BLASTX nr result

ID: Lithospermum22_contig00031551 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00031551
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001468345.1| ribosomal protein L16 [Ipomoea purpurea] gi|...    91   1e-17
gb|AGE93493.1| ribosomal protein L16 [Xiphidium caeruleum]             86   1e-16
ref|NP_904136.1| ribosomal protein L16 [Amborella trichopoda] gi...    86   2e-16
gb|AEX94521.1| ribosomal protein L16 (chloroplast) [Amaryllis be...    85   4e-16
ref|YP_003359395.1| ribosomal protein L16 (chloroplast) [Olea eu...    85   4e-16

>ref|YP_001468345.1| ribosomal protein L16 [Ipomoea purpurea]
           gi|215275569|sp|A7Y3I8.1|RK16_IPOPU RecName: Full=50S
           ribosomal protein L16, chloroplastic
           gi|157056795|gb|ABV02385.1| ribosomal protein L16
           [Ipomoea purpurea]
          Length = 147

 Score = 90.5 bits (223), Expect(2) = 1e-17
 Identities = 41/43 (95%), Positives = 42/43 (97%)
 Frame = -1

Query: 130 QHRGRMNGISSGGNHVCFGKYALQALEPAWITSRQIEAGRRAM 2
           QHRGRM GISSGGNH+CFGKYALQALEPAWITSRQIEAGRRAM
Sbjct: 12  QHRGRMKGISSGGNHICFGKYALQALEPAWITSRQIEAGRRAM 54



 Score = 24.3 bits (51), Expect(2) = 1e-17
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 242 RTKFPEQHRGRM 207
           RT+F +QHRGRM
Sbjct: 6   RTRFRKQHRGRM 17


>gb|AGE93493.1| ribosomal protein L16 [Xiphidium caeruleum]
          Length = 135

 Score = 85.5 bits (210), Expect(2) = 1e-16
 Identities = 38/43 (88%), Positives = 41/43 (95%)
 Frame = -1

Query: 130 QHRGRMNGISSGGNHVCFGKYALQALEPAWITSRQIEAGRRAM 2
           QHRGRMNGIS  GNH+CFG+YALQALEPAWIT+RQIEAGRRAM
Sbjct: 12  QHRGRMNGISCRGNHICFGRYALQALEPAWITARQIEAGRRAM 54



 Score = 25.4 bits (54), Expect(2) = 1e-16
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 242 RTKFPEQHRGRM 207
           RTKF +QHRGRM
Sbjct: 6   RTKFRKQHRGRM 17


>ref|NP_904136.1| ribosomal protein L16 [Amborella trichopoda]
           gi|75275906|sp|Q70XX3.1|RK16_AMBTC RecName: Full=50S
           ribosomal protein L16, chloroplastic
           gi|34481666|emb|CAD45144.1| ribosomal protein L16
           [Amborella trichopoda]
          Length = 135

 Score = 85.9 bits (211), Expect(2) = 2e-16
 Identities = 38/43 (88%), Positives = 41/43 (95%)
 Frame = -1

Query: 130 QHRGRMNGISSGGNHVCFGKYALQALEPAWITSRQIEAGRRAM 2
           QHRGRM G+SS GNH+CFG+YALQALEPAWITSRQIEAGRRAM
Sbjct: 12  QHRGRMKGVSSRGNHICFGRYALQALEPAWITSRQIEAGRRAM 54



 Score = 24.3 bits (51), Expect(2) = 2e-16
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 242 RTKFPEQHRGRM 207
           RT+F +QHRGRM
Sbjct: 6   RTRFRKQHRGRM 17


>gb|AEX94521.1| ribosomal protein L16 (chloroplast) [Amaryllis belladonna]
          Length = 139

 Score = 85.1 bits (209), Expect(2) = 4e-16
 Identities = 38/43 (88%), Positives = 41/43 (95%)
 Frame = -1

Query: 130 QHRGRMNGISSGGNHVCFGKYALQALEPAWITSRQIEAGRRAM 2
           QHRGRM GISS GNH+CFG+YALQALEPAWIT+RQIEAGRRAM
Sbjct: 16  QHRGRMKGISSRGNHICFGRYALQALEPAWITARQIEAGRRAM 58



 Score = 24.3 bits (51), Expect(2) = 4e-16
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 242 RTKFPEQHRGRM 207
           RT+F +QHRGRM
Sbjct: 10  RTRFRKQHRGRM 21


>ref|YP_003359395.1| ribosomal protein L16 (chloroplast) [Olea europaea]
           gi|281428723|gb|ADA69962.1| ribosomal protein L16
           (chloroplast) [Olea europaea]
          Length = 136

 Score = 85.1 bits (209), Expect(2) = 4e-16
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = -1

Query: 130 QHRGRMNGISSGGNHVCFGKYALQALEPAWITSRQIEAGRRAM 2
           QHRGRM GIS  GNH+CFGKYALQALEPAWITSRQIEAGRRAM
Sbjct: 13  QHRGRMKGISYRGNHICFGKYALQALEPAWITSRQIEAGRRAM 55



 Score = 24.3 bits (51), Expect(2) = 4e-16
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 242 RTKFPEQHRGRM 207
           RT+F +QHRGRM
Sbjct: 7   RTRFRKQHRGRM 18


Top