BLASTX nr result
ID: Lithospermum22_contig00032605
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00032605
(1773 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ... 281 4e-80
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 286 4e-79
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 274 1e-78
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 276 4e-77
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 277 6e-77
>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1747
Score = 281 bits (720), Expect(2) = 4e-80
Identities = 173/426 (40%), Positives = 240/426 (56%), Gaps = 10/426 (2%)
Frame = -1
Query: 1647 PYLFIMCTEGLISLINGAIATERIRGVQVGRQGPMVSHLLDHLLFADDSLLFGQATMEEC 1468
PYLF++ EGL +LI A ++I GV + R P VSHL +ADDSLLF AT+ +C
Sbjct: 929 PYLFLIVAEGLSALIRKAEREQQIHGVAIARGAPSVSHLF----YADDSLLFCDATVTDC 984
Query: 1467 MVVKGLLKQYEEASGQCVNFDKSALFFSPNVAADLRVQLCQVLGVPEVEGHQKYLGLPSM 1288
M +K + YE ASGQ +N DKSA+ FSP A ++ +L +P V H++YLGLP++
Sbjct: 985 MALKNIFSTYEAASGQKINKDKSAICFSPKSPAAIKEACSAILDMPVVPCHERYLGLPTV 1044
Query: 1287 IGRNTAEIFYSVKERVRNRIEGWSSKTLPKAGKEVLVKAVL*AIPNYAMQCFRLPAYIIS 1108
G++ ++F S+ +RV NR+ GW K L KAGKEVL+K V AIPNY M F+LPA
Sbjct: 1045 SGKDKKKLFQSLPDRVWNRVHGWEGKLLSKAGKEVLIKTVAQAIPNYTMSVFQLPAGTSD 1104
Query: 1107 DLESMIANYWWGSTKEKRKP-HWSSWATLCKAKAERGLGFRRLEHFNSALLMKQAWRLVS 931
+ +A +WWG KE K HW W+ LC +K + GLGFR L FN ALL KQ WRL+
Sbjct: 1105 AINKCVARFWWG--KEGGKGIHWRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMM 1162
Query: 930 EPGSVLAEAYKAKYFPDTKFWDASLGSSPSYTWTSILSCNAIGVSGSLVMGIR*GFGKIH 751
P S++A KAKYFP F +A LGSSPSY W S L + L G+R G
Sbjct: 1163 YPDSLVARMLKAKYFPWDDFMEAELGSSPSYLWRSFLWGREL-----LRKGVRWRIG--D 1215
Query: 750 GS*MTVLRGL*VHLHPGF-----EQAQVAL-LMDLQNNR--WDEDIIRHVLLPCEAELVL 595
G + V V P F + A + L + DL +N W+ + + + E E +
Sbjct: 1216 GKEVRVFIDPWVPGLPSFRPILRQGAPLFLRVSDLLHNNGGWNMEALNYWFTDDECEAIS 1275
Query: 594 NMPFPQVGEPDVCVWSASPDGKFSVRSAYELIRKWSKENKEHS-STSRAPSKCWGNLRKW 418
++ PDV +W+ +G+++V+S Y L +EN+E + + AP W +L K
Sbjct: 1276 SITVGATRRPDVYMWNYCKNGRYTVKSGYWLA---CEENREEAINIVLAPRNFWKHLWKL 1332
Query: 417 KVPQKI 400
K+P KI
Sbjct: 1333 KLPPKI 1338
Score = 45.1 bits (105), Expect(2) = 4e-80
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = -2
Query: 1772 PDQVVRLIMDLITWVTYTLIVNGEQCG*ITPKRGLHQGDP 1653
PD+ V LIMD + VTY++++ G G I P RGL QGDP
Sbjct: 887 PDRFVFLIMDCVKSVTYSVLLQGAPFGKIKPSRGLRQGDP 926
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 286 bits (732), Expect(2) = 4e-79
Identities = 172/464 (37%), Positives = 252/464 (54%), Gaps = 33/464 (7%)
Frame = -1
Query: 1647 PYLFIMCTEGLISLINGAIATERIRGVQVGRQGPMVSHLLDHLLFADDSLLFGQATMEEC 1468
P+LF++C EGL +L+ A + I GV++G + +SHL FADDSLLF +AT EE
Sbjct: 650 PFLFVVCAEGLSTLLRDAEEKKVIHGVKIGHRVSPISHLF----FADDSLLFIRATEEEV 705
Query: 1467 MVVKGLLKQYEEASGQCVNFDKSALFFSPNVAADLRVQLCQVLGVPEVEGHQKYLGLPSM 1288
V +L YE ASGQ +N +KS + +S N+ D L L VEGH+KYLGLP+
Sbjct: 706 ENVMDILSTYEAASGQKLNMEKSEMSYSRNLEPDKINTLQMKLAFKTVEGHEKYLGLPTF 765
Query: 1287 IGRNTAEIFYSVKERVRNRIEGWSSKTLPKAGKEVLVKAVL*AIPNYAMQCFRLPAYIIS 1108
IG + +F ++++RV +++GW K L +AG+EVL+KAV AIP YAMQCF +P II
Sbjct: 766 IGSSKKRVFQAIQDRVWKKLKGWKGKYLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIID 825
Query: 1107 DLESMIANYWWGSTKEKRKPHWSSWATLCKAKAERGLGFRRLEHFNSALLMKQAWRLVSE 928
+E M N++WG +E+R+ W +W L K E GLG R + FN ALL KQAWR++++
Sbjct: 826 GIEKMCRNFFWGQKEEERRVAWVAWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTK 885
Query: 927 PGSVLAEAYKAKYFPDTKFWDASLGSSPSYTWTSILSCNAIGVSGSL-VMGIR*GFGKIH 751
P S++A K KYFP + F +A + + S+T SILS A+ G V+G
Sbjct: 886 PDSLMARVIKGKYFPRSNFLEARVSPNMSFTCKSILSARAVIQKGMCRVIG--------D 937
Query: 750 GS*MTVLRGL*VHLHPGFEQAQVALLMD-------------LQNNRWDEDIIRHVLLPCE 610
G T+ V P E+ +A + N+RW+ +++ + P E
Sbjct: 938 GRDTTIWGDPWV---PSLERYSIAATEGVSEDDGPQKVCELISNDRWNVELLNTLFQPWE 994
Query: 609 AELVLNMPFPQVGEPDVCVWSASPDGKFSVRSAYELIRKWSKENKEHSSTSRAPS-KCWG 433
+ + +P +PD +W S +G+F+VRSAY + ++ K STSR P+ K W
Sbjct: 995 STAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAY--YHELLEDRKTGPSTSRGPNLKLWQ 1052
Query: 432 NLRKWKVPQKI------------------RRRGMVVDSYCKLCG 355
+ K K+P K+ R+RGM +D C CG
Sbjct: 1053 KIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCG 1096
Score = 37.4 bits (85), Expect(2) = 4e-79
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -2
Query: 1772 PDQVVRLIMDLITWVTYTLIVNGEQCG*ITPKRGLHQGDP 1653
P + +L+M+ +T ++++VNG+ P RGL QGDP
Sbjct: 608 PTRYTKLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQGDP 647
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 274 bits (700), Expect(2) = 1e-78
Identities = 146/392 (37%), Positives = 225/392 (57%), Gaps = 2/392 (0%)
Frame = -1
Query: 1647 PYLFIMCTEGLISLINGAIATERIRGVQVGRQGPMVSHLLDHLLFADDSLLFGQATMEEC 1468
PYLFIM + +I + +++ G + R GP +SHL FADDSLLF +A +EC
Sbjct: 645 PYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLF----FADDSLLFTRANRQEC 700
Query: 1467 MVVKGLLKQYEEASGQCVNFDKSALFFSPNVAADLRVQLCQVLGVPEVEGHQKYLGLPSM 1288
++ +L QYE ASGQ +N++KS + +S V+ + +L +L + +V+ H+KYLG+PS+
Sbjct: 701 TIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSI 760
Query: 1287 IGRNTAEIFYSVKERVRNRIEGWSSKTLPKAGKEVLVKAVL*AIPNYAMQCFRLPAYIIS 1108
GR+ IF S+ +R+ +++GW K L +AGKEVL+K+V+ AIP Y M ++ P +II
Sbjct: 761 SGRSKKAIFDSLIDRIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQ 820
Query: 1107 DLESMIANYWWGSTKEKRKPHWSSWATLCKAKAERGLGFRRLEHFNSALLMKQAWRLVSE 928
++S +A +WWGS+ +RK HW +W ++C K G+GF+ L FN ALL +QAWRL E
Sbjct: 821 KIQSAMARFWWGSSDTQRKIHWKNWDSMCNLKCFGGMGFKDLTIFNDALLGRQAWRLTRE 880
Query: 927 PGSVLAEAYKAKYFPDTKFWDASLGSSPSYTWTSILSCNAIGVSGSLVMGIR*GFGKIHG 748
P S+L KAKYFP+ F +A LG S SY+W+SI S A+ G ++ + G
Sbjct: 881 PQSLLGRVMKAKYFPNCDFLNAPLGHSSSYSWSSIWSSKALLKEG-VIWRVGNGSQINMW 939
Query: 747 S*MTVL--RGL*VHLHPGFEQAQVALLMDLQNNRWDEDIIRHVLLPCEAELVLNMPFPQV 574
S VL G + P V+ L+D W ++ L + +L P
Sbjct: 940 SDPWVLDEGGRFLTSTPHASIRWVSELIDFDRMEWKTSLLESFLNERDLRCILASPLSAT 999
Query: 573 GEPDVCVWSASPDGKFSVRSAYELIRKWSKEN 478
PD W+ + D +SV++AY + + + +N
Sbjct: 1000 PVPDELTWAFTKDATYSVKTAYMIGKGGNLDN 1031
Score = 48.1 bits (113), Expect(2) = 1e-78
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -2
Query: 1760 VRLIMDLITWVTYTLIVNGEQCG*ITPKRGLHQGDP 1653
V LIM+ ++ VTY+ I+NG CG + P RGL QGDP
Sbjct: 607 VNLIMEFVSSVTYSFIINGSVCGSVVPARGLRQGDP 642
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 276 bits (707), Expect(2) = 4e-77
Identities = 168/487 (34%), Positives = 257/487 (52%), Gaps = 39/487 (8%)
Frame = -1
Query: 1647 PYLFIMCTEGLISLINGAIATERIRGVQVGRQGPMVSHLLDHLLFADDSLLFGQATMEEC 1468
PYL+++CTEGL +LI +I +++ G + R GP +SHLL FA DSL+F +AT+EEC
Sbjct: 96 PYLYLLCTEGLSALIQASIKAKQLHGFKASRNGPAISHLL----FAHDSLVFCKATLEEC 151
Query: 1467 MVVKGLLKQYEEASGQCVNFDKSALFFSPNVAADLRVQLCQVLGVPEVEGHQKYLGLPSM 1288
M + +LK YE+ASGQ VNF KSA+ F + QL Q+LG+ + EG +YLGLP
Sbjct: 152 MTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEF 211
Query: 1287 IGRNTAEIFYSVKERVRNRIEGWSSKTLPKAGKEVLVKAVL*AIPNYAMQCFRLPAYIIS 1108
+GRN F + + + +++ W +K L AGKEVL+K+++ AIP Y+M CF LP +I
Sbjct: 212 VGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIH 271
Query: 1107 DLESMIANYWWGSTKEKRKPHWSSWATLCKAKAERGLGFRRLEHFNSALLMKQAWRLVSE 928
+ S + +WW +TK K K W +W+ L K GL R L+ FN ALL KQ+WR++ +
Sbjct: 272 QITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQ 331
Query: 927 PGSVLAEAYKAKYFPDTKFWDASLGSSPSYTWTSILSCNAIGVSGSLVMGIR*GFGKIHG 748
P S++A +KAKYFP + DA S SY W SIL + + G++ G +G
Sbjct: 332 PFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILHGTKL-----ISRGLKYIAG--NG 384
Query: 747 S*MTVLRGL*VHLHPG----------FEQAQVALLMDLQNNRWDEDIIRHVLLPCEAELV 598
+ + + + + L+P + Q +V+ L L RW+ED++ ++ + +
Sbjct: 385 NNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDL--LIEGRWNEDLLCKLIHQNDIPHI 442
Query: 597 LNMPFPQVGEPDVCVWSASPDGKFSVRSAYELIRKWSKENKEH--SSTSRAPSKCWGNLR 424
+ G D W + DG +SV+S Y L+RK S++ S + + N+
Sbjct: 443 RAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIW 502
Query: 423 KWKVPQKI------------------RRRGMVVDSYCKLCG---------LFQSCSFTME 325
K P KI +RR ++ D C+ CG LFQ C + E
Sbjct: 503 KQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQ-CRVSKE 561
Query: 324 VYRLLQI 304
++ I
Sbjct: 562 IWEQAHI 568
Score = 40.0 bits (92), Expect(2) = 4e-77
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = -2
Query: 1751 IMDLITWVTYTLIVNGEQCG*ITPKRGLHQGDP 1653
IM IT TY++++NG+ I PKRG+ QGDP
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDP 93
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 277 bits (708), Expect(3) = 6e-77
Identities = 168/486 (34%), Positives = 254/486 (52%), Gaps = 37/486 (7%)
Frame = -1
Query: 1647 PYLFIMCTEGLISLINGAIATERIRGVQVGRQGPMVSHLLDHLLFADDSLLFGQATMEEC 1468
PYLFI+CTE LI+ I A I G++V P VSHLL FADDSL F +A E+C
Sbjct: 425 PYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLL----FADDSLFFCKANKEQC 480
Query: 1467 MVVKGLLKQYEEASGQCVNFDKSALFFSPNVAADLRVQLCQVLGVPEVEGHQKYLGLPSM 1288
++ +LKQYE SGQ +NF KS++ F V ++ + +LG+ + G YLGLP
Sbjct: 481 GIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPES 540
Query: 1287 IGRNTAEIFYSVKERVRNRIEGWSSKTLPKAGKEVLVKAVL*AIPNYAMQCFRLPAYIIS 1108
+G + ++F V++R+++RI GWS+K L K GKEV++K+V +P Y M CFRLP I S
Sbjct: 541 LGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITS 600
Query: 1107 DLESMIANYWWGSTKEKRKPHWSSWATLCKAKAERGLGFRRLEHFNSALLMKQAWRLVSE 928
L S +A +WW S + R HW +W LC +K++ GLGFR ++ FNSALL KQ WRL++
Sbjct: 601 KLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITA 660
Query: 927 PGSVLAEAYKAKYFPDTKFWDASLGSSPSYTWTSILSCNAIGVSGSLVMGIR*GFGKIHG 748
P S+ A+ +K +YF + D+ SPSY W S++S ++ G + K G
Sbjct: 661 PDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLI---------KRVG 711
Query: 747 S*MTVLRGL*VHLHPGFEQ------------AQVALLMDLQNNRWDEDIIRHVLLPCEAE 604
S ++ + F + +V L+D ++N W+ D+++ + P +
Sbjct: 712 SGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVP 771
Query: 603 LVLNMPFPQVGEPDVCVWSASPDGKFSVRSAYELIRKWSKENK----EHSSTSRA---PS 445
L+ +P D W + G ++V+S Y R E +T +A
Sbjct: 772 LISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKV 831
Query: 444 KCWGNLRK--WK-------VPQKIRRRGMVVDSYCKLCG---------LFQSCSFTMEVY 319
+C LR W+ V + +R+RG++ D C CG LFQ C +++
Sbjct: 832 QCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQ-CHPARQIW 890
Query: 318 RLLQIP 301
L QIP
Sbjct: 891 ALSQIP 896
Score = 38.5 bits (88), Expect(3) = 6e-77
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -2
Query: 1751 IMDLITWVTYTLIVNGEQCG*ITPKRGLHQGDP 1653
IM IT V Y +++NG+ G I P+RGL QGDP
Sbjct: 390 IMWCITTVQYKVLINGQPKGLIIPERGLRQGDP 422
Score = 21.9 bits (45), Expect(3) = 6e-77
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 251 WMICLWNIWFQRNKALRGEQIRQPNEVVEFAI 156
W+I W IW RN+ + + P E++ A+
Sbjct: 929 WII--WYIWKARNEKVFENVDKDPMEILLLAV 958