BLASTX nr result
ID: Lithospermum22_contig00030115
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00030115
(726 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001752135.1| condensin complex component SMC4 [Physcomitr... 144 2e-42
emb|CCO16592.1| nuclear condensin complex subunit Smc4, putative... 140 8e-40
ref|XP_001632709.1| predicted protein [Nematostella vectensis] g... 139 1e-39
ref|XP_003625142.1| Structural maintenance of chromosomes protei... 134 2e-39
ref|NP_001032262.2| structural maintenance of chromosomes 4 [Rat... 132 1e-38
>ref|XP_001752135.1| condensin complex component SMC4 [Physcomitrella patens subsp.
patens] gi|162696530|gb|EDQ82868.1| condensin complex
component SMC4 [Physcomitrella patens subsp. patens]
Length = 1283
Score = 144 bits (363), Expect(2) = 2e-42
Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 15/106 (14%)
Frame = +3
Query: 234 VKKQYDDWRKRRLDEFM---------------IITLGGDAKFQLVDSLDPF*EGVVFSVR 368
+KK +DD RKRRLDEFM +ITLGGDA+ +LVDSLDPF EGVVF+VR
Sbjct: 1070 IKKSHDDLRKRRLDEFMGGFNSISMKLKEMYQMITLGGDAELELVDSLDPFAEGVVFTVR 1129
Query: 369 PPKKSWRNIANLSGGEKMLS*LALVFALHHNKPTPLYVMDEIDAAL 506
PPKKSW+ IANLSGGEK LS LALVFALHH KPTPLYVMDEIDAAL
Sbjct: 1130 PPKKSWKAIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 1175
Score = 54.7 bits (130), Expect(2) = 2e-42
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Frame = +2
Query: 53 IEESSKEKEQLIS-----EMVAILEAQLKEMSPNLDSISEHRKKVARYDERVGELNTVT 214
+E S KE IS E V +LE ++K M P+LDSI+E+R+K A YDER+ ELN V+
Sbjct: 1006 LEVSIKEPSSEISLARAKESVKVLEGEIKNMQPSLDSIAEYRRKAAMYDERIRELNQVS 1064
>emb|CCO16592.1| nuclear condensin complex subunit Smc4, putative [Bathycoccus
prasinos]
Length = 1194
Score = 140 bits (352), Expect(2) = 8e-40
Identities = 72/105 (68%), Positives = 83/105 (79%), Gaps = 15/105 (14%)
Frame = +3
Query: 237 KKQYDDWRKRRLDEFM---------------IITLGGDAKFQLVDSLDPF*EGVVFSVRP 371
++ +D+ RK+RL+EFM +ITLGGDA+ +LVDSLDPF EG+VFSVRP
Sbjct: 1008 RQTFDELRKKRLEEFMAGFSIISIKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRP 1067
Query: 372 PKKSWRNIANLSGGEKMLS*LALVFALHHNKPTPLYVMDEIDAAL 506
PKKSW+NIANLSGGEK LS LALVFALHH KPTPLYVMDEIDAAL
Sbjct: 1068 PKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 1112
Score = 50.1 bits (118), Expect(2) = 8e-40
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +2
Query: 56 EESSKEKEQLISEMVAILEAQLKEMSPNLDSISEHRKKVARYDERVGELNTVTLDRD 226
E+ S + E + +E +LKEM P++ SI + K+A Y+ERVG+L TVT +RD
Sbjct: 949 EQLSDINAESNDETINAIETELKEMKPDMTSIEQFAAKLAEYEERVGDLKTVTEERD 1005
>ref|XP_001632709.1| predicted protein [Nematostella vectensis]
gi|156219769|gb|EDO40646.1| predicted protein
[Nematostella vectensis]
Length = 1221
Score = 139 bits (350), Expect(2) = 1e-39
Identities = 72/105 (68%), Positives = 83/105 (79%), Gaps = 15/105 (14%)
Frame = +3
Query: 237 KKQYDDWRKRRLDEFM---------------IITLGGDAKFQLVDSLDPF*EGVVFSVRP 371
+K+++ RK+RLDEFM +ITLGGDA+ +LVDSLDPF EG+VFSVRP
Sbjct: 1056 RKEHEALRKKRLDEFMAGFSIITTKLKEMYQMITLGGDAELELVDSLDPFSEGIVFSVRP 1115
Query: 372 PKKSWRNIANLSGGEKMLS*LALVFALHHNKPTPLYVMDEIDAAL 506
PKKSW+NI+NLSGGEK LS LALVFALHH KPTPLYVMDEIDAAL
Sbjct: 1116 PKKSWKNISNLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAAL 1160
Score = 50.1 bits (118), Expect(2) = 1e-39
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +2
Query: 23 EKMIKKLTKAIEESSKEKEQLISEMVAILEAQLKEMSPNLDSISEHRKKVARYDERVGEL 202
E++ K T+ +E KE + + +LE +L ++ PN+ +I+E+RKK Y RVGEL
Sbjct: 989 EELPKLSTEDLEAVDKEA---VMYEITVLEEKLAQLKPNMAAIAEYRKKEEAYLARVGEL 1045
Query: 203 NTVTLDRDDVCEE 241
+ VT DRD+ +E
Sbjct: 1046 DQVTSDRDNKRKE 1058
>ref|XP_003625142.1| Structural maintenance of chromosomes protein [Medicago truncatula]
gi|355500157|gb|AES81360.1| Structural maintenance of
chromosomes protein [Medicago truncatula]
Length = 1017
Score = 134 bits (338), Expect(2) = 2e-39
Identities = 73/115 (63%), Positives = 84/115 (73%), Gaps = 24/115 (20%)
Frame = +3
Query: 234 VKKQYDDWRKRR------------------LDEF------MIITLGGDAKFQLVDSLDPF 341
+KKQYD+ RK+R ++++ +ITLGGDA+ +LVDSLDPF
Sbjct: 839 IKKQYDELRKKRPLITLTNTVPNGLHRVVIINKYYLFYCLQMITLGGDAELELVDSLDPF 898
Query: 342 *EGVVFSVRPPKKSWRNIANLSGGEKMLS*LALVFALHHNKPTPLYVMDEIDAAL 506
EGVVFSVRPPKKSW+NIANLSGGEK LS LALVFALHH KPTPLYVMDEIDAAL
Sbjct: 899 SEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 953
Score = 54.3 bits (129), Expect(2) = 2e-39
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 27/74 (36%)
Frame = +2
Query: 92 EMVAILEAQLKEMSPNLDSISE---------------------------HRKKVARYDER 190
E VA+LEAQLKEM+PNLDSI+E +RKKV+ + ER
Sbjct: 766 ETVALLEAQLKEMNPNLDSIAEYGLFQFVILTVFLFGVALKCFLIYDIRYRKKVSLHSER 825
Query: 191 VGELNTVTLDRDDV 232
V ELN VT +RDD+
Sbjct: 826 VEELNAVTRERDDI 839
>ref|NP_001032262.2| structural maintenance of chromosomes 4 [Rattus norvegicus]
Length = 1286
Score = 132 bits (332), Expect(2) = 1e-38
Identities = 68/105 (64%), Positives = 80/105 (76%), Gaps = 15/105 (14%)
Frame = +3
Query: 237 KKQYDDWRKRRLDEFM---------------IITLGGDAKFQLVDSLDPF*EGVVFSVRP 371
++ Y+D RK+RL+EFM ++TLGGDA+ +LVDSLDPF EG++FSVRP
Sbjct: 1119 RQAYEDLRKQRLNEFMAGFYVITNKLKENYQMLTLGGDAELELVDSLDPFSEGIMFSVRP 1178
Query: 372 PKKSWRNIANLSGGEKMLS*LALVFALHHNKPTPLYVMDEIDAAL 506
PKKSW+ I NLSGGEK LS LALVFALHH KPTPLY MDEIDAAL
Sbjct: 1179 PKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAAL 1223
Score = 53.9 bits (128), Expect(2) = 1e-38
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +2
Query: 86 ISEMVAILEAQLKEMSPNLDSISEHRKKVARYDERVGELNTVTLDRDD 229
I+ +A+LEAQ +EM PNL +I+E++KK Y +RVGEL+ +T +RD+
Sbjct: 1070 ITNQIALLEAQCREMKPNLGAIAEYKKKEELYLQRVGELDKITSERDN 1117