BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00029752
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|2...   179   2e-43
ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41
ref|XP_002522334.1| pentatricopeptide repeat-containing protein,...   165   3e-39
ref|NP_195434.1| pentatricopeptide repeat-containing protein [Ar...   165   3e-39
ref|XP_003610927.1| Pentatricopeptide repeat-containing protein ...   164   7e-39

>ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|222867101|gb|EEF04232.1|
           predicted protein [Populus trichocarpa]
          Length = 676

 Score =  179 bits (455), Expect = 2e-43
 Identities = 82/107 (76%), Positives = 96/107 (89%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MYGKCGSI EAR IFD+ + +D+V+WTAMIDRYF+D R  +GF LF+DL+ SGI+PNEFT
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
           F+G+LNAC  QTSEELGK+VHGYMTRVGF+PFSFAASALVHMYSKCG
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCG 353



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
 Frame = +3

Query: 6   YGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMS-GIKPNEFT 182
           Y K G + EA+ +FD+  ++D  SWTAMI  Y    R N+   LF  +  S   K N+FT
Sbjct: 146 YAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFT 205

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
            +  L A        +GK++HGY+ R G +      SAL  MY KCG
Sbjct: 206 VSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCG 252



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 26/68 (38%), Positives = 43/68 (63%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MY KCG++  A  +F +T Q D+ SWT++I  Y ++ + ++    F  L+ SG +P+  T
Sbjct: 348 MYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHIT 407

Query: 183 FAGILNAC 206
           F G+L+AC
Sbjct: 408 FVGVLSAC 415


>ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  172 bits (435), Expect = 3e-41
 Identities = 79/107 (73%), Positives = 92/107 (85%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MYGKCGSI EAR IFD+T+ +DVVSWTAMIDRYF++ R  +GF LFSDL+ SGI PNEFT
Sbjct: 266 MYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFT 325

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
           F+G+LNAC    +EELGKQVHGYMTR+GF+P SFAAS LVHMY+KCG
Sbjct: 326 FSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCG 372



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
 Frame = +3

Query: 6   YGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMM-SGIKPNEFT 182
           Y K G + EAR +FDQ  ++D  SWTAM   Y    +  +   LF  +      K N+FT
Sbjct: 165 YAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFT 224

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
            +  L A     S  LGK++HG++ R+G +      SAL  MY KCG
Sbjct: 225 MSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCG 271



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/69 (40%), Positives = 45/69 (65%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MY KCG+I  AR +F+   + D+VSWT++I  Y ++ + ++    F  L+ SG +P+  T
Sbjct: 367 MYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHIT 426

Query: 183 FAGILNACT 209
           F G+L+ACT
Sbjct: 427 FVGVLSACT 435


>ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538412|gb|EEF40018.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score =  165 bits (418), Expect = 3e-39
 Identities = 77/107 (71%), Positives = 90/107 (84%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MYGKCGSI EAR IFD+ + +DVV+WTAMIDRYFED R  +GF LF++L+ SGIKPN+FT
Sbjct: 257 MYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDFT 316

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
           FAG+LNAC     E +GKQVHG+MTR  F+PFSFAASALVHMYSKCG
Sbjct: 317 FAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCG 363



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +3

Query: 12  KCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMM-SGIKPNEFTFA 188
           K G + EAR +FD   ++D  SWTAMI  Y    R ++   L+  +     +  N+FT +
Sbjct: 158 KMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVS 217

Query: 189 GILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
            +L A        +GK++HGY+ R G +      SAL  MY KCG
Sbjct: 218 SVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCG 262



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MY KCG++  A  +F    Q D+VSWT++I  Y ++   ++    F  L+ SG +P+  T
Sbjct: 358 MYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPDHIT 417

Query: 183 FAGILNACTQQTSEELGKQ-VHGYMTRV 263
           F G+L+AC      + G Q  H  M ++
Sbjct: 418 FVGVLSACAHAGLVDKGLQYFHSIMDKL 445


>ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75097747|sp|O23169.1|PP353_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g37170 gi|2464864|emb|CAB16758.1| putative protein
           [Arabidopsis thaliana] gi|7270666|emb|CAB80383.1|
           putative protein [Arabidopsis thaliana]
           gi|332661361|gb|AEE86761.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  165 bits (418), Expect = 3e-39
 Identities = 75/107 (70%), Positives = 93/107 (86%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MYGKCG I EAR IFD+ ++KDVVSWT+MIDRYF+ +RW +GF LFS+L+ S  +PNE+T
Sbjct: 262 MYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYT 321

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
           FAG+LNAC   T+EELGKQVHGYMTRVGF+P+SFA+S+LV MY+KCG
Sbjct: 322 FAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCG 368



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
 Frame = +3

Query: 6   YGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLM-MSGIKPNEFT 182
           Y + G + EAR +FD+  +KD  SWTAM+  Y +  +  +  +L+S +  +   +PN FT
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
            +  + A         GK++HG++ R G +      S+L+ MY KCG
Sbjct: 221 VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG 267



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/77 (36%), Positives = 44/77 (57%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           MY KCG+I  A+ + D   + D+VSWT++I    ++ + ++    F  L+ SG KP+  T
Sbjct: 363 MYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVT 422

Query: 183 FAGILNACTQQTSEELG 233
           F  +L+ACT     E G
Sbjct: 423 FVNVLSACTHAGLVEKG 439


>ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512262|gb|AES93885.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  164 bits (415), Expect = 7e-39
 Identities = 74/107 (69%), Positives = 89/107 (83%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           +YGKCGS+ EAR IFDQ   KD+VSWT MI R FED R  +GF LF DLM SG++PNE+T
Sbjct: 240 LYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYT 299

Query: 183 FAGILNACTQQTSEELGKQVHGYMTRVGFNPFSFAASALVHMYSKCG 323
           FAG+LNAC    +E++GK+VHGYMTRVG++PFSFAASALVH+YSKCG
Sbjct: 300 FAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCG 346



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDLMMSGIKPNEFT 182
           +Y KCG+   AR +F+Q  + D+VSWT++I  Y ++ + +     F  L+ SG KP+E T
Sbjct: 341 VYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEIT 400

Query: 183 FAGILNACTQQTSEELG-------KQVHG 248
           F G+L+ACT     ++G       K+ HG
Sbjct: 401 FVGVLSACTHAGLVDIGLEYFHSVKEKHG 429



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 32/139 (23%)
 Frame = +3

Query: 3   MYGKCGSIYEARVIFDQTMQKDVVSWTAMIDRYFEDARWNDGFLLFSDL----------M 152
           MY KCGS+ +A+++FD+  QKD+ SW  MI  Y    R      LF ++          +
Sbjct: 107 MYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAV 166

Query: 153 MSG----------------IKPNE------FTFAGILNACTQQTSEELGKQVHGYMTRVG 266
           +SG                ++ NE      FT +  L A    +S   GK++HGY+ R G
Sbjct: 167 ISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSG 226

Query: 267 FNPFSFAASALVHMYSKCG 323
                   +AL+ +Y KCG
Sbjct: 227 LELDEVVWTALLDLYGKCG 245