BLASTX nr result
ID: Lithospermum22_contig00029904
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00029904
(1466 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2... 374 e-159
ref|XP_002526000.1| cleavage and polyadenylation specificity fac... 314 e-141
ref|NP_178282.2| cleavage and polyadenylation specificity factor... 324 e-140
gb|AAN87883.1| FEG protein [Arabidopsis thaliana] 317 e-137
gb|AAD12712.1| putative cleavage and polyadenylation specifity f... 281 e-127
>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
predicted protein [Populus trichocarpa]
Length = 639
Score = 374 bits (961), Expect(2) = e-159
Identities = 193/348 (55%), Positives = 245/348 (70%), Gaps = 2/348 (0%)
Frame = -3
Query: 1140 DQPEVCNFDRSIINAPGPCVLFATPGMISGGFSLEVFKQWAPYEANLITLPGYCVAGTIG 961
D V NFDRS+INAPGPCVLFATPGMISGGFSLEVFKQWAP E NLITLPGYCVAGT+G
Sbjct: 300 DFKHVHNFDRSLINAPGPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVG 359
Query: 960 HKLMSAKTPTTIRLDEGTQVDVRCQIHQLSFSPHTDAKGIMDLIKFLSPKNVILVHGEKP 781
HKLMS K PT I LD+ TQ+DVRCQIHQLSFSPHTD+KGIMDL KFLSP+NVILVHGEKP
Sbjct: 360 HKLMSGK-PTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMDLTKFLSPRNVILVHGEKP 418
Query: 780 KMAVLKERVQSELKIECFFPANNETVRLPSSHSIKALATDEFLKSSLNPNFKFLRPSIVE 601
KM LKER+Q+EL+I C+ PAN + V +PS+ +KA A++ F++S LNPNF+FL+ S +
Sbjct: 419 KMVSLKERIQTELRIPCYLPANCDAVHIPSTIYVKAHASNTFIRSCLNPNFRFLKRSKED 478
Query: 600 NSSPGAGDMR-TPPLQVFDDRIAEAVLLMQKNEYPKAVHQKELEKLLSEQSHSVTFSHCF 424
NS + T PLQV D+R+AE +L+M+K + + VHQ +L +L ++ H V F++C
Sbjct: 479 NSDQVLRNTNPTAPLQVNDERVAEGILIMEKGKKARVVHQDDLLLMLRQKKHDVQFAYCC 538
Query: 423 PV-VYNDSRNRTEDSASSNNTKMTSDLDERXXXXXXXXXLSDKCNNLTIQACEGKVQVES 247
+ N R D A + K +S LS+ + + I+ +QVES
Sbjct: 539 AAQLDNLEETRNRDDALGLSDKCSS-------LQLLFKELSNYFSGVNIEDLGEHLQVES 591
Query: 246 FTASVCSRDNCPHRTTSTSSYETKVVYFCCNWSASDDEIAWKIILTMK 103
F SVC +DNCP+R S E VYFCC+WSA+D+++AW+II M+
Sbjct: 592 FHVSVCLKDNCPYRIIDNSQKEAVTVYFCCSWSAADEKLAWEIISAME 639
Score = 214 bits (546), Expect(2) = e-159
Identities = 101/113 (89%), Positives = 109/113 (96%)
Frame = -1
Query: 1466 GDYNMTPDRHLGAAQIDRLPLDLVITESTYATTFRDSKYAKEREFLKAVHNCVAGGGKVL 1287
GDYNMTPDRHLGAAQIDRL LDL+ITESTYATT RDSKYA+EREFLKAVH CVAGGGKVL
Sbjct: 176 GDYNMTPDRHLGAAQIDRLELDLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVL 235
Query: 1286 IPTFALGRAQELCMLLDDYWKRMNIKAPIYFSAGLTIQANMYYKMLINWTSQK 1128
IPTFALGRAQELC+LLDDYW+RMN+K PIYFSAGLTIQAN+YYK+LI+WTSQK
Sbjct: 236 IPTFALGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANLYYKILISWTSQK 288
>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis] gi|223534732|gb|EEF36424.1| cleavage and
polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 314 bits (805), Expect(2) = e-141
Identities = 156/263 (59%), Positives = 202/263 (76%), Gaps = 1/263 (0%)
Frame = -3
Query: 1140 DQPEVCNFDRSIINAPGPCVLFATPGMISGGFSLEVFKQWAPYEANLITLPGYCVAGTIG 961
D V FDRS+++APGPCVLFATPGMISGGFSLEVFK+WAP E NL+TLPGYCVAGTIG
Sbjct: 300 DFKNVYTFDRSLLDAPGPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIG 359
Query: 960 HKLMSAKTPTTIRLDEGTQVDVRCQIHQLSFSPHTDAKGIMDLIKFLSPKNVILVHGEKP 781
HKLMS K P+ I LD+ TQ+DVRCQIHQLSFSPHTDAKGIMDL+KFLSPK+VILVHGEKP
Sbjct: 360 HKLMSGK-PSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKP 418
Query: 780 KMAVLKERVQSELKIECFFPANNETVRLPSSHSIKALATDEFLKSSLNPNFKFLRPSIVE 601
KMA LKER+QSEL+I+C+ PAN ET+ +PS+ +KA A++ F++S L+PNF+FL S+ +
Sbjct: 419 KMASLKERIQSELEIQCYVPANCETLCIPSTLFVKADASEAFIRSCLSPNFRFLNKSLKD 478
Query: 600 NSSPGAGDMR-TPPLQVFDDRIAEAVLLMQKNEYPKAVHQKELEKLLSEQSHSVTFSHCF 424
S T L+V D+R+AE +L+++KN+ + VHQ EL +L + H V F++C
Sbjct: 479 TSDLVLHSTNATSRLEVSDERVAEGILVVEKNKKARVVHQDELLLMLGAKQHEVQFAYCC 538
Query: 423 PVVYNDSRNRTEDSASSNNTKMT 355
PV ++ D +S+++ +T
Sbjct: 539 PVQVDNMDQTRRDPSSTHDELLT 561
Score = 216 bits (549), Expect(2) = e-141
Identities = 102/113 (90%), Positives = 107/113 (94%)
Frame = -1
Query: 1466 GDYNMTPDRHLGAAQIDRLPLDLVITESTYATTFRDSKYAKEREFLKAVHNCVAGGGKVL 1287
GDYNMTPDRHLGAAQIDRL LDL+ITESTYATT RDSKYA+EREFLK VH CVAGGGKVL
Sbjct: 176 GDYNMTPDRHLGAAQIDRLQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVL 235
Query: 1286 IPTFALGRAQELCMLLDDYWKRMNIKAPIYFSAGLTIQANMYYKMLINWTSQK 1128
IPTFALGRAQELC+LLDDYW+RMN+K PIYFSAGLTIQANMYYKMLI WTSQK
Sbjct: 236 IPTFALGRAQELCLLLDDYWERMNLKVPIYFSAGLTIQANMYYKMLIGWTSQK 288
>ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and
polyadenylation specifity factor [Arabidopsis thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation
specificity factor subunit 3-II [Arabidopsis thaliana]
Length = 613
Score = 324 bits (831), Expect(2) = e-140
Identities = 176/353 (49%), Positives = 228/353 (64%), Gaps = 2/353 (0%)
Frame = -3
Query: 1155 NAHQ-LDQPEVCNFDRSIINAPGPCVLFATPGMISGGFSLEVFKQWAPYEANLITLPGYC 979
N H D V +FDRS+I+APGPCVLFATPGM+ GFSLEVFK WAP NL+ LPGY
Sbjct: 294 NTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYS 353
Query: 978 VAGTIGHKLMSAKTPTTIRLDEGTQVDVRCQIHQLSFSPHTDAKGIMDLIKFLSPKNVIL 799
VAGT+GHKLM+ K PTT+ L GT+VDVRC++HQ++FSPHTDAKGIMDL KFLSPKNV+L
Sbjct: 354 VAGTVGHKLMAGK-PTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVL 412
Query: 798 VHGEKPKMAVLKERVQSELKIECFFPANNETVRLPSSHSIKALATDEFLKSSLNPNFKFL 619
VHGEKP M +LKE++ SEL I CF PAN ETV S+ IKA A+D FLKS NPNFKF
Sbjct: 413 VHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKF- 471
Query: 618 RPSIVENSSPGAGDMRTPPLQVFDDRIAEAVLLMQKNEYPKAVHQKELEKLLSEQSHSVT 439
NS+ L+V D R A+ VL+++K++ K VHQ E+ ++L E++H V+
Sbjct: 472 -----SNST---------QLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVS 517
Query: 438 FSHCFPV-VYNDSRNRTEDSASSNNTKMTSDLDERXXXXXXXXXLSDKCNNLTIQACEGK 262
+HC PV V +S + D + K+ + + I E
Sbjct: 518 LAHCCPVKVKGESEDDDVDLIKQLSAKILKTV-----------------SGAQIHESENC 560
Query: 261 VQVESFTASVCSRDNCPHRTTSTSSYETKVVYFCCNWSASDDEIAWKIILTMK 103
+QV SF S+C +D C HR++S+SS + V+ CCNWS +D E+ W+II +K
Sbjct: 561 LQVASFKGSLCLKDKCMHRSSSSSS---EAVFLCCNWSIADLELGWEIINAIK 610
Score = 201 bits (511), Expect(2) = e-140
Identities = 95/112 (84%), Positives = 104/112 (92%)
Frame = -1
Query: 1466 GDYNMTPDRHLGAAQIDRLPLDLVITESTYATTFRDSKYAKEREFLKAVHNCVAGGGKVL 1287
GDYNMT DRHLGAA+IDRL LDL+I+ESTYATT R SKY +EREFL+AVH CVAGGGK L
Sbjct: 176 GDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKAL 235
Query: 1286 IPTFALGRAQELCMLLDDYWKRMNIKAPIYFSAGLTIQANMYYKMLINWTSQ 1131
IP+FALGRAQELCMLLDDYW+RMNIK PIYFS+GLTIQANMYYKMLI+WTSQ
Sbjct: 236 IPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQ 287
>gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 317 bits (811), Expect(2) = e-137
Identities = 173/353 (49%), Positives = 225/353 (63%), Gaps = 2/353 (0%)
Frame = -3
Query: 1155 NAHQ-LDQPEVCNFDRSIINAPGPCVLFATPGMISGGFSLEVFKQWAPYEANLITLPGYC 979
N H D V +FDRS+I+APGPCVLFA PGM+ G SLEVFK WAP NL+ L GY
Sbjct: 294 NTHNPFDFKNVKDFDRSLIHAPGPCVLFAIPGMLCAGLSLEVFKHWAPSPLNLVALLGYS 353
Query: 978 VAGTIGHKLMSAKTPTTIRLDEGTQVDVRCQIHQLSFSPHTDAKGIMDLIKFLSPKNVIL 799
VAGT+GHKLM+ K PTT+ L GT+VDVRC++HQ++FSPHTDAKGIMDL KFLSPKNV+L
Sbjct: 354 VAGTVGHKLMAGK-PTTVDLHNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVL 412
Query: 798 VHGEKPKMAVLKERVQSELKIECFFPANNETVRLPSSHSIKALATDEFLKSSLNPNFKFL 619
VHGEKP M +LKE++ SEL I CF PAN ETV S+ IKA A+D FLKS NPNFKF
Sbjct: 413 VHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKF- 471
Query: 618 RPSIVENSSPGAGDMRTPPLQVFDDRIAEAVLLMQKNEYPKAVHQKELEKLLSEQSHSVT 439
NS+ L+V D R A+ VL+++K++ K VHQ E+ ++L E++H V+
Sbjct: 472 -----SNST---------QLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVS 517
Query: 438 FSHCFPV-VYNDSRNRTEDSASSNNTKMTSDLDERXXXXXXXXXLSDKCNNLTIQACEGK 262
+HC PV V +S + D + K+ + + I E
Sbjct: 518 LAHCCPVKVKGESEDDDVDLIKQLSAKILKTV-----------------SGAQIHESENC 560
Query: 261 VQVESFTASVCSRDNCPHRTTSTSSYETKVVYFCCNWSASDDEIAWKIILTMK 103
+QV SF S+C +D C HR++S+SS + V+ CCNWS +D E+ W+II +K
Sbjct: 561 LQVASFKGSLCLKDKCMHRSSSSSS---EAVFLCCNWSIADLELGWEIINAIK 610
Score = 201 bits (511), Expect(2) = e-137
Identities = 95/112 (84%), Positives = 104/112 (92%)
Frame = -1
Query: 1466 GDYNMTPDRHLGAAQIDRLPLDLVITESTYATTFRDSKYAKEREFLKAVHNCVAGGGKVL 1287
GDYNMT DRHLGAA+IDRL LDL+I+ESTYATT R SKY +EREFL+AVH CVAGGGK L
Sbjct: 176 GDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKAL 235
Query: 1286 IPTFALGRAQELCMLLDDYWKRMNIKAPIYFSAGLTIQANMYYKMLINWTSQ 1131
IP+FALGRAQELCMLLDDYW+RMNIK PIYFS+GLTIQANMYYKMLI+WTSQ
Sbjct: 236 IPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQ 287
>gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 281 bits (720), Expect(2) = e-127
Identities = 145/247 (58%), Positives = 179/247 (72%), Gaps = 1/247 (0%)
Frame = -3
Query: 1155 NAHQ-LDQPEVCNFDRSIINAPGPCVLFATPGMISGGFSLEVFKQWAPYEANLITLPGYC 979
N H D V +FDRS+I+APGPCVLFATPGM+ GFSLEVFK WAP NL+ LPGY
Sbjct: 294 NTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYS 353
Query: 978 VAGTIGHKLMSAKTPTTIRLDEGTQVDVRCQIHQLSFSPHTDAKGIMDLIKFLSPKNVIL 799
VAGT+GHKLM+ K PTT+ L GT+VDVRC++HQ++FSPHTDAKGIMDL KFLSPKNV+L
Sbjct: 354 VAGTVGHKLMAGK-PTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVL 412
Query: 798 VHGEKPKMAVLKERVQSELKIECFFPANNETVRLPSSHSIKALATDEFLKSSLNPNFKFL 619
VHGEKP M +LKE++ SEL I CF PAN ETV S+ IKA A+D FLKS NPNFKF
Sbjct: 413 VHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKF- 471
Query: 618 RPSIVENSSPGAGDMRTPPLQVFDDRIAEAVLLMQKNEYPKAVHQKELEKLLSEQSHSVT 439
NS+ L+V D R A+ VL+++K++ K VHQ E+ ++L E++H V+
Sbjct: 472 -----SNST---------QLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVS 517
Query: 438 FSHCFPV 418
+HC PV
Sbjct: 518 LAHCCPV 524
Score = 201 bits (511), Expect(2) = e-127
Identities = 95/112 (84%), Positives = 104/112 (92%)
Frame = -1
Query: 1466 GDYNMTPDRHLGAAQIDRLPLDLVITESTYATTFRDSKYAKEREFLKAVHNCVAGGGKVL 1287
GDYNMT DRHLGAA+IDRL LDL+I+ESTYATT R SKY +EREFL+AVH CVAGGGK L
Sbjct: 176 GDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKAL 235
Query: 1286 IPTFALGRAQELCMLLDDYWKRMNIKAPIYFSAGLTIQANMYYKMLINWTSQ 1131
IP+FALGRAQELCMLLDDYW+RMNIK PIYFS+GLTIQANMYYKMLI+WTSQ
Sbjct: 236 IPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQ 287