BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00033170
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...   103   2e-20
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]     102   3e-20
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...   102   4e-20
gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group...   100   2e-19
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza...    99   5e-19

>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score =  103 bits (256), Expect = 2e-20
 Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 11/134 (8%)
 Frame = +2

Query: 5   FGFSVKDFRL--VLASCGVTTKASSIPSQA---STSRFSVLTPSLWHARLGHPRAPIL-- 163
           FGFSVK  R   V+  C       ++P  A   +   F   + +LWH RLGHP +  +  
Sbjct: 446 FGFSVKGLRTRRVILRCNSRGDLYTLPIAAPAIAAHSFLAQSSTLWHRRLGHPSSAAIQT 505

Query: 164 ---VPVLGSLQ-KHNFCQSCMLGKYIKFPFTKSSNSTTMPFDIIHSDLWTSPIISSSSHR 331
              + +L   +  H+ C +C LGK+ + PF++S +ST+ PF+++H D+WTSP++S+S  +
Sbjct: 506 LHKLAILPCTKIDHSLCHACKLGKHTRLPFSRSQSSTSSPFELVHCDVWTSPVLSTSGFK 565

Query: 332 YYLIFKDDYSNFLW 373
           YYL+  DD+S+F W
Sbjct: 566 YYLVVLDDFSHFCW 579


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score =  102 bits (255), Expect = 3e-20
 Identities = 54/136 (39%), Positives = 82/136 (60%), Gaps = 13/136 (9%)
 Frame = +2

Query: 5   FGFSVKDF--RLVLASCG----VTTKASSIPSQASTSRFSVLTPSLWHARLGHPRAPILV 166
           FGFSVKD   R V+  C     + T  +++P+  + S F   + +LWH RLGHP +P  V
Sbjct: 445 FGFSVKDLPTRRVILRCNSRGDLYTLPTTVPAITAHS-FLAKSSTLWHHRLGHP-SPAAV 502

Query: 167 PVLGSL-------QKHNFCQSCMLGKYIKFPFTKSSNSTTMPFDIIHSDLWTSPIISSSS 325
             L  L         +  C +C LGK+ +  F+KSS+ST+ PF+++H D+WTSP++S S 
Sbjct: 503 QTLHKLAILSCTRSNNKLCHACHLGKHTRLSFSKSSSSTSSPFELVHCDVWTSPVLSLSG 562

Query: 326 HRYYLIFKDDYSNFLW 373
            +YYL+  DD+++F W
Sbjct: 563 FKYYLVVLDDFTHFCW 578


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score =  102 bits (253), Expect = 4e-20
 Identities = 56/138 (40%), Positives = 75/138 (54%), Gaps = 14/138 (10%)
 Frame = +2

Query: 2   PFGFSVKDF--RLVLASCG-----VTTKASSIPSQASTSRFSVLTPSLWHARLGHPRAPI 160
           PFGFSVKD   R  L  C       +   SS PS       +     +WH RLGHP + +
Sbjct: 449 PFGFSVKDLKTRNKLLRCDSSGPLYSVTPSSYPSSHHALAATTSDSFIWHRRLGHPSSTL 508

Query: 161 LVPVLGSLQKH-------NFCQSCMLGKYIKFPFTKSSNSTTMPFDIIHSDLWTSPIISS 319
           L  +L SL          + CQ+C LGK+ + PF  S+   +  F+I+HSD+WTSP+ S 
Sbjct: 509 LSHLLSSLSISVPKTDLTSLCQACQLGKHTRLPFFNSNTIASSLFEIVHSDIWTSPVPSI 568

Query: 320 SSHRYYLIFKDDYSNFLW 373
           S  +YYLIF D YS+F+W
Sbjct: 569 SGLKYYLIFLDQYSHFVW 586


>gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709048|gb|ABF96843.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 594

 Score =  100 bits (248), Expect = 2e-19
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 12/135 (8%)
 Frame = +2

Query: 5   FGFSVKD--FRLVLASCGVTTKASSIPSQAST--SRFSVLTPS-LWHARLGHPRAPILVP 169
           FGFS+KD   R V+  C    +  ++P+ A +  + +++ T S LWH RLGHP  P  V 
Sbjct: 438 FGFSIKDPQTRRVILRCNSHGELYTLPAAAPSIAAHYNLATSSTLWHRRLGHP-GPTAVT 496

Query: 170 VLGSLQ-------KHNFCQSCMLGKYIKFPFTKSSNSTTMPFDIIHSDLWTSPIISSSSH 328
            L  L         ++ C +C LGK+ + PF KS++ST+ PF+++H D+WTS ++S S  
Sbjct: 497 TLQHLSAIPRSKTNNSLCHACQLGKHTRLPFNKSTSSTSSPFELVHCDVWTSLVMSISGF 556

Query: 329 RYYLIFKDDYSNFLW 373
           ++YL+  DD+++F W
Sbjct: 557 KFYLVLVDDFTHFCW 571


>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
          Length = 1803

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
 Frame = +2

Query: 2   PFGFSVKDFRLVLASCGVTTKAS----SIPSQASTSRFSVLTPSLWHARLGHPRAPILVP 169
           P GFS+KD +  +      +        +PS  + S  S  +   WH RLGHP +  L  
Sbjct: 455 PTGFSIKDLQTQVVKLRCDSPGDLYPLRLPSPHALSATSSPSVEHWHLRLGHPGSASLSK 514

Query: 170 VLGSLQKH------NFCQSCMLGKYIKFPFTKSSNSTTMPFDIIHSDLWTSPIISSSSHR 331
           VLGS          + C +C +G  ++ PF  SS+ T  PF ++H+D+WTSPI S+S ++
Sbjct: 515 VLGSFDFQCNKSAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYK 574

Query: 332 YYLIFKDDYSNFLW 373
           YY++F DD+++++W
Sbjct: 575 YYVVFLDDFTHYIW 588