BLASTX nr result
ID: Lithospermum22_contig00030044
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00030044
(967 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 187 8e-93
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 192 4e-92
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 196 9e-92
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 190 1e-91
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 288 3e-91
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 187 bits (476), Expect(3) = 8e-93
Identities = 94/168 (55%), Positives = 119/168 (70%)
Frame = +2
Query: 368 VPYASAVGSLMYVMVYTRPNLAHAVSVVSRFMGEPGNEHWQAVKRIFRYLRGTSDMGLSY 547
VPY S VGSLMY MV +R +L+HA+SVVSR+M PG EHW+ V+ IF+YLRGTS L +
Sbjct: 993 VPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQF 1052
Query: 548 GGDSQCIISRYYDSDYARDVDSRRSMTGYVFTLGGSVVRWRATLQFTVTLSTTETEYMAL 727
G ++ Y DSD+A D+D RRS+TGYVFT+GG V W+A+LQ TV LSTTE EYMA+
Sbjct: 1053 GRSRDGLVG-YVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAI 1111
Query: 728 TEAAKEGIWLS*LVTDLGLHHDQAIVYCDSLSAICLTRDQVHYENQTH 871
+EA KE IWL L T+L ++CDS SAIC T+DQ+ +E H
Sbjct: 1112 SEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTKDQMFHERTKH 1159
Score = 144 bits (364), Expect(3) = 8e-93
Identities = 74/120 (61%), Positives = 92/120 (76%)
Frame = +1
Query: 7 YDSCVYYNKVKDGSFIYLVLYVDDMLLAAVNKSDIQKLKGLLNAKFDMKDLGAAKKILGM 186
YDSCVY KV DGS IYL+LYVDDML+AA +KS+I+KLK L+++F+MKDLGAAKKILGM
Sbjct: 873 YDSCVYL-KVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGM 931
Query: 187 EIYRNRSQGKLFLSQKDYIKKILSRFGMASTKPIDTPSASNAHLPMEFAPKSSEEKEYMS 366
EI R R GKL+LSQK YI+K+L RF M KP+ TP A++ L + P+S + EYMS
Sbjct: 932 EITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMS 991
Score = 57.0 bits (136), Expect(3) = 8e-93
Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Frame = +3
Query: 849 FITRTKHIDVRYHFLRG---EKRIKVNKVGTADNPADMFTKP 965
F RTKHIDVRYHF+RG E +KV K+ T DNPADM TKP
Sbjct: 1153 FHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKP 1194
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 192 bits (489), Expect(3) = 4e-92
Identities = 97/168 (57%), Positives = 121/168 (72%)
Frame = +2
Query: 368 VPYASAVGSLMYVMVYTRPNLAHAVSVVSRFMGEPGNEHWQAVKRIFRYLRGTSDMGLSY 547
VPY+SAVGSLMY MV +RP+L+HA+SVVSR+M PG EHW+AV+ IFRYLRGTS L +
Sbjct: 1321 VPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF 1380
Query: 548 GGDSQCIISRYYDSDYARDVDSRRSMTGYVFTLGGSVVRWRATLQFTVTLSTTETEYMAL 727
G ++ Y DSD+A D+D RS+ GYVFT+GG V W+A+LQ TV LSTTE EYMA+
Sbjct: 1381 GRSRDGLVG-YVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAI 1439
Query: 728 TEAAKEGIWLS*LVTDLGLHHDQAIVYCDSLSAICLTRDQVHYENQTH 871
+EA KE IWL L T L ++CDS SAICLT+DQ+ +E H
Sbjct: 1440 SEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKH 1487
Score = 140 bits (352), Expect(3) = 4e-92
Identities = 73/120 (60%), Positives = 90/120 (75%)
Frame = +1
Query: 7 YDSCVYYNKVKDGSFIYLVLYVDDMLLAAVNKSDIQKLKGLLNAKFDMKDLGAAKKILGM 186
YDSCVY KV DGS IYL+LYVDDML+AA +KS+I KLK L+++F+MKDLGAAKKILGM
Sbjct: 1201 YDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGM 1259
Query: 187 EIYRNRSQGKLFLSQKDYIKKILSRFGMASTKPIDTPSASNAHLPMEFAPKSSEEKEYMS 366
EI R R KL+LSQK YI+K+L RF M KP+ TP A++ L + P+S + EYMS
Sbjct: 1260 EITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMS 1319
Score = 54.3 bits (129), Expect(3) = 4e-92
Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Frame = +3
Query: 849 FITRTKHIDVRYHFLRG---EKRIKVNKVGTADNPADMFTKP 965
F RTKHIDVRYHF+RG E +K+ K+ DNPADM TKP
Sbjct: 1481 FHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKP 1522
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 196 bits (498), Expect(3) = 9e-92
Identities = 99/168 (58%), Positives = 124/168 (73%)
Frame = +2
Query: 368 VPYASAVGSLMYVMVYTRPNLAHAVSVVSRFMGEPGNEHWQAVKRIFRYLRGTSDMGLSY 547
VPY+SAV SLMY MV +RP+L+HA+SVVSR+M PG EHW+AV+ IFRYLRGTS L +
Sbjct: 1023 VPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF 1082
Query: 548 GGDSQCIISRYYDSDYARDVDSRRSMTGYVFTLGGSVVRWRATLQFTVTLSTTETEYMAL 727
G S ++ Y DSD+A D+D RRS+TGYVFT+GG V W+A+LQ TV LSTTE EYMA+
Sbjct: 1083 GRSSDGLVG-YVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAI 1141
Query: 728 TEAAKEGIWLS*LVTDLGLHHDQAIVYCDSLSAICLTRDQVHYENQTH 871
+EA KE IWL L T+L ++CDS SAICLT+DQ+ +E H
Sbjct: 1142 SEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKH 1189
Score = 135 bits (340), Expect(3) = 9e-92
Identities = 72/120 (60%), Positives = 90/120 (75%)
Frame = +1
Query: 7 YDSCVYYNKVKDGSFIYLVLYVDDMLLAAVNKSDIQKLKGLLNAKFDMKDLGAAKKILGM 186
YDSCVY KV DGS IYL+LYVDDML+AA +KS+I KLK L+++F+MKDLGAAKKILGM
Sbjct: 903 YDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGM 961
Query: 187 EIYRNRSQGKLFLSQKDYIKKILSRFGMASTKPIDTPSASNAHLPMEFAPKSSEEKEYMS 366
EI R R GKL+LSQK YI+K+L RF M K + T A++ L + P+S+ + EYMS
Sbjct: 962 EITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMS 1021
Score = 54.3 bits (129), Expect(3) = 9e-92
Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Frame = +3
Query: 849 FITRTKHIDVRYHFLRG---EKRIKVNKVGTADNPADMFTKP 965
F RTKHID+RYHF+RG E +KV K+ T DNP DM TKP
Sbjct: 1183 FHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKP 1224
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 190 bits (483), Expect(3) = 1e-91
Identities = 96/168 (57%), Positives = 120/168 (71%)
Frame = +2
Query: 368 VPYASAVGSLMYVMVYTRPNLAHAVSVVSRFMGEPGNEHWQAVKRIFRYLRGTSDMGLSY 547
VPY+S VGSLMY MV +RP+L+HA+SVVSR+M PG EHW+AV+ IFRYL GTS L +
Sbjct: 920 VPYSSVVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLCGTSSACLQF 979
Query: 548 GGDSQCIISRYYDSDYARDVDSRRSMTGYVFTLGGSVVRWRATLQFTVTLSTTETEYMAL 727
G ++ Y DSD+A D+D RRS+ GYVFT+GG V W+A LQ TV LSTTE EYMA+
Sbjct: 980 GRSRDGLVG-YVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAI 1038
Query: 728 TEAAKEGIWLS*LVTDLGLHHDQAIVYCDSLSAICLTRDQVHYENQTH 871
+EA KE IWL L T+L ++CDS SAICLT+DQ+ +E H
Sbjct: 1039 SEACKETIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKH 1086
Score = 140 bits (353), Expect(3) = 1e-91
Identities = 72/120 (60%), Positives = 91/120 (75%)
Frame = +1
Query: 7 YDSCVYYNKVKDGSFIYLVLYVDDMLLAAVNKSDIQKLKGLLNAKFDMKDLGAAKKILGM 186
YDSCVY KV DGS IYL+LYVDDML+AA +KS+I KLK L+++F+MKDLGAAKKILG+
Sbjct: 800 YDSCVY-PKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGI 858
Query: 187 EIYRNRSQGKLFLSQKDYIKKILSRFGMASTKPIDTPSASNAHLPMEFAPKSSEEKEYMS 366
EI + R GKL+LSQK YI+K+L RF M KP+ TP A++ L + P+S + EYMS
Sbjct: 859 EITKERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMS 918
Score = 54.7 bits (130), Expect(3) = 1e-91
Identities = 27/42 (64%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Frame = +3
Query: 849 FITRTKHIDVRYHFLRG---EKRIKVNKVGTADNPADMFTKP 965
F RTKHIDVRYHF+R E +KV K+ T DNPADM TKP
Sbjct: 1080 FHERTKHIDVRYHFIRSVITEGDVKVCKISTHDNPADMMTKP 1121
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 288 bits (738), Expect(2) = 3e-91
Identities = 143/189 (75%), Positives = 159/189 (84%), Gaps = 7/189 (3%)
Frame = +2
Query: 326 NLHLSRL-------KKRNTCPVPYASAVGSLMYVMVYTRPNLAHAVSVVSRFMGEPGNEH 484
N+HL+ + +K VPYASAVGSLMY MV TRP+LAHAVSVVSRFMG+PG EH
Sbjct: 1069 NIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREH 1128
Query: 485 WQAVKRIFRYLRGTSDMGLSYGGDSQCIISRYYDSDYARDVDSRRSMTGYVFTLGGSVVR 664
WQAVKRIFRYLRGTSD+GL YGGD+QC+++ Y DSDYA DVD+RRSMTGYVFTLGGSVV
Sbjct: 1129 WQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVS 1188
Query: 665 WRATLQFTVTLSTTETEYMALTEAAKEGIWLS*LVTDLGLHHDQAIVYCDSLSAICLTRD 844
W+ATLQ TVTLSTTE EYMALTEAAKEGIWL LV+DLGLHHDQA VYCDSLSAICL +D
Sbjct: 1189 WKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKD 1248
Query: 845 QVHYENQTH 871
QVH+E H
Sbjct: 1249 QVHHERTKH 1257
Score = 74.3 bits (181), Expect(2) = 3e-91
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +3
Query: 858 RTKHIDVRYHFLRGEKRIKVNKVGTADNPADMFTKP 965
RTKHIDVRYHFLR EKRIKV KVGTADNPADMFTKP
Sbjct: 1254 RTKHIDVRYHFLRSEKRIKVKKVGTADNPADMFTKP 1289
Score = 182 bits (461), Expect = 1e-43
Identities = 88/120 (73%), Positives = 105/120 (87%)
Frame = +1
Query: 7 YDSCVYYNKVKDGSFIYLVLYVDDMLLAAVNKSDIQKLKGLLNAKFDMKDLGAAKKILGM 186
YD CVYYN++ D SFIYLVLYVDDML+AA K DIQKLKGLL+A+F+MKDLGAA+KILGM
Sbjct: 969 YDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGM 1028
Query: 187 EIYRNRSQGKLFLSQKDYIKKILSRFGMASTKPIDTPSASNAHLPMEFAPKSSEEKEYMS 366
EI R+R + KLFLSQ+ YI+K+L+RFGM+S+KPIDTPSA+N HL FAP+S EEKEYMS
Sbjct: 1029 EIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMS 1088