BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00032532
         (1318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containi...   542   e-152
ref|XP_002525134.1| pentatricopeptide repeat-containing protein,...   490   e-136
ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|2...   470   e-130
ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containi...   456   e-126
ref|XP_002876469.1| pentatricopeptide repeat-containing protein ...   447   e-123

>ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like
            [Vitis vinifera]
          Length = 921

 Score =  542 bits (1397), Expect = e-152
 Identities = 265/434 (61%), Positives = 335/434 (77%)
 Frame = +3

Query: 12   IEIFLRMRLCSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLVN 191
            +E+FL+M L   VLPN++TFVSVI+SCT +Q +++GEYIH+K+I+  ++SNV+VGS+LV+
Sbjct: 340  LELFLKMSLDG-VLPNETTFVSVINSCTNLQILVFGEYIHAKVIRNKIESNVFVGSALVD 398

Query: 192  FYVKIHRLATAECCFNEILEKNMVSWNTLMQGYSQDEQSVSLSLLKEAMQLGHYPTEFSF 371
            FY K   L +A CCF+EI EKN+V WN L+ GYS    S S+SLLK  +QLG+ P EFSF
Sbjct: 399  FYAKCDNLESAHCCFDEIDEKNVVCWNALILGYSNKCFS-SVSLLKRMLQLGYCPNEFSF 457

Query: 372  SAVLNSCLPLELQQLHSLIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSV 551
            SA L S L  ELQQLH LI+  GY +NEY+ SAL+ SY +NG++SDAL F  + +    V
Sbjct: 458  SAALKSSLVFELQQLHCLIMRMGYQQNEYVSSALITSYAKNGIISDALIFDAASNKPLLV 517

Query: 552  VISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKL 731
              SN +AG+YN+ G++H+TQ LFSLLEEPDIVSWNILI AC+RNGDY+E FEL  HMQ  
Sbjct: 518  GPSNAIAGVYNKIGQYHRTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMA 577

Query: 732  NVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRS 911
             ++PDNYT VSL SVC +LCNLALGSS+HG  IK +F  CDTFV NV+IDMYGKCGC+ S
Sbjct: 578  QIYPDNYTVVSLLSVCTKLCNLALGSSIHGFIIKTDFKFCDTFVFNVLIDMYGKCGCIES 637

Query: 912  SLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRH 1091
            SLKIF ++   N+I+WTA+IS+LG++G+A+EAL+ F EM + GFKPD VA  A+ SACRH
Sbjct: 638  SLKIFNKIIERNIITWTALISALGVNGYANEALKLFREMESLGFKPDGVALVAVFSACRH 697

Query: 1092 VGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIWR 1271
             GLVKEGM LF  MK + GIEP +DHY+ VVDL A+CG++ +AEQ IS MPFPPN +IWR
Sbjct: 698  GGLVKEGMELFWQMKKSCGIEPNIDHYHCVVDLLARCGHLQEAEQVISNMPFPPNALIWR 757

Query: 1272 SFLRGFKRKGVAEN 1313
            SFL G KR   AEN
Sbjct: 758  SFLEGCKRWKTAEN 771



 Score =  129 bits (325), Expect = 1e-27
 Identities = 98/411 (23%), Positives = 201/411 (48%), Gaps = 4/411 (0%)
 Frame = +3

Query: 78   VISSCTRMQNVLYGEYIHSKIIKTGLQSN--VYVGSSLVNFYVKIHRLATAECCFNEILE 251
            ++ +C +   +   + +H+  +     S   +++ ++L++ YV    L+TA   F E+ +
Sbjct: 57   LLQACKKAPTLKETKPLHALTVTMASNSTQPIFLYNNLISLYVLQGELSTARKVFGEMTQ 116

Query: 252  KNMVSWNTLMQGYSQDEQ-SVSLSLLKEAMQLGHYPTEFSFSAVLNSCLPLELQQLHSLI 428
            +N+VS+NT++ GYS++     + +L  E  + G  PT+ +F+ +L SC  L+L Q     
Sbjct: 117  RNVVSYNTIIGGYSRNGSVEEAWNLFSEMRRYGFEPTQHTFAGLL-SCASLKLSQ----- 170

Query: 429  VGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSVVISNVLAGIYNRSGEFHKT 608
             GF           L A   ++GL         +D  + + ++S     ++ R+G   + 
Sbjct: 171  -GF----------QLQAQMVKSGLFH-------ADPYAGTALLS-----LFGRNGCIDEV 207

Query: 609  QQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKLNVHPDNYTYVSLYSVCAQL 788
               F  + + ++V+WN +I+     G  EE+  L   + +        +++ + S  A  
Sbjct: 208  VCAFEEMPQKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGAGLSECSFMGVLSGFASE 267

Query: 789  CNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRSSLKIFYEMANMNVISWTAV 968
             +L LG  +H L IK  F+ C+  V N +I+MY KC C+  + K+F      +V+SW  +
Sbjct: 268  QDLELGEQVHDLLIKNGFD-CEVSVLNSLINMYVKCSCICLAEKMFELGCVRDVVSWNTM 326

Query: 969  ISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRHVGLVKEGMRLF-KLMKSTY 1145
            I +L       + LE F +M  +G  P++  F +++++C ++ ++  G  +  K++++  
Sbjct: 327  IGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQILVFGEYIHAKVIRNK- 385

Query: 1146 GIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIWRSFLRGFKRK 1298
             IE  +   + +VD +AKC  ++ A     ++    N + W + + G+  K
Sbjct: 386  -IESNVFVGSALVDFYAKCDNLESAHCCFDEID-EKNVVCWNALILGYSNK 434



 Score =  107 bits (267), Expect = 7e-21
 Identities = 98/450 (21%), Positives = 187/450 (41%), Gaps = 33/450 (7%)
 Frame = +3

Query: 57   NDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLVNFYVKIHRLATAECCF 236
            ++ +F+ V+S     Q++  GE +H  +IK G    V V +SL+N YVK   +  AE  F
Sbjct: 253  SECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDCEVSVLNSLINMYVKCSCICLAEKMF 312

Query: 237  NEILEKNMVSWNTLMQGYSQDEQ-SVSLSLLKEAMQLGHYPTEFSFSAVLNSCLPLELQQ 413
                 +++VSWNT++   ++ E+ S  L L  +    G  P E +F +V+NSC  L++  
Sbjct: 313  ELGCVRDVVSWNTMIGALAKSERPSKVLELFLKMSLDGVLPNETTFVSVINSCTNLQI-- 370

Query: 414  LHSLIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSVVISNVLAGIYNRSG 593
               L+ G      EYI + ++    RN + S             +V + + L   Y +  
Sbjct: 371  ---LVFG------EYIHAKVI----RNKIES-------------NVFVGSALVDFYAKCD 404

Query: 594  EFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKLNVHPDNYTYVSLYS 773
                    F  ++E ++V WN LI   S       +  LL  M +L   P+ ++    +S
Sbjct: 405  NLESAHCCFDEIDEKNVVCWNALILGYSNK--CFSSVSLLKRMLQLGYCPNEFS----FS 458

Query: 774  VCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRSSL------------ 917
               +   +     LH L ++  + + + +V + +I  Y K G +  +L            
Sbjct: 459  AALKSSLVFELQQLHCLIMRMGYQQ-NEYVSSALITSYAKNGIISDALIFDAASNKPLLV 517

Query: 918  --------------------KIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNE 1037
                                 +F  +   +++SW  +I++   +G   E  E F  M   
Sbjct: 518  GPSNAIAGVYNKIGQYHRTQDLFSLLEEPDIVSWNILIAACARNGDYKEVFELFKHMQMA 577

Query: 1038 GFKPDKVAFTAILSACRHVGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDK 1217
               PD     ++LS C  +  +  G  +   +  T     +   +N+++D++ KCG ++ 
Sbjct: 578  QIYPDNYTVVSLLSVCTKLCNLALGSSIHGFIIKTDFKFCDTFVFNVLIDMYGKCGCIES 637

Query: 1218 AEQFISQMPFPPNEMIWRSFLRGFKRKGVA 1307
            + +  +++    N + W + +      G A
Sbjct: 638  SLKIFNKI-IERNIITWTALISALGVNGYA 666


>ref|XP_002525134.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535593|gb|EEF37261.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 792

 Score =  490 bits (1262), Expect = e-136
 Identities = 239/428 (55%), Positives = 318/428 (74%)
 Frame = +3

Query: 12   IEIFLRMRLCSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLVN 191
            +E+F +M   + + PN  TF S+ISSC  +Q  +Y E+IH+K+I     ++VYVGS+LV+
Sbjct: 301  LELFFKMPRDA-IRPNQITFASLISSCANLQIPMYAEFIHAKVIMHAFDTDVYVGSALVD 359

Query: 192  FYVKIHRLATAECCFNEILEKNMVSWNTLMQGYSQDEQSVSLSLLKEAMQLGHYPTEFSF 371
            +Y K  +L  A CCF +I EKN+VSWN+L+ G +      ++SLL E +Q G+ P EFSF
Sbjct: 360  YYAKCDKLDDARCCFVKIHEKNVVSWNSLILGCANKCPYAAISLLVEMLQCGYQPNEFSF 419

Query: 372  SAVLNSCLPLELQQLHSLIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSV 551
            SAVL S   LELQQLH LI+  GY  N+Y+ S+L+ SY RNGL+SDAL F  + +   + 
Sbjct: 420  SAVLISSSILELQQLHCLIIRMGYDNNDYVLSSLITSYGRNGLISDALVFLAASETPLAA 479

Query: 552  VISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKL 731
            V SN +AGIYN++G ++KT +L S LEEPD VSWNI I AC+RNG+Y+E FEL   M   
Sbjct: 480  VPSNNVAGIYNKAGHYYKTLELLSQLEEPDNVSWNIAIAACARNGNYKEVFELFKQMLVA 539

Query: 732  NVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRS 911
             +HPDNYTYVSL S  +Q+C+LALGSS+HG  IK  F+ CDTFVCNV++DMYGKCGCLRS
Sbjct: 540  QIHPDNYTYVSLLSSSSQICDLALGSSIHGFLIKNNFSSCDTFVCNVLLDMYGKCGCLRS 599

Query: 912  SLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRH 1091
            S+KIF  M + N+I+WTA+IS+LG++  AHEALE+F +M ++G +PDKVAF A+L+ACRH
Sbjct: 600  SVKIFNSMRDRNLITWTALISALGINSCAHEALERFKDMEHQGLRPDKVAFIAVLTACRH 659

Query: 1092 VGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIWR 1271
              LV EG+ LFK MKS YG+EPEMDHY+ +VDLF++ G+V +AE+ IS MP PPN +IWR
Sbjct: 660  GALVGEGIELFKKMKS-YGLEPEMDHYHCLVDLFSRHGHVKEAEKVISSMPCPPNALIWR 718

Query: 1272 SFLRGFKR 1295
            +FL G K+
Sbjct: 719  TFLEGCKK 726



 Score =  112 bits (280), Expect = 2e-22
 Identities = 93/366 (25%), Positives = 170/366 (46%), Gaps = 7/366 (1%)
 Frame = +3

Query: 57   NDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLVNFYVKIHRLATAECCF 236
            ++ +FV V+S     + + +GE IHS + KTG    V V +S+++ YVK   L  AE  F
Sbjct: 214  SECSFVGVLSGLVCGKYLEFGEQIHSLVTKTGFDYTVSVVNSVISVYVKCATLHLAEKKF 273

Query: 237  NEILEKNMVSWNTLMQGYSQDEQSV-SLSLLKEAMQLGHYPTEFSFSAVLNSC----LPL 401
             E   K++V+WNT++   ++ E+ + +L L  +  +    P + +F+++++SC    +P+
Sbjct: 274  EEAACKDIVTWNTMIVALAKSEKPIKALELFFKMPRDAIRPNQITFASLISSCANLQIPM 333

Query: 402  ELQQLHSLIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSVVISNVLAGIY 581
              + +H+ ++   +  + Y+ SALV  Y +   L DA                       
Sbjct: 334  YAEFIHAKVIMHAFDTDVYVGSALVDYYAKCDKLDDA----------------------- 370

Query: 582  NRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKLNVHPDNYTYV 761
                     +  F  + E ++VSWN LI  C+    Y  A  LL  M +    P+ +++ 
Sbjct: 371  ---------RCCFVKIHEKNVVSWNSLILGCANKCPY-AAISLLVEMLQCGYQPNEFSF- 419

Query: 762  SLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRSSLKIFYEMAN 941
            S   + + +  L     LH L I+  ++  D +V + +I  YG+ G +  +L +F   + 
Sbjct: 420  SAVLISSSILEL---QQLHCLIIRMGYDNND-YVLSSLITSYGRNGLISDAL-VFLAASE 474

Query: 942  --MNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRHVGLVKEGM 1115
              +  +    V       GH ++ LE  S++     +PD V++   ++AC   G  KE  
Sbjct: 475  TPLAAVPSNNVAGIYNKAGHYYKTLELLSQLE----EPDNVSWNIAIAACARNGNYKEVF 530

Query: 1116 RLFKLM 1133
             LFK M
Sbjct: 531  ELFKQM 536



 Score =  108 bits (270), Expect = 3e-21
 Identities = 99/369 (26%), Positives = 176/369 (47%), Gaps = 11/369 (2%)
 Frame = +3

Query: 3    ETTIEIFLRMRLCSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGL-QSNVYVGS 179
            E  + +F RMR C +  PN+ T +S + SC++M ++  G  + +  +K GL   + +VG+
Sbjct: 96   EEALGVFSRMRDCGF-RPNNFT-LSGLLSCSKM-DLSIGLQLQALAMKNGLFYIDAFVGT 152

Query: 180  SLVNFYVKIHRLATAECCFNEILEKNMVSWNTLM-----QGYSQDEQSVSLSLLKEAMQL 344
            +L+N + +   L  A   F ++  K++V+WN+++      GY +D       L +E   +
Sbjct: 153  ALLNVFGRWGWLNEALHVFEDLPIKSLVTWNSIICLFGQHGYVEDCIIYFCELHRE---I 209

Query: 345  GHYPTEFSFSAVLNSCL---PLEL-QQLHSLIVGFGYCENEYIKSALVASYERNGLLSDA 512
            G   +E SF  VL+  +    LE  +Q+HSL+   G+                       
Sbjct: 210  GCCLSECSFVGVLSGLVCGKYLEFGEQIHSLVTKTGF----------------------- 246

Query: 513  LKFATSDDMSRSVVISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDY 692
                   D + SVV  N +  +Y +    H  ++ F      DIV+WN +I A +++   
Sbjct: 247  -------DYTVSVV--NSVISVYVKCATLHLAEKKFEEAACKDIVTWNTMIVALAKSEKP 297

Query: 693  EEAFELLNHMQKLNVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNV 872
             +A EL   M +  + P+  T+ SL S CA L        +H   I + F+  D +V + 
Sbjct: 298  IKALELFFKMPRDAIRPNQITFASLISSCANLQIPMYAEFIHAKVIMHAFD-TDVYVGSA 356

Query: 873  MIDMYGKCGCLRSSLKIFYEMANMNVISWTAVISSLGLHGHA-HEALEKFSEMVNEGFKP 1049
            ++D Y KC  L  +   F ++   NV+SW ++I  LG      + A+    EM+  G++P
Sbjct: 357  LVDYYAKCDKLDDARCCFVKIHEKNVVSWNSLI--LGCANKCPYAAISLLVEMLQCGYQP 414

Query: 1050 DKVAFTAIL 1076
            ++ +F+A+L
Sbjct: 415  NEFSFSAVL 423



 Score = 93.2 bits (230), Expect = 1e-16
 Identities = 58/240 (24%), Positives = 120/240 (50%), Gaps = 1/240 (0%)
 Frame = +3

Query: 510  ALKFATSDDMSRSVVISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGD 689
            AL      + ++   + N +  +Y    E    +++F  + +  I S+N +IT+  + G 
Sbjct: 35   ALTITLGPNPNQPAYLFNNIISLYTSFSELSLARKVFDNMPQRSIASYNSIITSYCKYGY 94

Query: 690  YEEAFELLNHMQKLNVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCN 869
             EEA  + + M+     P+N+T   L S C+++ +L++G  L  LA+K      D FV  
Sbjct: 95   LEEALGVFSRMRDCGFRPNNFTLSGLLS-CSKM-DLSIGLQLQALAMKNGLFYIDAFVGT 152

Query: 870  VMIDMYGKCGCLRSSLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNE-GFK 1046
             +++++G+ G L  +L +F ++   ++++W ++I   G HG+  + +  F E+  E G  
Sbjct: 153  ALLNVFGRWGWLNEALHVFEDLPIKSLVTWNSIICLFGQHGYVEDCIIYFCELHREIGCC 212

Query: 1047 PDKVAFTAILSACRHVGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQ 1226
              + +F  +LS       ++ G ++  L+  T G +  +   N V+ ++ KC  +  AE+
Sbjct: 213  LSECSFVGVLSGLVCGKYLEFGEQIHSLVTKT-GFDYTVSVVNSVISVYVKCATLHLAEK 271


>ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1|
            predicted protein [Populus trichocarpa]
          Length = 737

 Score =  470 bits (1209), Expect = e-130
 Identities = 235/434 (54%), Positives = 319/434 (73%)
 Frame = +3

Query: 12   IEIFLRMRLCSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLVN 191
            +E+FL+M     ++PN +TFVSVI+SCT +   + GEY+H KI+KT L+++VY+GS+LV+
Sbjct: 300  LEVFLKMSEDG-IMPNQTTFVSVINSCTSLLVPMCGEYVHGKIVKTALETDVYLGSALVD 358

Query: 192  FYVKIHRLATAECCFNEILEKNMVSWNTLMQGYSQDEQSVSLSLLKEAMQLGHYPTEFSF 371
            +Y K  +L  A  CF EI +KN+VSWN+L+ GY+      S+SLL E ++LG  P EFSF
Sbjct: 359  YYAKCGKLDNAHYCFREIHQKNVVSWNSLILGYANKCSFASVSLLLEMLKLGFRPNEFSF 418

Query: 372  SAVLNSCLPLELQQLHSLIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSV 551
            SAVL S L LEL+Q+HSL +  GY  NEY+ ++L+ SY RNGL++DAL F  + +   +V
Sbjct: 419  SAVLKSSLVLELKQIHSLTIRLGYENNEYVLTSLITSYGRNGLITDALIFVKASETLLAV 478

Query: 552  VISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKL 731
            V +N +AGIYNRSG++ +T +  S LEEPD VSWNI+I AC+RNG+Y E FEL  HM+  
Sbjct: 479  VPANSIAGIYNRSGQYFETLKFLSQLEEPDTVSWNIVIAACARNGNYNEVFELFKHMRVA 538

Query: 732  NVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRS 911
             + PDNYTY SL  V +++CNLALGSS+HGL IK  F+  D  V NV+IDMYGKCG L S
Sbjct: 539  QMLPDNYTYTSLLCVSSKVCNLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLES 598

Query: 912  SLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRH 1091
            S KIF  M   N+I+WTA+IS+LG++G A EALE+F++M   G +PDKVAF A+L+ACRH
Sbjct: 599  SAKIFDSMTERNLITWTALISALGINGCAQEALERFNDMEFLGSRPDKVAFIAVLTACRH 658

Query: 1092 VGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIWR 1271
              LV+EGM+LF  M + Y IEP+MDHY+ +VDL A+ G++++AE+ IS MPFPP+  IWR
Sbjct: 659  GALVREGMQLFGKM-NNYHIEPDMDHYHCLVDLLARNGHLEEAEKVISCMPFPPDAQIWR 717

Query: 1272 SFLRGFKRKGVAEN 1313
            SFL G K++   E+
Sbjct: 718  SFLEGCKKRRNTED 731



 Score =  114 bits (285), Expect = 6e-23
 Identities = 93/450 (20%), Positives = 186/450 (41%), Gaps = 35/450 (7%)
 Frame = +3

Query: 66   TFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLVNFYVKIHRLATAECCFNEI 245
            +F  V+S     +++ +G  IH  +IK+GL   V V +SL+N Y +   ++  E  F E+
Sbjct: 216  SFEGVLSGLVCEEDLEFGGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMSQVEKLFEEV 275

Query: 246  LEKNMVSWNTLMQGYSQDEQ-SVSLSLLKEAMQLGHYPTEFSFSAVLNSCLPLELQQLHS 422
              +++V+WNT++  +S+ +    +L +  +  + G  P + +F +V+NSC  L +     
Sbjct: 276  DGRDVVTWNTIISAFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSCTSLLVPMCGE 335

Query: 423  LIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSVVISNVLAGIYNRSGEFH 602
                  Y   + +K+AL                         V + + L   Y + G+  
Sbjct: 336  ------YVHGKIVKTAL----------------------ETDVYLGSALVDYYAKCGKLD 367

Query: 603  KTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKLNVHPDNYTYVSLY--SV 776
                 F  + + ++VSWN LI   +    +  +  LL  M KL   P+ +++ ++   S+
Sbjct: 368  NAHYCFREIHQKNVVSWNSLILGYANKCSF-ASVSLLLEMLKLGFRPNEFSFSAVLKSSL 426

Query: 777  CAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLR---------------- 908
              +L        +H L I+  +   + +V   +I  YG+ G +                 
Sbjct: 427  VLEL------KQIHSLTIRLGYEN-NEYVLTSLITSYGRNGLITDALIFVKASETLLAVV 479

Query: 909  ----------------SSLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEG 1040
                             +LK   ++   + +SW  VI++   +G+ +E  E F  M    
Sbjct: 480  PANSIAGIYNRSGQYFETLKFLSQLEEPDTVSWNIVIAACARNGNYNEVFELFKHMRVAQ 539

Query: 1041 FKPDKVAFTAILSACRHVGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKA 1220
              PD   +T++L     V  +  G  +  L+  T     ++   N+++D++ KCG ++ +
Sbjct: 540  MLPDNYTYTSLLCVSSKVCNLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESS 599

Query: 1221 EQFISQMPFPPNEMIWRSFLRGFKRKGVAE 1310
             +    M    N + W + +      G A+
Sbjct: 600  AKIFDSMT-ERNLITWTALISALGINGCAQ 628



 Score = 88.6 bits (218), Expect = 3e-15
 Identities = 60/262 (22%), Positives = 126/262 (48%)
 Frame = +3

Query: 510  ALKFATSDDMSRSVVISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGD 689
            AL      +  +S  + N +   Y    +     ++F  +   + VS+N +I+  S+ G 
Sbjct: 35   ALTITIGPNPEQSTFVYNNIISFYASFNQVPMAHKVFDNMPHRNKVSYNSIISCFSKYGY 94

Query: 690  YEEAFELLNHMQKLNVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCN 869
             EEA+     M      P+N+T   L S CA + ++  G  L  LAIK      D FV  
Sbjct: 95   LEEAWRTFCEMIDCGFRPNNFTLSGLLS-CASM-DVGRGIMLQALAIKNGLFCSDVFVGT 152

Query: 870  VMIDMYGKCGCLRSSLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKP 1049
             ++ ++G+CG L  +  +F +M + ++++W ++IS LG HG   + +  F ++V +    
Sbjct: 153  ALLGLFGRCGWLDEAFHVFEDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSL 212

Query: 1050 DKVAFTAILSACRHVGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQF 1229
             K +F  +LS       ++ G ++  L+  + G++ E+   N +++++A+   + + E+ 
Sbjct: 213  SKCSFEGVLSGLVCEEDLEFGGQIHGLVIKS-GLDCEVLVSNSLINMYARRSSMSQVEKL 271

Query: 1230 ISQMPFPPNEMIWRSFLRGFKR 1295
              ++    + + W + +  F +
Sbjct: 272  FEEVD-GRDVVTWNTIISAFSK 292


>ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like
            [Glycine max]
          Length = 732

 Score =  456 bits (1172), Expect = e-126
 Identities = 222/432 (51%), Positives = 311/432 (71%)
 Frame = +3

Query: 12   IEIFLRMRLCSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLVN 191
            +++FL M     ++P+ +TFV+VI SCT ++N + GE +H+KII++G +S+V VG++LV+
Sbjct: 301  LDLFLNMARRG-LMPSQATFVAVIHSCTSLRNSVCGESVHAKIIRSGFESDVIVGTALVD 359

Query: 192  FYVKIHRLATAECCFNEILEKNMVSWNTLMQGYSQDEQSVSLSLLKEAMQLGHYPTEFSF 371
            FY K  +  +A  CF++I EKN+VSWN L+ GYS    S S+ LL++ +QLG+ P EFSF
Sbjct: 360  FYSKCDKFISAHKCFDQIEEKNVVSWNALITGYSNICSSTSILLLQKMLQLGYSPNEFSF 419

Query: 372  SAVLNSCLPLELQQLHSLIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSV 551
            SAVL S     L QLH LI+  GY  NEY+ S+LV +Y RNGL+++AL F    +    V
Sbjct: 420  SAVLKSSSMSNLHQLHGLIIRSGYESNEYVLSSLVMAYTRNGLINEALSFVEEFNNPLPV 479

Query: 552  VISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKL 731
            V SN++AGIYNR+  +H+T +L SLLE+PD VSWNI+I+AC+R+  Y+E F L  HM   
Sbjct: 480  VPSNIIAGIYNRTSLYHETIKLLSLLEKPDAVSWNIVISACARSNSYDEVFALFKHMHSA 539

Query: 732  NVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRS 911
             +HPD+YT++S+ SVC +LC L LGSSLHGL IK   +  DTF+ NV+IDMYGKCG + S
Sbjct: 540  CIHPDSYTFMSIISVCTKLCLLNLGSSLHGLIIKTNLSNYDTFLGNVLIDMYGKCGSIDS 599

Query: 912  SLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRH 1091
            S+K+F E+   N+I+WTA+I++LGL+G AHEA+ +F  +   G KPD +A  A+LS+CR+
Sbjct: 600  SVKVFEEIMYKNIITWTALITALGLNGFAHEAVMRFQNLELMGLKPDALALRAVLSSCRY 659

Query: 1092 VGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIWR 1271
             GLV EGM +F+ M + YG+ PE DHY+ VVDL AK G + +AE+ I+ MPFPPN  IWR
Sbjct: 660  GGLVNEGMEIFRQMGTRYGVPPEHDHYHCVVDLLAKNGQIKEAEKIIACMPFPPNANIWR 719

Query: 1272 SFLRGFKRKGVA 1307
            SFL G+ R+ +A
Sbjct: 720  SFLEGYSRQEIA 731



 Score =  105 bits (261), Expect = 3e-20
 Identities = 94/412 (22%), Positives = 189/412 (45%), Gaps = 6/412 (1%)
 Frame = +3

Query: 72   VSVISSCTRMQNVLYGEYIHSKIIKTGL--QSNVYVGSSLVNFYVKIHRLATAECCFNEI 245
            ++++ +C  ++++   + +H+  I  G   + ++++ +++++ Y+ +  +  A   F+ +
Sbjct: 15   LNLLEACCTLRSLDATKCLHALSITMGHIPKQSIFIHNNIISSYIALGEVLNARKLFDAL 74

Query: 246  LEKNMVSWNTLMQGYSQ-DEQSVSLSLLKEAMQLGHYPTEFSFSAVLNSCLPLELQQLHS 422
              + +VS+NTL+  Y +      + +LL      G  PT+++ + +L SC  L     HS
Sbjct: 75   PHRTVVSYNTLITAYCRRGNVDDAWNLLCHMRGSGFAPTQYTLTGLL-SCELLN----HS 129

Query: 423  LIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRSVVISNVLAGIYNRSGEFH 602
              V             L A   RNGLL DA  F           +   L G++ R G + 
Sbjct: 130  RGV------------QLQALSIRNGLL-DADAF-----------VGTALLGLFGRLGCWD 165

Query: 603  KTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKLNVHPDNYTYVSLYS-VC 779
            +    F  + +  +V+WN +++  +RNG  EE   L   +    +     + V++ S + 
Sbjct: 166  ELFLAFEDMPQKSLVTWNSMVSLLARNGFVEECKILFRDLVGTGISLSEGSVVAVLSGLV 225

Query: 780  AQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRSSLKIFYEMANMNVISW 959
                +L  G  +HGL +K  F  C+    N +I +Y +C  + +  ++F ++   NV+SW
Sbjct: 226  DSEEDLEYGEQIHGLMVKCGFG-CEITAANSLISVYVRCKAMFAVERLFEQVPVENVVSW 284

Query: 960  TAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRHV--GLVKEGMRLFKLM 1133
              VI +L        AL+ F  M   G  P +  F A++ +C  +   +  E +   K++
Sbjct: 285  NTVIDALVKSERPMMALDLFLNMARRGLMPSQATFVAVIHSCTSLRNSVCGESVHA-KII 343

Query: 1134 KSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIWRSFLRGF 1289
            +S  G E ++     +VD ++KC     A +   Q+    N + W + + G+
Sbjct: 344  RS--GFESDVIVGTALVDFYSKCDKFISAHKCFDQIE-EKNVVSWNALITGY 392


>ref|XP_002876469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297322307|gb|EFH52728.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 741

 Score =  447 bits (1150), Expect = e-123
 Identities = 213/429 (49%), Positives = 305/429 (71%)
 Frame = +3

Query: 9    TIEIFLRMRLCSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGLQSNVYVGSSLV 188
            T+++F+ M    +  PN  T++SV+ + +  Q + +G  IH  +IK G ++++++G++L+
Sbjct: 300  TLKLFVSMPEHGFS-PNQGTYISVLGASSLRQLLSFGRQIHGMLIKNGCKTDIFLGNALI 358

Query: 189  NFYVKIHRLATAECCFNEILEKNMVSWNTLMQGYSQDEQSVSLSLLKEAMQLGHYPTEFS 368
            +FY K   L  +  CF+ I +KN+V WN L+ GYS  +  + LSL  + +Q+G  PTE++
Sbjct: 359  DFYAKCGSLEDSHLCFDYIRDKNIVCWNALLSGYSNKDGPICLSLFLQMLQMGFRPTEYT 418

Query: 369  FSAVLNSCLPLELQQLHSLIVGFGYCENEYIKSALVASYERNGLLSDALKFATSDDMSRS 548
            FS  L SC   ELQQLHS+IV  GY +N+Y+ S+L+ SY +N L+SDAL          S
Sbjct: 419  FSTTLKSCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMSDALFLLDWASGPTS 478

Query: 549  VVISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQK 728
            VV  N++AGIY+R G++H++ +L S LE+PD VSWNI I ACSR+ ++ E  +L  HM +
Sbjct: 479  VVPLNIVAGIYSRRGQYHESVKLISTLEQPDTVSWNIAIAACSRSDNHGEVIDLFKHMLQ 538

Query: 729  LNVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLR 908
             N+ PDNYT+VS+ S+C++LC+L LGSS+HGL  K +F+  DTFVCNV+IDMYGKCG +R
Sbjct: 539  SNIRPDNYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCVDTFVCNVLIDMYGKCGSIR 598

Query: 909  SSLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACR 1088
            S +K+F E    N+I+WTA+ISSLG++G+ HEALEKF E ++ GFKPD+V+F +IL+ACR
Sbjct: 599  SVIKVFEETREKNLITWTALISSLGIYGYGHEALEKFKETLSLGFKPDRVSFISILTACR 658

Query: 1089 HVGLVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIW 1268
            H G+VKEGM LF+ MK  YGIEPEMDHY   VDL A+ GY+ +AE  I +MPFP +  +W
Sbjct: 659  HGGMVKEGMDLFQKMKD-YGIEPEMDHYRCAVDLLARNGYLKEAEHLIHRMPFPADAPVW 717

Query: 1269 RSFLRGFKR 1295
            R+FL G  R
Sbjct: 718  RTFLDGCNR 726



 Score =  125 bits (313), Expect = 3e-26
 Identities = 105/365 (28%), Positives = 167/365 (45%), Gaps = 9/365 (2%)
 Frame = +3

Query: 18   IFLRMRLCSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIKTGL-QSNVYVGSSLVNF 194
            +   MR   Y LPN ST VS + SC  + ++  G  +H   +K GL  ++ YVG+ L+ F
Sbjct: 102  VLSEMRYFGY-LPNQST-VSGLLSCASL-DIRAGTQLHGLSLKYGLFMADAYVGTCLLCF 158

Query: 195  YVKIHRLATAECCFNEILEKNMVSWNTLM-----QGYSQDEQSVSLSLLKEAMQLGHYPT 359
            Y ++  L  AE  F ++  K++ +WN +M      G+ ++     + L +E + +G   T
Sbjct: 159  YGRLELLEMAEQVFEDMPFKSLETWNHMMSLLGHHGFLKE----CMFLFRELVGMGACLT 214

Query: 360  EFSFSAVLNSCLPLELQQLHSLIVGFGYCENEY-IKSALVASYERNGLLSDALKFATSDD 536
            E S   VL                    CEN+  I   L  S  + GL           D
Sbjct: 215  ESSLLGVLKGV----------------SCENDLEISKQLHCSATKQGL-----------D 247

Query: 537  MSRSVVISNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLN 716
               SVV  N L   Y + G  H  +++F      DIVSWN +I A +++ +  +  +L  
Sbjct: 248  CEISVV--NSLISAYGKCGNTHMAERMFQEAGSWDIVSWNAIIGATAKSENPLKTLKLFV 305

Query: 717  HMQKLNVHPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRC--DTFVCNVMIDMYG 890
             M +    P+  TY+S+    +    L+ G  +HG+ IK   N C  D F+ N +ID Y 
Sbjct: 306  SMPEHGFSPNQGTYISVLGASSLRQLLSFGRQIHGMLIK---NGCKTDIFLGNALIDFYA 362

Query: 891  KCGCLRSSLKIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTA 1070
            KCG L  S   F  + + N++ W A++S    +      L  F +M+  GF+P +  F+ 
Sbjct: 363  KCGSLEDSHLCFDYIRDKNIVCWNALLSGYS-NKDGPICLSLFLQMLQMGFRPTEYTFST 421

Query: 1071 ILSAC 1085
             L +C
Sbjct: 422  TLKSC 426



 Score =  116 bits (291), Expect = 1e-23
 Identities = 91/427 (21%), Positives = 192/427 (44%), Gaps = 7/427 (1%)
 Frame = +3

Query: 39   CSYVLPNDSTFVSVISSCTRMQNVLYGEYIHSKIIK--TGLQSNVYVGSSLVNFYVKIHR 212
            C  +   +   VS+++ C +  +    + +H+  I   + +   VY+ ++++  Y K+  
Sbjct: 5    CGDLANQNGRLVSLLNVCRKAPSFARTKALHALSITLCSVILQPVYISNNIICLYEKLGE 64

Query: 213  LATAECCFNEILEKNMVSWNTLMQGYSQ-DEQSVSLSLLKEAMQLGHYPTEFSFSAVLNS 389
            ++ A   F+++ E+N VS+NT++ GYS+  +   +  +L E    G+ P + + S +L S
Sbjct: 65   VSLAGKVFDQMPERNKVSFNTIINGYSKYGDAEKAWGVLSEMRYFGYLPNQSTVSGLL-S 123

Query: 390  CLPLELQ---QLHSLIVGFG-YCENEYIKSALVASYERNGLLSDALKFATSDDMSRSVVI 557
            C  L+++   QLH L + +G +  + Y+ + L+  Y R  LL  A               
Sbjct: 124  CASLDIRAGTQLHGLSLKYGLFMADAYVGTCLLCFYGRLELLEMA--------------- 168

Query: 558  SNVLAGIYNRSGEFHKTQQLFSLLEEPDIVSWNILITACSRNGDYEEAFELLNHMQKLNV 737
                             +Q+F  +    + +WN +++    +G  +E   L   +  +  
Sbjct: 169  -----------------EQVFEDMPFKSLETWNHMMSLLGHHGFLKECMFLFRELVGMGA 211

Query: 738  HPDNYTYVSLYSVCAQLCNLALGSSLHGLAIKYEFNRCDTFVCNVMIDMYGKCGCLRSSL 917
                 + + +    +   +L +   LH  A K   + C+  V N +I  YGKCG    + 
Sbjct: 212  CLTESSLLGVLKGVSCENDLEISKQLHCSATKQGLD-CEISVVNSLISAYGKCGNTHMAE 270

Query: 918  KIFYEMANMNVISWTAVISSLGLHGHAHEALEKFSEMVNEGFKPDKVAFTAILSACRHVG 1097
            ++F E  + +++SW A+I +     +  + L+ F  M   GF P++  + ++L A     
Sbjct: 271  RMFQEAGSWDIVSWNAIIGATAKSENPLKTLKLFVSMPEHGFSPNQGTYISVLGASSLRQ 330

Query: 1098 LVKEGMRLFKLMKSTYGIEPEMDHYNIVVDLFAKCGYVDKAEQFISQMPFPPNEMIWRSF 1277
            L+  G ++  ++    G + ++   N ++D +AKCG ++ +      +    N + W + 
Sbjct: 331  LLSFGRQIHGMLIKN-GCKTDIFLGNALIDFYAKCGSLEDSHLCFDYIR-DKNIVCWNAL 388

Query: 1278 LRGFKRK 1298
            L G+  K
Sbjct: 389  LSGYSNK 395