BLASTX nr result
ID: Lithospermum22_contig00029164
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00029164
(1357 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 129 3e-55
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 129 3e-55
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 127 8e-55
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 117 1e-51
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 116 2e-51
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 129 bits (325), Expect(4) = 3e-55
Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 11/302 (3%)
Frame = +3
Query: 90 DHCPPNVTLQNRSMREPKPFRFFSFWIKHESYDELVSQA*-NVEVEGNGLGVLSSKLKNV 266
DH V L+ + +PF+FF+F +K+E + +V + V G+ + +S KLK +
Sbjct: 90 DHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAM 149
Query: 267 KTKLRDLNKQEFSNISYRAVEIQ------RDLEYVHAKVFNRDLSPNLLK*ISILEAKSR 428
K ++D ++ +S I R E ++L + V N L LEA+ +
Sbjct: 150 KKPIKDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAALE---------LEAQRK 200
Query: 429 FIIY--VEKCFYRDKARVTWLEEGDASTAFFNSRHKVQTTKNTILSIKDRQENLLADYQK 602
+++ E+ F+ ++RV+W EGD++T +F+ + + NTI S+ D L+ Q
Sbjct: 201 WVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQG 260
Query: 603 VNEEAMEFYKELFTAPRKDYVNYEEKLGENITKKIGANNVQALQAAITSVEIEKALMQMK 782
+ + + +Y+ L + + +E + +T + + L+ + T EI+ A +
Sbjct: 261 ILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLP 320
Query: 783 EGKTPRPNGFLVEFYKHSWSLVKGEVFEDVKTFFAGSQIPMSLNSTTLVLIPK--NDCLQ 956
KT P+G+ VEF++ +WS++ EV + FF Q+ N+TTLVLIPK N C
Sbjct: 321 RNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTI 380
Query: 957 NE 962
+E
Sbjct: 381 SE 382
Score = 112 bits (279), Expect(4) = 3e-55
Identities = 52/125 (41%), Positives = 79/125 (63%)
Frame = +1
Query: 958 MKEFMPISCCNTIYKYITSIIAARMKPFLDRIVEKQQTAFIPRRRISEGILLM*ELVSGY 1137
+ EF PISC NT+YK I+ ++ +R++ L ++ Q+AF+P R ++E +LL E+V GY
Sbjct: 380 ISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGY 439
Query: 1138 KLKSGVPRCAIKVDIMKVFDSVC*DFMWCILKVLGFPAFFINWIKACVSTDWFSVCFNGG 1317
+ PR +KVD+ K FDSV +F+ L+ L P +INWI C++T F++ NG
Sbjct: 440 NRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGA 499
Query: 1318 THGFF 1332
T GFF
Sbjct: 500 TGGFF 504
Score = 21.9 bits (45), Expect(4) = 3e-55
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 2 RRLDRLLCNEGWLDV 46
++LDR+L N+ W ++
Sbjct: 61 KKLDRILANDSWCNL 75
Score = 20.8 bits (42), Expect(4) = 3e-55
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 1328 FFSSTRGLRQ 1357
FF ST+GLRQ
Sbjct: 503 FFRSTKGLRQ 512
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 129 bits (325), Expect(4) = 3e-55
Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 11/302 (3%)
Frame = +3
Query: 90 DHCPPNVTLQNRSMREPKPFRFFSFWIKHESYDELVSQA*-NVEVEGNGLGVLSSKLKNV 266
DH V L+ + +PF+FF+F +K+E + +V + V G+ + +S KLK +
Sbjct: 90 DHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAM 149
Query: 267 KTKLRDLNKQEFSNISYRAVEIQ------RDLEYVHAKVFNRDLSPNLLK*ISILEAKSR 428
K ++D ++ +S I R E ++L + V N L LEA+ +
Sbjct: 150 KKPIKDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAALE---------LEAQRK 200
Query: 429 FIIY--VEKCFYRDKARVTWLEEGDASTAFFNSRHKVQTTKNTILSIKDRQENLLADYQK 602
+++ E+ F+ ++RV+W EGD++T +F+ + + NTI S+ D L+ Q
Sbjct: 201 WVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQG 260
Query: 603 VNEEAMEFYKELFTAPRKDYVNYEEKLGENITKKIGANNVQALQAAITSVEIEKALMQMK 782
+ + + +Y+ L + + +E + +T + + L+ + T EI+ A +
Sbjct: 261 ILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLP 320
Query: 783 EGKTPRPNGFLVEFYKHSWSLVKGEVFEDVKTFFAGSQIPMSLNSTTLVLIPK--NDCLQ 956
KT P+G+ VEF++ +WS++ EV + FF Q+ N+TTLVLIPK N C
Sbjct: 321 RNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTI 380
Query: 957 NE 962
+E
Sbjct: 381 SE 382
Score = 112 bits (279), Expect(4) = 3e-55
Identities = 52/125 (41%), Positives = 79/125 (63%)
Frame = +1
Query: 958 MKEFMPISCCNTIYKYITSIIAARMKPFLDRIVEKQQTAFIPRRRISEGILLM*ELVSGY 1137
+ EF PISC NT+YK I+ ++ +R++ L ++ Q+AF+P R ++E +LL E+V GY
Sbjct: 380 ISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGY 439
Query: 1138 KLKSGVPRCAIKVDIMKVFDSVC*DFMWCILKVLGFPAFFINWIKACVSTDWFSVCFNGG 1317
+ PR +KVD+ K FDSV +F+ L+ L P +INWI C++T F++ NG
Sbjct: 440 NRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGA 499
Query: 1318 THGFF 1332
T GFF
Sbjct: 500 TGGFF 504
Score = 21.9 bits (45), Expect(4) = 3e-55
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 2 RRLDRLLCNEGWLDV 46
++LDR+L N+ W ++
Sbjct: 61 KKLDRILANDSWCNL 75
Score = 20.8 bits (42), Expect(4) = 3e-55
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 1328 FFSSTRGLRQ 1357
FF ST+GLRQ
Sbjct: 503 FFRSTKGLRQ 512
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 127 bits (319), Expect(4) = 8e-55
Identities = 82/287 (28%), Positives = 142/287 (49%), Gaps = 3/287 (1%)
Frame = +3
Query: 90 DHCPPNVTLQNRSMREPKPFRFFSFWIKHESYDELVSQA*-NVEVEGNGLGVLSSKLKNV 266
DH V + RE +PFRF++F +++ + LV + ++ V G+ + +S KLK +
Sbjct: 179 DHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKAL 238
Query: 267 KTKLRDLNKQEFSNISYRAVEIQRDLEYVHAKVFNRDLSPNLLK*ISILEAKSRFIIYV- 443
K +R + + FSN+ R E + Y K + PN +EA+ +++I V
Sbjct: 239 KNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAAL---EMEAQRKWLILVK 295
Query: 444 -EKCFYRDKARVTWLEEGDASTAFFNSRHKVQTTKNTILSIKDRQENLLADYQKVNEEAM 620
E+ F+ ++RVTW+ EGD++T++F+ + NTI I D + + E +
Sbjct: 296 AEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCI 355
Query: 621 EFYKELFTAPRKDYVNYEEKLGENITKKIGANNVQALQAAITSVEIEKALMQMKEGKTPR 800
E++ L + +E + + + + L + + +I+ A KT
Sbjct: 356 EYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSG 415
Query: 801 PNGFLVEFYKHSWSLVKGEVFEDVKTFFAGSQIPMSLNSTTLVLIPK 941
P+GF VEF+K +WS++ EV + V FF S + N+TTLVLIPK
Sbjct: 416 PDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPK 462
Score = 111 bits (277), Expect(4) = 8e-55
Identities = 56/130 (43%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Frame = +1
Query: 955 RMKEFMPISCCN----TIYKYITSIIAARMKPFLDRIVEKQQTAFIPRRRISEGILLM*E 1122
+M +F PISC + T+YK I ++ R++ L +++ Q+AF+P R ++E +LL E
Sbjct: 468 KMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATE 527
Query: 1123 LVSGYKLKSGVPRCAIKVDIMKVFDSVC*DFMWCILKVLGFPAFFINWIKACVSTDWFSV 1302
LV GY ++ PR +KVD+ K FDS+ DF+ LK +G P F+ WI C+ST FSV
Sbjct: 528 LVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSV 587
Query: 1303 CFNGGTHGFF 1332
C NG T GFF
Sbjct: 588 CVNGNTGGFF 597
Score = 22.3 bits (46), Expect(4) = 8e-55
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 2 RRLDRLLCNEGW 37
++LDR+L NE W
Sbjct: 150 KKLDRILVNESW 161
Score = 22.3 bits (46), Expect(4) = 8e-55
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 1328 FFSSTRGLRQ 1357
FF STRGLRQ
Sbjct: 596 FFKSTRGLRQ 605
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 117 bits (294), Expect(4) = 1e-51
Identities = 74/287 (25%), Positives = 141/287 (49%), Gaps = 3/287 (1%)
Frame = +3
Query: 90 DHCPPNVTLQNRSMREPKPFRFFSFWIKHESYDELVSQA*-NVEVEGNGLGVLSSKLKNV 266
DH V L+ S++ +PF+FF++ +K+ + LV + V G+ + +S KLK +
Sbjct: 230 DHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKAL 289
Query: 267 KTKLRDLNKQEFSNISYRAVEIQRDLEYVHAKVFNRDLSPNLLK*ISILEAKSRFIIYV- 443
K ++D ++ +S + R E L + P + LEA+ ++ I
Sbjct: 290 KKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTL---ADPTPINASFELEAERKWHILTA 346
Query: 444 -EKCFYRDKARVTWLEEGDASTAFFNSRHKVQTTKNTILSIKDRQENLLADYQKVNEEAM 620
E+ F+R K+R++W EGD +T +F+ + + N+I ++ D L+ + + +
Sbjct: 347 AEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCA 406
Query: 621 EFYKELFTAPRKDYVNYEEKLGENITKKIGANNVQALQAAITSVEIEKALMQMKEGKTPR 800
++ L Y+ + + ++ + V L++ ++ +I AL + K+
Sbjct: 407 SYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCG 466
Query: 801 PNGFLVEFYKHSWSLVKGEVFEDVKTFFAGSQIPMSLNSTTLVLIPK 941
P+GF EF+ SWS+V EV + +K FF+ + N+TT+VLIPK
Sbjct: 467 PDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPK 513
Score = 113 bits (282), Expect(4) = 1e-51
Identities = 54/123 (43%), Positives = 76/123 (61%)
Frame = +1
Query: 964 EFMPISCCNTIYKYITSIIAARMKPFLDRIVEKQQTAFIPRRRISEGILLM*ELVSGYKL 1143
+F PISC NT+YK I ++ R++ L ++ Q+AF+P R ++E +LL +LV GY
Sbjct: 522 DFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNW 581
Query: 1144 KSGVPRCAIKVDIMKVFDSVC*DFMWCILKVLGFPAFFINWIKACVSTDWFSVCFNGGTH 1323
+ PR +KVD+ K FDSV +F+ L+ L P FINWI C+ST F+V NGG
Sbjct: 582 SNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNG 641
Query: 1324 GFF 1332
GFF
Sbjct: 642 GFF 644
Score = 21.2 bits (43), Expect(4) = 1e-51
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 1328 FFSSTRGLRQ 1357
FF ST+GLRQ
Sbjct: 643 FFKSTKGLRQ 652
Score = 20.4 bits (41), Expect(4) = 1e-51
Identities = 5/12 (41%), Positives = 10/12 (83%)
Frame = +2
Query: 2 RRLDRLLCNEGW 37
+++DR+L N+ W
Sbjct: 201 KKIDRILVNDSW 212
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 116 bits (291), Expect(2) = 2e-51
Identities = 55/126 (43%), Positives = 79/126 (62%)
Frame = +1
Query: 955 RMKEFMPISCCNTIYKYITSIIAARMKPFLDRIVEKQQTAFIPRRRISEGILLM*ELVSG 1134
+M +F PISC NT+YK I ++ +R+K L+ ++ Q+AF+P R +SE +LL E+V G
Sbjct: 520 KMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHG 579
Query: 1135 YKLKSGVPRCAIKVDIMKVFDSVC*DFMWCILKVLGFPAFFINWIKACVSTDWFSVCFNG 1314
Y K+ R +KVD+ K FDSV DF+ + L P F+ WI C+ST +FSV NG
Sbjct: 580 YNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNG 639
Query: 1315 GTHGFF 1332
+ GFF
Sbjct: 640 SSSGFF 645
Score = 114 bits (284), Expect(2) = 2e-51
Identities = 77/295 (26%), Positives = 148/295 (50%), Gaps = 11/295 (3%)
Frame = +3
Query: 90 DHCPPNVTLQNRSMREPKPFRFFSFWIKHESYDELVSQA*-NVEVEGNGLGVLSSKLKNV 266
DH V L ++ +PFRFF++++ + + +L+ + + V G+ + +S KLK++
Sbjct: 227 DHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHL 286
Query: 267 KTKLRDLNKQEFSNISYRAVEIQRDLEYVHAKVFNRD----LSPNLLK*ISILEA--KSR 428
K + +++ +S+I R E HA V +R +P+++ LEA K +
Sbjct: 287 KLPICCFSRENYSDIEKRVSE-------AHAIVLHRQRITLTNPSVVHATLELEATRKWQ 339
Query: 429 FIIYVEKCFYRDKARVTWLEEGDASTAFFNSRHKVQTTKNTILSIKD----RQENLLADY 596
+ E+ F+ K+ ++WL EGD +TA+F+ ++ + NTI + D R E
Sbjct: 340 ILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIK 399
Query: 597 QKVNEEAMEFYKELFTAPRKDYVNYEEKLGENITKKIGANNVQALQAAITSVEIEKALMQ 776
+ + E + F++ L + + + ++ + + + L+ + + ++I++A
Sbjct: 400 EGIKEHSCNFFESLLCGVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFS 459
Query: 777 MKEGKTPRPNGFLVEFYKHSWSLVKGEVFEDVKTFFAGSQIPMSLNSTTLVLIPK 941
+ K P+G+ EF+K W +V EV E V+ FF Q+ N+TTLVLIPK
Sbjct: 460 LPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPK 514