BLASTX nr result
ID: Lithospermum22_contig00030204
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00030204
(951 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja... 47 2e-09
gb|ABB46931.2| retrotransposon protein, putative, unclassified [... 47 2e-09
gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo... 51 3e-09
ref|XP_003560464.1| PREDICTED: putative ribonuclease H protein A... 55 5e-08
gb|EEC72931.1| hypothetical protein OsI_06781 [Oryza sativa Indi... 42 2e-07
>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
Length = 1888
Score = 47.4 bits (111), Expect(2) = 2e-09
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Frame = -1
Query: 903 IVPIIILWVFWEARNKKKHTGRDYSFQLIRKR-IQNFILNLGRAELMQYKHW---KGNLY 736
++ +++LW W RN+ H G+ L+ KR I++++L+L AE+ Q+ KG
Sbjct: 1650 VMLLMVLWRIWHTRNEIVH-GKPAPGMLVSKRFIESYVLSL--AEIKQHPQASPEKGKHV 1706
Query: 735 VAVSLSIPILQKRKNKPQILLWTRPPLGQFKLNVDGAFKE 616
V V KR +P W +P G KLNVDG+F+E
Sbjct: 1707 VDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQE 1746
Score = 41.2 bits (95), Expect(2) = 2e-09
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Frame = -2
Query: 599 GLGGIMRDHNGNVLFARGIHT-VTSSPLHTELVVVHNMLTWCLKKGYKDLIIETDSNTLV 423
G+G ++R+ G V+FA H SS L TEL+ + L L+ ++IETD ++
Sbjct: 1752 GIGAVLRNCTGEVIFAACGHVDCCSSALETELLACRDGLALALQWTLLPIVIETDCLAMI 1811
Query: 422 KMI---TSQKSSWELYNLMRLTTSLLQATQS-RIIHIKREQNVAAD*IAKAARNNKLDYT 255
+ T KS EL L+R SLL + R QN + +A R +K+
Sbjct: 1812 HLFRDATGAKS--ELAFLIREIDSLLVGNRDISFSKCLRSQNHISHYLANKGRCDKITQF 1869
Query: 254 W 252
W
Sbjct: 1870 W 1870
>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1853
Score = 47.4 bits (111), Expect(2) = 2e-09
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Frame = -1
Query: 903 IVPIIILWVFWEARNKKKHTGRDYSFQLIRKR-IQNFILNLGRAELMQYKHW---KGNLY 736
++ +++LW W RN+ H G+ L+ KR I++++L+L AE+ Q+ KG
Sbjct: 1615 VMLLMVLWRIWHTRNEIVH-GKPAPGMLVSKRFIESYVLSL--AEIKQHPQASPEKGKHV 1671
Query: 735 VAVSLSIPILQKRKNKPQILLWTRPPLGQFKLNVDGAFKE 616
V V KR +P W +P G KLNVDG+F+E
Sbjct: 1672 VDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQE 1711
Score = 41.2 bits (95), Expect(2) = 2e-09
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Frame = -2
Query: 599 GLGGIMRDHNGNVLFARGIHT-VTSSPLHTELVVVHNMLTWCLKKGYKDLIIETDSNTLV 423
G+G ++R+ G V+FA H SS L TEL+ + L L+ ++IETD ++
Sbjct: 1717 GIGAVLRNCTGEVIFAACGHVDCCSSALETELLACRDGLALALQWTLLPIVIETDCLAMI 1776
Query: 422 KMI---TSQKSSWELYNLMRLTTSLLQATQS-RIIHIKREQNVAAD*IAKAARNNKLDYT 255
+ T KS EL L+R SLL + R QN + +A R +K+
Sbjct: 1777 HLFRDATGAKS--ELAFLIREIDSLLVGNRDISFSKCLRSQNHISHYLANKGRCDKITQF 1834
Query: 254 W 252
W
Sbjct: 1835 W 1835
>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
Length = 1256
Score = 50.8 bits (120), Expect(2) = 3e-09
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Frame = -1
Query: 903 IVPIIILWVFWEARNKKKHTGRDYSFQLIRKR-IQNFILNLGRAELMQYKHW---KGNLY 736
++ +++LW W RN+ H G+ L+ KR I++++L+L AE+ Q+ KG
Sbjct: 1018 VMLLMVLWRIWHTRNEIVH-GKPAPGILVSKRFIESYVLSL--AEIKQHPQANPEKGKHV 1074
Query: 735 VAVSLSIPILQKRKNKPQILLWTRPPLGQFKLNVDGAFKEGHAGARAG 592
V V L KR +P W++P G KLNVDG+F+E G
Sbjct: 1075 VDVVLKKSHSIKRSREPAPDKWSKPLPGSMKLNVDGSFQESEGKGGIG 1122
Score = 37.4 bits (85), Expect(2) = 3e-09
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Frame = -2
Query: 599 GLGGIMRDHNGNVLFARGIHT-VTSSPLHTELVVVHNMLTWCLKKGYKDLIIETDSNTLV 423
G+G ++R+ G V+FA H SS L EL+ + L L+ ++IETD +V
Sbjct: 1120 GIGAVLRNCTGEVIFAACGHVDHCSSALEMELLASRDGLALALQWTLLPIVIETDCLAMV 1179
Query: 422 KMI---TSQKSSWELYNLMRLTTSLLQATQSRIIH-IKREQNVAAD*IAKAARNNKLDYT 255
+ T KS EL L+ SLL + + R QN+ + +A R +K+
Sbjct: 1180 HLFRDATGAKS--ELAFLITEIDSLLVGNRDISFNKCLRSQNLISHCLANKGRCDKITQF 1237
Query: 254 W 252
W
Sbjct: 1238 W 1238
>ref|XP_003560464.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
[Brachypodium distachyon]
Length = 194
Score = 54.7 bits (130), Expect(2) = 5e-08
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Frame = -2
Query: 596 LGGIMRDHNGNVL--FARGIHTVTSSPLHTELVVVHNMLTWCLKKGYKDLIIETDSNTLV 423
+GG++RDHNGN + +A I TSS EL + +L L+ G++D+ +E D T V
Sbjct: 52 IGGVVRDHNGNFVLGYAESIGKATSSV--AELAALRRVLELALENGWRDICVEGDFKTAV 109
Query: 422 KMITS---QKSSWELYNLMRLTTSLLQATQSRIIHIKREQNVAAD*IAK 285
ITS +++ +L + ++ L + ++ + H+ R N AD A+
Sbjct: 110 DDITSGARVRATKDLEQIKKIAEMLPRIGKASVSHVPRRGNSVADGFAE 158
Score = 29.3 bits (64), Expect(2) = 5e-08
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 720 SIPILQKRKNKPQILLWTRPPLGQFKLNVDGAFKEGHAG-ARAGRDH 583
S P LQ+R + +W +P G+ KLN DG+ K A RDH
Sbjct: 16 SAPNLQQRGSA---CIWMKPKAGRLKLNFDGSSKSTSASIGGVVRDH 59
>gb|EEC72931.1| hypothetical protein OsI_06781 [Oryza sativa Indica Group]
Length = 318
Score = 41.6 bits (96), Expect(2) = 2e-07
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Frame = -2
Query: 599 GLGGIMRDHNGNVLFA--RGIHTVTSSPLHTELVVVHNMLTWCLKKGYKDLIIETDSNTL 426
G+G ++RD +GN +FA + ++ T + L +EL L L +++ETD ++
Sbjct: 181 GIGMVLRDSSGNTIFASCKPLNRCTGA-LESELRACVEGLNLVLHWTLLPILVETDCMSV 239
Query: 425 VKMIT-SQKSSWELYNLMRLTTSLLQATQSRII-HIKREQNVAAD*IAKAARNNKLDYTW 252
V+++ ++ EL N++ LL T+ ++ I R QN + +A A+ + + W
Sbjct: 240 VQLLNDGERDRSELANIVHEAKRLLAGTRRILVSKIHRSQNSVSHLLANRAKVDSVSGVW 299
Query: 251 EPSTMRIHLKAV 216
+ L+ V
Sbjct: 300 LEGSCNFILRLV 311
Score = 40.4 bits (93), Expect(2) = 2e-07
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Frame = -1
Query: 906 HIVPIIILWVFWEARNKKKHTGRDYSFQLIRKRIQNFILNLGRAELMQYKHW-KGNLYVA 730
H + ++ LW W RN+ H ++ ++ ++++I L + + K KG +
Sbjct: 74 HEMFLMTLWRNWHVRNEITHDKASPPLEVSKRFVESYIATLFQIKESPLKDVEKGKSVAS 133
Query: 729 VSLSIPILQKRKNKPQI----LLWTRPPLGQFKLNVDGAF 622
+S++ + + + ++ L W +P +G KLNVDG+F
Sbjct: 134 LSVTGRVRDRASDDHRVPNPVLHWVKPQVGWMKLNVDGSF 173