BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00029273
         (1258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           253   8e-82
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   247   3e-80
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         246   5e-80
gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana]               246   5e-80
emb|CAB40035.1| retrotransposon like protein [Arabidopsis thalia...   245   9e-77

>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  253 bits (646), Expect(3) = 8e-82
 Identities = 129/277 (46%), Positives = 181/277 (65%), Gaps = 1/277 (0%)
 Frame = +1

Query: 427  FLGGVCVAQLTGLFLHQTKYASDLLVRTGMTNCSSVSTPMVTRSQWSDDDNSPLFDDPSL 606
            FLG    +   GLFLHQT YA D+L +  M+NC+S+ TP+    Q  ++ NS LF +P+ 
Sbjct: 1115 FLGVEIESSPEGLFLHQTAYAKDILHQAAMSNCNSMPTPL---PQHIENLNSDLFPEPTY 1171

Query: 607  YRSIAGALQYLTFTRSNNQFVINQVCQYMHQPTQSHYVVVKRILRYIKGTLSVGLHIRCG 786
            +RS+AG LQYLT TR + QF +N +CQ MH PT + + ++KRILRY+KGT+ +GLHI+  
Sbjct: 1172 FRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTADFGLLKRILRYVKGTIHLGLHIKKN 1231

Query: 787  SLSSILIYSDADWASCPTTLRSTIDFYIFLGTNMVCWSSKKQATVSCSTAEAEYRAVAQL 966
               S++ YSD+DWA C  T RST  F   LG N++ WS+K+Q TVS S+ EAEYRA+  +
Sbjct: 1232 QNLSLVAYSDSDWAGCKETRRSTTGFCTLLGCNLISWSAKRQETVSKSSTEAEYRALTAV 1291

Query: 967  VAELEWLQSLLHELGVTVDSHPT-VLCDNISTTYMASNPIKHARIKHIGIDIQFVRERVA 1143
              EL WL  LL ++GVT  +HPT V CDN+S  Y+++NP  H R KH   D  ++RE+VA
Sbjct: 1292 AQELTWLSFLLRDIGVT-QTHPTLVKCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVA 1350

Query: 1144 KGTLKVSYVPTVDQLTNLFTKSLSLVSFKTLCSNLGI 1254
             G ++  ++    QL ++FTK L   +F  L   LG+
Sbjct: 1351 LGLVETKHISATLQLADIFTKPLPRRAFIDLRIKLGV 1387



 Score = 62.4 bits (150), Expect(3) = 8e-82
 Identities = 33/71 (46%), Positives = 42/71 (59%)
 Frame = +2

Query: 233  LMTCGFSNSRADSSMFILKSRSAMAILLLYVDDILLTPSSQVLLEHVIGKLKSEFDTIDL 412
            L+  GFS S++D S+F         +LLLYVDDILLT S   LL+ ++  L   F   DL
Sbjct: 1050 LLDFGFSCSKSDPSLFTYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSLNKRFSMKDL 1109

Query: 413  GELSYFLGVSV 445
            G  SYFLGV +
Sbjct: 1110 GAPSYFLGVEI 1120



 Score = 37.7 bits (86), Expect(3) = 8e-82
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 129  LNETVYLKQPTRFVNADFPHHLCRLNKAFYG 221
            L E VY+ QP  FV+ + P ++CRL KA YG
Sbjct: 1004 LKEPVYMLQPPGFVDQEKPSYVCRLTKALYG 1034


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
            Arabidopsis thaliana BAC gb|AF080119 and is a member of
            the reverse transcriptase family PF|00078 [Arabidopsis
            thaliana]
          Length = 1415

 Score =  247 bits (630), Expect(3) = 3e-80
 Identities = 126/276 (45%), Positives = 177/276 (64%)
 Frame = +1

Query: 427  FLGGVCVAQLTGLFLHQTKYASDLLVRTGMTNCSSVSTPMVTRSQWSDDDNSPLFDDPSL 606
            FLG        GLFLHQT YA+D+L + GM++C+ + TP+    Q  D+ NS LF +P+ 
Sbjct: 1089 FLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPL---PQQLDNLNSELFAEPTY 1145

Query: 607  YRSIAGALQYLTFTRSNNQFVINQVCQYMHQPTQSHYVVVKRILRYIKGTLSVGLHIRCG 786
            +RS+AG LQYLT TR + QF +N +CQ MH PT S + ++KRILRYIKGT+ +GL I+  
Sbjct: 1146 FRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRN 1205

Query: 787  SLSSILIYSDADWASCPTTLRSTIDFYIFLGTNMVCWSSKKQATVSCSTAEAEYRAVAQL 966
            S  ++  YSD+D A C  T RST  F I LG+N++ WS+K+Q TVS S+ EAEYRA+   
Sbjct: 1206 STLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYA 1265

Query: 967  VAELEWLQSLLHELGVTVDSHPTVLCDNISTTYMASNPIKHARIKHIGIDIQFVRERVAK 1146
              E+ W+  LL +LG+       V CDN+S  Y+++NP  H R KH   D  ++RE+VA 
Sbjct: 1266 AREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVAL 1325

Query: 1147 GTLKVSYVPTVDQLTNLFTKSLSLVSFKTLCSNLGI 1254
            G ++  ++    QL ++FTKSL   +F  L S LG+
Sbjct: 1326 GLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGV 1361



 Score = 63.2 bits (152), Expect(3) = 3e-80
 Identities = 33/71 (46%), Positives = 44/71 (61%)
 Frame = +2

Query: 233  LMTCGFSNSRADSSMFILKSRSAMAILLLYVDDILLTPSSQVLLEHVIGKLKSEFDTIDL 412
            L+  GF  S++D S+F+      +  LLLYVDDILLT S Q LLE ++  LK+ F   DL
Sbjct: 1024 LLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDL 1083

Query: 413  GELSYFLGVSV 445
            G   YFLG+ +
Sbjct: 1084 GPPRYFLGIQI 1094



 Score = 37.7 bits (86), Expect(3) = 3e-80
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 129  LNETVYLKQPTRFVNADFPHHLCRLNKAFYG 221
            L E V++ QP+ F++   P H+CRL KA YG
Sbjct: 978  LQEPVFMYQPSGFIDPQKPTHVCRLTKAIYG 1008


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  246 bits (627), Expect(3) = 5e-80
 Identities = 123/276 (44%), Positives = 178/276 (64%)
 Frame = +1

Query: 427  FLGGVCVAQLTGLFLHQTKYASDLLVRTGMTNCSSVSTPMVTRSQWSDDDNSPLFDDPSL 606
            FLG    +   GLFLHQ  YASD+L + GMT C+ + TP+    Q  +D NS  F++P+ 
Sbjct: 1107 FLGIEIESYNNGLFLHQHAYASDILHQAGMTECNPMPTPL---PQHLEDLNSEPFEEPTY 1163

Query: 607  YRSIAGALQYLTFTRSNNQFVINQVCQYMHQPTQSHYVVVKRILRYIKGTLSVGLHIRCG 786
            +RS+AG LQYLT TR + Q+ +N +CQ MH PT S + ++KRILRY+KGT+++GL IR  
Sbjct: 1164 FRSLAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKH 1223

Query: 787  SLSSILIYSDADWASCPTTLRSTIDFYIFLGTNMVCWSSKKQATVSCSTAEAEYRAVAQL 966
                +  + D+D+A C  T RST  F I LG+ ++ WS+K+Q T+S S+ EAEYRA++  
Sbjct: 1224 HNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDT 1283

Query: 967  VAELEWLQSLLHELGVTVDSHPTVLCDNISTTYMASNPIKHARIKHIGIDIQFVRERVAK 1146
              E+ W+ SLL +LG++      V CDN+S  Y+++NP  H R KH   D  ++RERVA 
Sbjct: 1284 AREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVAL 1343

Query: 1147 GTLKVSYVPTVDQLTNLFTKSLSLVSFKTLCSNLGI 1254
            G ++  ++P   QL ++FTKSL    F TL + LG+
Sbjct: 1344 GLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGV 1379



 Score = 62.0 bits (149), Expect(3) = 5e-80
 Identities = 31/71 (43%), Positives = 43/71 (60%)
 Frame = +2

Query: 233  LMTCGFSNSRADSSMFILKSRSAMAILLLYVDDILLTPSSQVLLEHVIGKLKSEFDTIDL 412
            L+  GF  S +D S+F+        ILLLYVDDILLT S Q+L++ ++  L + F   DL
Sbjct: 1042 LLDFGFECSTSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDL 1101

Query: 413  GELSYFLGVSV 445
            G   YFLG+ +
Sbjct: 1102 GPPRYFLGIEI 1112



 Score = 39.3 bits (90), Expect(3) = 5e-80
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 129  LNETVYLKQPTRFVNADFPHHLCRLNKAFYG 221
            L E V++ QP+ FV+ + P+H+CRL KA YG
Sbjct: 996  LQEPVFMFQPSGFVDPNKPNHVCRLTKALYG 1026


>gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana]
          Length = 1309

 Score =  246 bits (627), Expect(3) = 5e-80
 Identities = 123/276 (44%), Positives = 178/276 (64%)
 Frame = +1

Query: 427  FLGGVCVAQLTGLFLHQTKYASDLLVRTGMTNCSSVSTPMVTRSQWSDDDNSPLFDDPSL 606
            FLG    +   GLFLHQ  YASD+L + GMT C+ + TP+    Q  +D NS  F++P+ 
Sbjct: 950  FLGIEIESYNNGLFLHQHAYASDILHQAGMTECNPMPTPL---PQHLEDLNSEPFEEPTY 1006

Query: 607  YRSIAGALQYLTFTRSNNQFVINQVCQYMHQPTQSHYVVVKRILRYIKGTLSVGLHIRCG 786
            +RS+AG LQYLT TR + Q+ +N +CQ MH PT S + ++KRILRY+KGT+++GL IR  
Sbjct: 1007 FRSLAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKH 1066

Query: 787  SLSSILIYSDADWASCPTTLRSTIDFYIFLGTNMVCWSSKKQATVSCSTAEAEYRAVAQL 966
                +  + D+D+A C  T RST  F I LG+ ++ WS+K+Q T+S S+ EAEYRA++  
Sbjct: 1067 HNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDT 1126

Query: 967  VAELEWLQSLLHELGVTVDSHPTVLCDNISTTYMASNPIKHARIKHIGIDIQFVRERVAK 1146
              E+ W+ SLL +LG++      V CDN+S  Y+++NP  H R KH   D  ++RERVA 
Sbjct: 1127 AREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVAL 1186

Query: 1147 GTLKVSYVPTVDQLTNLFTKSLSLVSFKTLCSNLGI 1254
            G ++  ++P   QL ++FTKSL    F TL + LG+
Sbjct: 1187 GLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGV 1222



 Score = 62.0 bits (149), Expect(3) = 5e-80
 Identities = 31/71 (43%), Positives = 43/71 (60%)
 Frame = +2

Query: 233  LMTCGFSNSRADSSMFILKSRSAMAILLLYVDDILLTPSSQVLLEHVIGKLKSEFDTIDL 412
            L+  GF  S +D S+F+        ILLLYVDDILLT S Q+L++ ++  L + F   DL
Sbjct: 885  LLDFGFECSTSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDL 944

Query: 413  GELSYFLGVSV 445
            G   YFLG+ +
Sbjct: 945  GPPRYFLGIEI 955



 Score = 39.3 bits (90), Expect(3) = 5e-80
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 129 LNETVYLKQPTRFVNADFPHHLCRLNKAFYG 221
           L E V++ QP+ FV+ + P+H+CRL KA YG
Sbjct: 839 LQEPVFMFQPSGFVDPNKPNHVCRLTKALYG 869


>emb|CAB40035.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7267767|emb|CAB81170.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1515

 Score =  245 bits (626), Expect(3) = 9e-77
 Identities = 126/281 (44%), Positives = 177/281 (62%)
 Frame = +1

Query: 412  G*IELFLGGVCVAQLTGLFLHQTKYASDLLVRTGMTNCSSVSTPMVTRSQWSDDDNSPLF 591
            G +  FLG        GLFL Q KY SDLLV  GM++CSS+ TP+  +      +N P F
Sbjct: 1144 GALHYFLGIQAHYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPL--QLDLLQGNNKP-F 1200

Query: 592  DDPSLYRSIAGALQYLTFTRSNNQFVINQVCQYMHQPTQSHYVVVKRILRYIKGTLSVGL 771
             +P+ +R +AG LQYLT TR + QF +N VCQ MH PT S + ++KRIL Y+KGT+++G+
Sbjct: 1201 PEPTYFRRLAGKLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGI 1260

Query: 772  HIRCGSLSSILIYSDADWASCPTTLRSTIDFYIFLGTNMVCWSSKKQATVSCSTAEAEYR 951
            ++   + S +  YSD+DWA C  T RST  F  FLG N++ WS+K+  TVS S+ EAEYR
Sbjct: 1261 NLSSNTDSVLRCYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYR 1320

Query: 952  AVAQLVAELEWLQSLLHELGVTVDSHPTVLCDNISTTYMASNPIKHARIKHIGIDIQFVR 1131
             ++   +E+ W+  LL E+G+     P + CDN+S  Y+++NP  H+R KH  +D  +VR
Sbjct: 1321 TLSFAASEVSWIGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVR 1380

Query: 1132 ERVAKGTLKVSYVPTVDQLTNLFTKSLSLVSFKTLCSNLGI 1254
            ERVA G L V ++P   QL ++FTKSL    F  L   LG+
Sbjct: 1381 ERVALGALTVKHIPASQQLADIFTKSLPQAPFCDLRFKLGV 1421



 Score = 58.5 bits (140), Expect(3) = 9e-77
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
 Frame = +2

Query: 233  LMTCGFSNSRADSSMFI-LKSRSAMAILLLYVDDILLTPSSQVLLEHVIGKLKSEFDTID 409
            L+  GF  S +D S+F+ LK R  M  LLLYVDD++LT ++ VLL+ ++  L +EF   D
Sbjct: 1084 LLKYGFICSFSDPSLFVYLKGRDVM-FLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKD 1142

Query: 410  LGELSYFLGV 439
            +G L YFLG+
Sbjct: 1143 MGALHYFLGI 1152



 Score = 32.3 bits (72), Expect(3) = 9e-77
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 129  LNETVYLKQPTRFVNADFPHHLCRLNKAFY 218
            L ETV++ QP  F +   P ++C+L KA Y
Sbjct: 1038 LKETVFMTQPPGFEDPSRPDYVCKLKKAIY 1067