BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00030159
         (1811 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269319.2| PREDICTED: pentatricopeptide repeat-containi...   543   e-152
ref|XP_003535694.1| PREDICTED: pentatricopeptide repeat-containi...   521   e-145
ref|XP_002518643.1| pentatricopeptide repeat-containing protein,...   354   4e-95
ref|NP_172286.1| pentatricopeptide repeat-containing protein [Ar...   340   6e-91
gb|AEP33760.1| organelle transcript processing 82, partial [Caps...   337   8e-90

>ref|XP_002269319.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Vitis vinifera]
          Length = 532

 Score =  543 bits (1399), Expect = e-152
 Identities = 261/453 (57%), Positives = 340/453 (75%)
 Frame = -3

Query: 1791 MPDKSVICCWTNLISGYAVSGQSEKALELFCSMVKDNLQPENDTMVSVLSACSSLEAAKV 1612
            MPD++++ CWT+LI+G A SGQ+E+ L LF  MVK+NL+PENDT+VSVLSACS LEA ++
Sbjct: 1    MPDRAMVRCWTSLIAGSAQSGQTEEVLRLFFMMVKENLRPENDTIVSVLSACSKLEAVEI 60

Query: 1611 ERWANVFDELGNDHDREKLVGDNVNVVLVYLYGKQGKFDESRERFDRISIQGKRSVLSWN 1432
            E+W  +  E  ND D      D+VN VL YLYGK GK ++ +ERFD I   GKRSVL WN
Sbjct: 61   EKWVMILSEFINDDDTGSFGRDSVNTVLAYLYGKWGKVEKCKERFDEIVGIGKRSVLPWN 120

Query: 1431 VMIGAYVQNGCYLEGLSLYRLMMEEYDCIPNHVTMVYVLSACAHVGDIDIGTRVHSYLRT 1252
            V+I AYVQNGC  E LSL+R+M+E+ +  PNHVTMV VLSACA VGD+D+G  +H Y+++
Sbjct: 121  VIISAYVQNGCSFEALSLFRVMIEDLNLRPNHVTMVSVLSACAQVGDLDLGKWIHGYVKS 180

Query: 1251 KEHRGVLFSNKNLATALIDMYYKCGNVEKARDVFGEIRTKDIVLFNAMIMGLAVNGKGEA 1072
            +  + ++ SN  LATALIDMY KCGN+ KA+DVF ++ +KD+V FNAMIMGLA+NG+GE 
Sbjct: 181  EGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQMVSKDVVSFNAMIMGLAINGEGEE 240

Query: 1071 AFSYFSEIQELGLHPDAATFLGLLCACSHSGLLEKGRQVFKDMISKFKISPKLEHYASYI 892
            A   FS++QEL L P++ TFLG+LCACSHSGLL+ GRQ+F DMI  F + P+LEHYA Y+
Sbjct: 241  ALRLFSKMQELSLRPNSGTFLGVLCACSHSGLLDTGRQMFLDMIPHFSVPPELEHYACYV 300

Query: 891  DLLARVGCIKEAMQVVSSMPFEPNQYVWGALLSGSLLHDQSDIAQIASSMLLKSDPGNSG 712
            DLLARVG ++EA +VV+SMPF PN +VWGALL G  LH + ++AQ  S  L+K DP NS 
Sbjct: 301  DLLARVGLLEEAFEVVASMPFVPNNFVWGALLQGCRLHSRLELAQDVSQKLVKVDPENSA 360

Query: 711  GYVMLSNSFASDNRWGDVSGVRGFMRDKGVTKHPGCSWIGIYNMVHEFVAGSTSHPNCEV 532
            GYVM SN+ ASD +WG+VSG+R  MR+KGV KHPGCSWI +  +VHEF+AGS SHP  + 
Sbjct: 361  GYVMFSNALASDQQWGEVSGLRWLMREKGVRKHPGCSWISVNRVVHEFLAGSLSHPQIDS 420

Query: 531  VHSRLEELIKEMKIPSL*ETTNLVCILYWMNNI 433
            ++  L  L+KEMK+ +    T L  +L+  N +
Sbjct: 421  IYHTLNGLVKEMKVFASYHNTQLDALLHTENKV 453


>ref|XP_003535694.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like
            [Glycine max]
          Length = 634

 Score =  521 bits (1341), Expect = e-145
 Identities = 263/452 (58%), Positives = 334/452 (73%), Gaps = 1/452 (0%)
 Frame = -3

Query: 1809 RKLFDEMPDKSVICCWTNLISGYAVSGQSEKALELFCSMVKDNLQPENDTMVSVLSACSS 1630
            RK+FDE+PDK ++ CWTNLI+G+A SG SE+ L+LF  MV+ NL P++DTMVSVLSACSS
Sbjct: 186  RKVFDEIPDKMLVSCWTNLITGFAQSGHSEEVLQLFQVMVRQNLLPQSDTMVSVLSACSS 245

Query: 1629 LEAAKVERWANVFDEL-GNDHDREKLVGDNVNVVLVYLYGKQGKFDESRERFDRISIQGK 1453
            LE  K+E+W NVF EL G+     +   D+VN VLVYL+GK G+ ++SRE FDRIS  GK
Sbjct: 246  LEMPKIEKWVNVFLELVGDGVSTRETCHDSVNTVLVYLFGKWGRIEKSRENFDRISTSGK 305

Query: 1452 RSVLSWNVMIGAYVQNGCYLEGLSLYRLMMEEYDCIPNHVTMVYVLSACAHVGDIDIGTR 1273
             SV+ WN MI AYVQNGC +EGL+L+R+M+EE    PNH+TMV VLSACA +GD+  G+ 
Sbjct: 306  SSVVPWNAMINAYVQNGCPVEGLNLFRMMVEEETTRPNHITMVSVLSACAQIGDLSFGSW 365

Query: 1272 VHSYLRTKEHRGVLFSNKNLATALIDMYYKCGNVEKARDVFGEIRTKDIVLFNAMIMGLA 1093
            VH YL +  HR  + SN+ LAT+LIDMY KCGN++KA+ VF    +KD+VLFNAMIMGLA
Sbjct: 366  VHGYLISLGHRHTIGSNQILATSLIDMYSKCGNLDKAKKVFEHTVSKDVVLFNAMIMGLA 425

Query: 1092 VNGKGEAAFSYFSEIQELGLHPDAATFLGLLCACSHSGLLEKGRQVFKDMISKFKISPKL 913
            V GKGE A   F +I E GL P+A TFLG L ACSHSGLL +GRQ+F+++     ++  L
Sbjct: 426  VYGKGEDALRLFYKIPEFGLQPNAGTFLGALSACSHSGLLVRGRQIFRELTLSTTLT--L 483

Query: 912  EHYASYIDLLARVGCIKEAMQVVSSMPFEPNQYVWGALLSGSLLHDQSDIAQIASSMLLK 733
            EH A YIDLLARVGCI+EA++VV+SMPF+PN +VWGALL G LLH + ++AQ  S  L++
Sbjct: 484  EHCACYIDLLARVGCIEEAIEVVTSMPFKPNNFVWGALLGGCLLHSRVELAQEVSRRLVE 543

Query: 732  SDPGNSGGYVMLSNSFASDNRWGDVSGVRGFMRDKGVTKHPGCSWIGIYNMVHEFVAGST 553
             DP NS GYVML+N+ ASDN+W DVSG+R  M++KGV K PG SWI +   VHEF+ G  
Sbjct: 544  VDPDNSAGYVMLANALASDNQWSDVSGLRLEMKEKGVKKQPGSSWIIVDGAVHEFLVGCL 603

Query: 552  SHPNCEVVHSRLEELIKEMKIPSL*ETTNLVC 457
            SHP  E ++  L  L+K MK+ S     NLVC
Sbjct: 604  SHPEIEGIYHTLAGLVKNMKVAS---HFNLVC 632


>ref|XP_002518643.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223542024|gb|EEF43568.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 318

 Score =  354 bits (909), Expect = 4e-95
 Identities = 173/283 (61%), Positives = 221/283 (78%)
 Frame = -3

Query: 1791 MPDKSVICCWTNLISGYAVSGQSEKALELFCSMVKDNLQPENDTMVSVLSACSSLEAAKV 1612
            MP+K ++CCWT+LISG+A SG SE+ L++FC MVK+NL+PENDTMVSV SACS+LE  ++
Sbjct: 1    MPEKGLLCCWTSLISGFAQSGYSEEVLKIFCLMVKENLEPENDTMVSVFSACSNLEICQI 60

Query: 1611 ERWANVFDELGNDHDREKLVGDNVNVVLVYLYGKQGKFDESRERFDRISIQGKRSVLSWN 1432
            E+W  V  EL  D + +    D VN VLVYLYGK GK ++SRERFD IS  GKRSVL WN
Sbjct: 61   EKWLTVLVELNIDGNLKSSTCDKVNNVLVYLYGKLGKIEKSRERFDDISDSGKRSVLPWN 120

Query: 1431 VMIGAYVQNGCYLEGLSLYRLMMEEYDCIPNHVTMVYVLSACAHVGDIDIGTRVHSYLRT 1252
             MI AYVQNG  LE L ++ LM+++ +  PNHVTMV VLSACA VG++++G  VH YL+ 
Sbjct: 121  SMINAYVQNGYALEALCIFHLMVKDPNSRPNHVTMVSVLSACAQVGNLELGRWVHEYLKF 180

Query: 1251 KEHRGVLFSNKNLATALIDMYYKCGNVEKARDVFGEIRTKDIVLFNAMIMGLAVNGKGEA 1072
            K  +GVL SN  LATALIDMY KCG+++KA++VF ++ +KD+V FNAMIMGLA+NG+G+ 
Sbjct: 181  KGRKGVLESNTFLATALIDMYSKCGSLDKAKEVFYQMVSKDVVSFNAMIMGLAINGEGQE 240

Query: 1071 AFSYFSEIQELGLHPDAATFLGLLCACSHSGLLEKGRQVFKDM 943
            A   FS++QELGLHP+  TFLGLL ACSHSGL ++GRQ+F DM
Sbjct: 241  AVKLFSKVQELGLHPNGGTFLGLLWACSHSGLSDEGRQIFLDM 283


>ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g08070 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15
            [Arabidopsis thaliana] gi|332190118|gb|AEE28239.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 741

 Score =  340 bits (873), Expect = 6e-91
 Identities = 180/436 (41%), Positives = 274/436 (62%), Gaps = 2/436 (0%)
 Frame = -3

Query: 1809 RKLFDEMPDKSVICCWTNLISGYAVSGQSEKALELFCSMVKDNLQPENDTMVSVLSACSS 1630
            +KLFDE+P K V+  W  +ISGYA +G  ++ALELF  M+K N++P+  TMV+V+SAC+ 
Sbjct: 220  QKLFDEIPVKDVVS-WNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 1629 LEAAKVERWANVFDELGNDHDREKLVGDNVNVV--LVYLYGKQGKFDESRERFDRISIQG 1456
              + ++ R  +++ +   DH      G N+ +V  L+ LY K G+ + +   F+R+    
Sbjct: 279  SGSIELGRQVHLWID---DHG----FGSNLKIVNALIDLYSKCGELETACGLFERLPY-- 329

Query: 1455 KRSVLSWNVMIGAYVQNGCYLEGLSLYRLMMEEYDCIPNHVTMVYVLSACAHVGDIDIGT 1276
             + V+SWN +IG Y     Y E L L++ M+   +  PN VTM+ +L ACAH+G IDIG 
Sbjct: 330  -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDIGR 387

Query: 1275 RVHSYLRTKEHRGVLFSNKNLATALIDMYYKCGNVEKARDVFGEIRTKDIVLFNAMIMGL 1096
             +H Y+  K  +GV  ++ +L T+LIDMY KCG++E A  VF  I  K +  +NAMI G 
Sbjct: 388  WIHVYI-DKRLKGVTNAS-SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445

Query: 1095 AVNGKGEAAFSYFSEIQELGLHPDAATFLGLLCACSHSGLLEKGRQVFKDMISKFKISPK 916
            A++G+ +A+F  FS ++++G+ PD  TF+GLL ACSHSG+L+ GR +F+ M   +K++PK
Sbjct: 446  AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPK 505

Query: 915  LEHYASYIDLLARVGCIKEAMQVVSSMPFEPNQYVWGALLSGSLLHDQSDIAQIASSMLL 736
            LEHY   IDLL   G  KEA ++++ M  EP+  +W +LL    +H   ++ +  +  L+
Sbjct: 506  LEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLI 565

Query: 735  KSDPGNSGGYVMLSNSFASDNRWGDVSGVRGFMRDKGVTKHPGCSWIGIYNMVHEFVAGS 556
            K +P N G YV+LSN +AS  RW +V+  R  + DKG+ K PGCS I I ++VHEF+ G 
Sbjct: 566  KIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 625

Query: 555  TSHPNCEVVHSRLEEL 508
              HP    ++  LEE+
Sbjct: 626  KFHPRNREIYGMLEEM 641



 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 27/247 (10%)
 Frame = -3

Query: 1449 SVLSWNVMIGAYVQNGCYLEGLSLYRLMMEEYDCIPNHVTMVYVLSACAHVGDIDIGTRV 1270
            ++L WN M   +  +   +  L LY  M+     +PN  T  +VL +CA       G ++
Sbjct: 98   NLLIWNTMFRGHALSSDPVSALKLYVCMIS-LGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156

Query: 1269 HSYLRTKEHRGVLFSNKNLA---------------------------TALIDMYYKCGNV 1171
            H ++        L+ + +L                            TALI  Y   G +
Sbjct: 157  HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216

Query: 1170 EKARDVFGEIRTKDIVLFNAMIMGLAVNGKGEAAFSYFSEIQELGLHPDAATFLGLLCAC 991
            E A+ +F EI  KD+V +NAMI G A  G  + A   F ++ +  + PD +T + ++ AC
Sbjct: 217  ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSAC 276

Query: 990  SHSGLLEKGRQVFKDMISKFKISPKLEHYASYIDLLARVGCIKEAMQVVSSMPFEPNQYV 811
            + SG +E GRQV    I        L+   + IDL ++ G ++ A  +   +P++ +   
Sbjct: 277  AQSGSIELGRQVHL-WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVIS 334

Query: 810  WGALLSG 790
            W  L+ G
Sbjct: 335  WNTLIGG 341


>gb|AEP33760.1| organelle transcript processing 82, partial [Capsella bursa-pastoris]
          Length = 706

 Score =  337 bits (863), Expect = 8e-90
 Identities = 182/436 (41%), Positives = 273/436 (62%), Gaps = 2/436 (0%)
 Frame = -3

Query: 1809 RKLFDEMPDKSVICCWTNLISGYAVSGQSEKALELFCSMVKDNLQPENDTMVSVLSACSS 1630
            +K+FDE+P K V+  W  LISGYA +G  ++ALELF  M+K N++P+  TMV+VLSAC+ 
Sbjct: 189  QKMFDEIPVKDVVS-WNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACA- 246

Query: 1629 LEAAKVERWANVFDELGNDHDREKLVGDNVNVV--LVYLYGKQGKFDESRERFDRISIQG 1456
             ++A +E    V   + +DH      G N+ +V  L+ LY K G+ + +   F+ +S   
Sbjct: 247  -QSASIELGRQVHSWI-DDHG----FGSNLKIVNALIDLYIKCGEVETASGLFEGLSY-- 298

Query: 1455 KRSVLSWNVMIGAYVQNGCYLEGLSLYRLMMEEYDCIPNHVTMVYVLSACAHVGDIDIGT 1276
             + V+SWN +IG Y     Y E L L++ M+   +  PN VTM+ +L ACAH+G IDIG 
Sbjct: 299  -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNEVTMLSILPACAHLGAIDIGR 356

Query: 1275 RVHSYLRTKEHRGVLFSNKNLATALIDMYYKCGNVEKARDVFGEIRTKDIVLFNAMIMGL 1096
             +H Y+  K  +GV  +  +L T+LIDMY KCG++E A+ VF  +  + +  +NAMI G 
Sbjct: 357  WIHVYI-DKRLKGVS-NPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414

Query: 1095 AVNGKGEAAFSYFSEIQELGLHPDAATFLGLLCACSHSGLLEKGRQVFKDMISKFKISPK 916
            A++G+   AF  FS +++ G+ PD  TF+GLL ACSHSG+L+ GR +F+ M   +KI+PK
Sbjct: 415  AMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPK 474

Query: 915  LEHYASYIDLLARVGCIKEAMQVVSSMPFEPNQYVWGALLSGSLLHDQSDIAQIASSMLL 736
            LEHY   IDLL   G  KEA ++++SM  +P+  +W +LL    +H   ++ +  +  L+
Sbjct: 475  LEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLI 534

Query: 735  KSDPGNSGGYVMLSNSFASDNRWGDVSGVRGFMRDKGVTKHPGCSWIGIYNMVHEFVAGS 556
            K +P NSG YV+LSN +A+  RW +V+  R  + DKG+ K PGCS I I ++VHEF+ G 
Sbjct: 535  KIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD 594

Query: 555  TSHPNCEVVHSRLEEL 508
              HP    ++  LEE+
Sbjct: 595  KLHPRNREIYGMLEEM 610



 Score =  149 bits (376), Expect = 2e-33
 Identities = 113/378 (29%), Positives = 185/378 (48%), Gaps = 30/378 (7%)
 Frame = -3

Query: 1803 LFDEMPDKSVICCWTNLISGYAVSGQSEKALELFCSMVKDNLQPENDTMVSVLSACSSLE 1624
            +FD + + +++  W  +  G+A+S     AL L+  M+   L P + T   +L AC+  +
Sbjct: 59   VFDSIQEPNLLI-WNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSK 117

Query: 1623 AAKV-ERWANVFDELGNDHDREKLVGDNVNVVLVYLYGKQGKFDESRERFDRIS------ 1465
            A +  ++      +LG D D        V+  L+ +Y K G+ +++R+ FD+ S      
Sbjct: 118  AFREGQQIHGHVLKLGCDLDL------YVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVS 171

Query: 1464 ----IQGKRS------------------VLSWNVMIGAYVQNGCYLEGLSLYRLMMEEYD 1351
                I+G  S                  V+SWN +I  Y + G Y E L L++ MM+  +
Sbjct: 172  YTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKT-N 230

Query: 1350 CIPNHVTMVYVLSACAHVGDIDIGTRVHSYLRTKEHRGVLFSNKNLATALIDMYYKCGNV 1171
              P+  TMV VLSACA    I++G +VHS++   +H     SN  +  ALID+Y KCG V
Sbjct: 231  VKPDESTMVTVLSACAQSASIELGRQVHSWI--DDHG--FGSNLKIVNALIDLYIKCGEV 286

Query: 1170 EKARDVFGEIRTKDIVLFNAMIMGLAVNGKGEAAFSYFSEIQELGLHPDAATFLGLLCAC 991
            E A  +F  +  KD++ +N +I G       + A   F E+   G  P+  T L +L AC
Sbjct: 287  ETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPAC 346

Query: 990  SHSGLLEKGRQVFKDMISKFK-ISPKLEHYASYIDLLARVGCIKEAMQVVSSMPFEPNQY 814
            +H G ++ GR +   +  + K +S       S ID+ A+ G I+ A QV  SM    +  
Sbjct: 347  AHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLS 405

Query: 813  VWGALLSGSLLHDQSDIA 760
             W A++ G  +H +++ A
Sbjct: 406  SWNAMIFGFAMHGRANPA 423