BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00031388
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABI34306.1| Polyprotein, putative [Solanum demissum]                75   6e-12
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]                75   6e-12
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...    71   8e-11
gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subc...    70   2e-10
gb|AAX96359.1| retrotransposon protein, putative, Ty1-copia sub-...    70   2e-10

>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
          Length = 1691

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
 Frame = -2

Query: 269 LKKNLISPSLLC*SGLKITLESDKFVITKSGVFVGKVYSIGGMFKHTI--NEVNISVY*V 96
           ++K L+S  LL  +G K  +ES+++VI K G+FVGK Y+  GMFK  +  N+ + SVY +
Sbjct: 376 MRKKLMSSFLLNKAGFKQIIESNQYVIVKKGIFVGKGYACDGMFKLNVEMNKTSTSVYML 435

Query: 95  DSFNIWHARL*HINRKYFSFMS 30
            S N WHARL HIN +Y   MS
Sbjct: 436 SSTNFWHARLCHINDRYVGIMS 457


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
 Frame = -2

Query: 269 LKKNLISPSLLC*SGLKITLESDKFVITKSGVFVGKVYSIGGMF----KHTINEVNISVY 102
           ++ NL+S +LL   G+K++ ESDK VITK+ VFVGK Y   G+F       +NE   S Y
Sbjct: 389 IRVNLVSVALLSKVGVKVSFESDKIVITKNNVFVGKGYCDQGLFVLNISEIMNESTSSAY 448

Query: 101 *VDSFNIWHARL*HINRKY 45
            VDS++IWHARL H+N  Y
Sbjct: 449 IVDSYDIWHARLGHVNSSY 467


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1303

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
 Frame = -2

Query: 269 LKKNLISPSLLC*SGLKITLESDKFVITKSGVFVGKVYSIGGMFKHTINE-------VNI 111
           +KKNL+S SLLC  G ++  ES+K V++K G FVGK Y  GG+F+ ++N+       VN 
Sbjct: 475 IKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNAVN- 533

Query: 110 SVY*VDSFNIWHARL*HIN 54
            +  +D  N+WH+RL H+N
Sbjct: 534 HISEIDESNVWHSRLCHVN 552


>gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 503

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
 Frame = -2

Query: 269 LKKNLISPSLLC*SGLKITLESDKFVITKSGVFVGKVYSIGGMFKHTI------NEVNIS 108
           +KKNL+S SLLC  G K+  ES+K V++K G F+GK Y  GG+F+ ++      N V   
Sbjct: 379 IKKNLVSGSLLCREGFKLVFESNKCVVSKYGTFIGKGYDSGGLFRFSLDDMCNNNNVVNH 438

Query: 107 VY*VDSFNIWHARL*HINRKYFSFMSKYDYLKVN 6
           +   D  N+WH+RL H+N   F  M++   + +N
Sbjct: 439 INENDESNVWHSRLCHVN---FGCMTRLANMSLN 469


>gb|AAX96359.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549036|gb|ABA91833.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 709

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 6/78 (7%)
 Frame = -2

Query: 269 LKKNLISPSLLC*SGLKITLESDKFVITKSGVFVGKVYSIGGMFKHTINEV----NI--S 108
           +KKNL+S SLLC  G ++  ES+K VI+K G FVGK Y  GG+F+ ++N++    N+   
Sbjct: 316 IKKNLVSGSLLCREGFRLVFESNKCVISKYGTFVGKGYDSGGLFRFSLNDMCNNHNVVNH 375

Query: 107 VY*VDSFNIWHARL*HIN 54
           +   D  N+WH+RL H+N
Sbjct: 376 ISENDESNVWHSRLCHVN 393