BLASTX nr result

ID: Lithospermum22_contig00029055 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00029055
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540851.1| PREDICTED: zinc finger CCCH domain-containin...    68   9e-10
ref|XP_003526333.1| PREDICTED: zinc finger CCCH domain-containin...    66   3e-09
ref|XP_004159224.1| PREDICTED: zinc finger CCCH domain-containin...    65   4e-09
ref|XP_004144584.1| PREDICTED: zinc finger CCCH domain-containin...    65   4e-09
ref|XP_002309834.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08

>ref|XP_003540851.1| PREDICTED: zinc finger CCCH domain-containing protein 13-like
           [Glycine max]
          Length = 417

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/53 (60%), Positives = 39/53 (73%)
 Frame = -3

Query: 163 MVGRKVFKTRLCELYQRGRCHRNNCSFAHGNTDIRRFDPLLRRPSFTGGRRDH 5
           MV RK FKT+LC LYQRGRC+R+NCSFAHG+ D+RRF       +   GRRD+
Sbjct: 1   MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSADLRRFS------ASYSGRRDY 47


>ref|XP_003526333.1| PREDICTED: zinc finger CCCH domain-containing protein 13-like
           [Glycine max]
          Length = 399

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = -3

Query: 163 MVGRKVFKTRLCELYQRGRCHRNNCSFAHGNTDIRRFDPLLRRPSFTGGRRDH 5
           MV RK FKT+LC LYQRGRC+R+NCSFAHG+ ++RRF       +   GRRD+
Sbjct: 1   MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSAELRRFS------ASYSGRRDY 47


>ref|XP_004159224.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
           [Cucumis sativus]
          Length = 188

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -3

Query: 163 MVGRKVFKTRLCELYQRGRCHRNNCSFAHGNTDIRRF-DPLLRRPSFTGGRRDHE 2
           MVGRK+FKT+LC LYQ+G C R +CSFAHGN ++RRF  P + R  + G    H+
Sbjct: 2   MVGRKLFKTKLCVLYQKGYCSRPSCSFAHGNAELRRFAAPSIGRTEYRGNDLRHK 56


>ref|XP_004144584.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
           [Cucumis sativus]
          Length = 188

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -3

Query: 163 MVGRKVFKTRLCELYQRGRCHRNNCSFAHGNTDIRRF-DPLLRRPSFTGGRRDHE 2
           MVGRK+FKT+LC LYQ+G C R +CSFAHGN ++RRF  P + R  + G    H+
Sbjct: 2   MVGRKLFKTKLCVLYQKGYCSRPSCSFAHGNAELRRFAAPSIGRTEYRGNDLRHK 56


>ref|XP_002309834.1| predicted protein [Populus trichocarpa] gi|222852737|gb|EEE90284.1|
           predicted protein [Populus trichocarpa]
          Length = 207

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = -3

Query: 163 MVGRKVFKTRLCELYQRGRCHRNNCSFAHGNTDIRRFDP 47
           M  RK+FKT+LC LY++GRCHR NCSFAHGN ++R+  P
Sbjct: 1   MAERKLFKTKLCVLYRKGRCHRQNCSFAHGNAELRQSMP 39


Top