVVGTPGRIIDLIKRG--ALN 258

Query: 231 IFSLFYMKLIRC----PIGFSKNVKTMLENIHKDHETLMFSATM 350
           +  + ++ L        +GF ++V+ +LE + ++ +++MFSATM
Sbjct: 259 LSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFSATM 302


>emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +2

Query: 2   KGRNPLALVLAATRELAREVDKQAI**DC**CRYTL*IWRCDHFTPYECARSW-C*CVVG 178
           +GRNPLALVLA TRELAR+V+K+    +      TL ++     +    +  +    VVG
Sbjct: 186 RGRNPLALVLAPTRELARQVEKEFX--ESAPNLDTLCVYGGTPISRQMNSLDYGVDVVVG 243

Query: 179 TPGQVIHLIKRSALNLSDIQF-VLYEADPMPNWIFQE 286
           TPG++I LIKR ALNLS++QF VL EAD M    F+E
Sbjct: 244 TPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEE 280



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
 Frame = +3

Query: 51  LVKLTNKQFDETASDVGTLCEYGGVTISRHMSALGRGVDVLLGHLVRLFI*SKEVH*TCQ 230
           L +   K+F E+A ++ TLC YGG  ISR M++L  GVDV++G   R+    K       
Sbjct: 201 LARQVEKEFXESAPNLDTLCVYGGTPISRQMNSLDYGVDVVVGTPGRIIDLIKRG--ALN 258

Query: 231 IFSLFYMKLIRC----PIGFSKNVKTMLENIHKDHETLMFSATM 350
           +  + ++ L        +GF ++V+ +LE + ++ +++MFSATM
Sbjct: 259 LSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFSATM 302


>gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
           mays]
          Length = 745

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
 Frame = +3

Query: 51  LVKLTNKQFDETASDVGTLCEYGGVTISRHMSALGRGVDVLLGHLVRLFI*SKEVH*TCQ 230
           L K   K+  E+A  +GT+C YGGV+ +   +AL RGVDV++G   R+         + Q
Sbjct: 176 LAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRII--DLINGGSLQ 233

Query: 231 IFSLFYMKLIRC----PIGFSKNVKTMLENIHKDHETLMFSATM 350
           +  + Y+ L        +GF ++V+T+L+ +  D ++++FSATM
Sbjct: 234 LGEVQYLVLDEADQMLAVGFEEDVETILQQLPADRQSMLFSATM 277


>ref|XP_002520585.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223540245|gb|EEF41818.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 323

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2   KGRNPLALVLAATRELAREVDKQAI**DC**CRYTL*IWRCDHFTPYECARSW-C*CVVG 178
           +GRNPLALV+A TRELAR+V+K+    +      T+ ++     +       +    VVG
Sbjct: 168 RGRNPLALVMAPTRELARQVEKEFH--ESAPSLDTICLYGGTPISRQMKELDYGVDVVVG 225

Query: 179 TPGQVIHLIKRSALNLSDIQF-VLYEADPM 265
           TPG++I L+KR +LNLS+IQF VL EAD M
Sbjct: 226 TPGRIIDLMKRGSLNLSEIQFVVLDEADQM 255


Top