BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00029329
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     271   4e-71
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   266   1e-69
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   262   2e-68
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   261   3e-68
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   258   5e-67

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  271 bits (692), Expect(2) = 4e-71
 Identities = 127/159 (79%), Positives = 143/159 (89%)
 Frame = -3

Query: 481 ERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYGFVYLMRHKHESFEKFKEFQN 302
           ERASDLL ++HTDVCGPM+++ARGGY YFITFTDD+SRYG++YLMRHK ESFEKFKEFQN
Sbjct: 490 ERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQN 549

Query: 301 EVQNQLNKTIKILRSDRGGEYLSHEFNTHLRECGIVSQLTPAGTPQHNGVSERRNRTLLD 122
           EVQN L KTIK LRSDRGGEY+S EF  HL++CGIV QLTP GTPQ NGVSERRNRTLLD
Sbjct: 550 EVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLD 609

Query: 121 MVRSMMSLSDLPVNFWGYALLSATLTLNKCPTKSVEKTP 5
           MVRSMMS SDLP++FWGYAL +A LTLN+ P+KSVEKTP
Sbjct: 610 MVRSMMSQSDLPLSFWGYALETAALTLNRVPSKSVEKTP 648



 Score = 22.7 bits (47), Expect(2) = 4e-71
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 513 KMTKSPFTGY 484
           KMTK+PFTG+
Sbjct: 479 KMTKAPFTGH 488


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  266 bits (679), Expect(2) = 1e-69
 Identities = 127/159 (79%), Positives = 140/159 (88%)
 Frame = -3

Query: 481 ERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYGFVYLMRHKHESFEKFKEFQN 302
           ERASDLLG+IHTDVCGPM+TSARG Y YFITFTDD+SRYG+VYLM+HK +SFE FKEFQN
Sbjct: 134 ERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQN 193

Query: 301 EVQNQLNKTIKILRSDRGGEYLSHEFNTHLRECGIVSQLTPAGTPQHNGVSERRNRTLLD 122
           EVQNQ  K+IK LRSDRGGEYLS  F+ HLRECGIVSQLTP GTPQ NGVSERRNRTLLD
Sbjct: 194 EVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLD 253

Query: 121 MVRSMMSLSDLPVNFWGYALLSATLTLNKCPTKSVEKTP 5
           MVRSMMS +DLP  FWGYAL ++   LN+CP+KSVEKTP
Sbjct: 254 MVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTP 292



 Score = 22.7 bits (47), Expect(2) = 1e-69
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 513 KMTKSPFTGY 484
           KMTK+PFTG+
Sbjct: 123 KMTKAPFTGH 132


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  262 bits (670), Expect = 2e-68
 Identities = 125/160 (78%), Positives = 140/160 (87%)
 Frame = -3

Query: 484  HERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYGFVYLMRHKHESFEKFKEFQ 305
            +ERASDLL +IHTDVCGPM+T+ARGG+ YFITFTDDYSRYG++YLMRHK ESFEKFKEFQ
Sbjct: 577  NERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQ 636

Query: 304  NEVQNQLNKTIKILRSDRGGEYLSHEFNTHLRECGIVSQLTPAGTPQHNGVSERRNRTLL 125
            NEVQNQL KTIK LRSDRGGE+LS EF  HL++CGIV QLTP  TPQ NGVSER NRTLL
Sbjct: 637  NEVQNQLGKTIKSLRSDRGGEFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLL 696

Query: 124  DMVRSMMSLSDLPVNFWGYALLSATLTLNKCPTKSVEKTP 5
            DMVR MMS SDLP+ FWGYAL +A  TLN+ P+KSV+KTP
Sbjct: 697  DMVRLMMSQSDLPLYFWGYALETAAFTLNRVPSKSVDKTP 736


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score =  261 bits (668), Expect = 3e-68
 Identities = 122/159 (76%), Positives = 142/159 (89%)
 Frame = -3

Query: 481 ERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYGFVYLMRHKHESFEKFKEFQN 302
           E+AS+LLG++HTDVCGPM+++ARGG+ YFITFT+D+SRYG+VYLMRHK +SFEKFKEFQN
Sbjct: 375 EKASELLGLVHTDVCGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQN 434

Query: 301 EVQNQLNKTIKILRSDRGGEYLSHEFNTHLRECGIVSQLTPAGTPQHNGVSERRNRTLLD 122
           EVQN L KTIK LRSDRGGEYLS EF  HL+ECGIV QLTP GTPQ NGVSERRNRTLLD
Sbjct: 435 EVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLD 494

Query: 121 MVRSMMSLSDLPVNFWGYALLSATLTLNKCPTKSVEKTP 5
           MVRSMMS +DLP++FWGY L +A  TLN+ P+KSV+KTP
Sbjct: 495 MVRSMMSQTDLPLSFWGYTLETAAFTLNRVPSKSVDKTP 533


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1248

 Score =  258 bits (658), Expect = 5e-67
 Identities = 120/159 (75%), Positives = 141/159 (88%)
 Frame = -3

Query: 481 ERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYGFVYLMRHKHESFEKFKEFQN 302
           ERAS+LLG++HTDVCGPM+++ARGG+ YFITFTD++SRYG+VYLMRHK ESFEKF+EFQN
Sbjct: 455 ERASELLGLVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQN 514

Query: 301 EVQNQLNKTIKILRSDRGGEYLSHEFNTHLRECGIVSQLTPAGTPQHNGVSERRNRTLLD 122
           EVQN L KTIK LRSDRGGEYLS E+  HL+ECGIV QLTP GTPQ N VSERRNR LLD
Sbjct: 515 EVQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLD 574

Query: 121 MVRSMMSLSDLPVNFWGYALLSATLTLNKCPTKSVEKTP 5
           MVRSMMS +D+P++FWGYAL +A  TLN+ P+KSV+KTP
Sbjct: 575 MVRSMMSQTDMPLSFWGYALETAAFTLNRVPSKSVDKTP 613