BLASTX nr result

ID: Lithospermum22_contig00028444 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00028444
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI18267.3| unnamed protein product [Vitis vinifera]              102   4e-20
ref|XP_002269787.1| PREDICTED: probable ATP-dependent RNA helica...   102   4e-20
ref|XP_002316463.1| predicted protein [Populus trichocarpa] gi|2...   101   6e-20
ref|XP_003530375.1| PREDICTED: probable ATP-dependent RNA helica...   101   7e-20
ref|XP_003559590.1| PREDICTED: probable ATP-dependent RNA helica...   100   9e-20

>emb|CBI18267.3| unnamed protein product [Vitis vinifera]
          Length = 1162

 Score =  102 bits (253), Expect = 4e-20
 Identities = 50/54 (92%), Positives = 52/54 (96%)
 Frame = +1

Query: 247 PLLGDPNRVLLLTCHGSMATSEQKLIFEKAAPNIRKIVLSTNMAEASITINDVV 408
           PLLGDPNRVLLLTCHGSMATSEQKLIFEK  PN+RKIVL+TNMAEASITINDVV
Sbjct: 541 PLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEASITINDVV 594


>ref|XP_002269787.1| PREDICTED: probable ATP-dependent RNA helicase DHX36 [Vitis
           vinifera]
          Length = 1136

 Score =  102 bits (253), Expect = 4e-20
 Identities = 50/54 (92%), Positives = 52/54 (96%)
 Frame = +1

Query: 247 PLLGDPNRVLLLTCHGSMATSEQKLIFEKAAPNIRKIVLSTNMAEASITINDVV 408
           PLLGDPNRVLLLTCHGSMATSEQKLIFEK  PN+RKIVL+TNMAEASITINDVV
Sbjct: 541 PLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEASITINDVV 594


>ref|XP_002316463.1| predicted protein [Populus trichocarpa] gi|222865503|gb|EEF02634.1|
           predicted protein [Populus trichocarpa]
          Length = 1077

 Score =  101 bits (252), Expect = 6e-20
 Identities = 54/77 (70%), Positives = 60/77 (77%)
 Frame = +1

Query: 178 WCDTCSMGDPNRE*KAKTHTFFSPLLGDPNRVLLLTCHGSMATSEQKLIFEKAAPNIRKI 357
           W D  S+ D     + K H    PLLGDPNRVLL+TCHGSMATSEQKLIFEK  PN+RKI
Sbjct: 468 WEDISSLRD-----QLKAH----PLLGDPNRVLLVTCHGSMATSEQKLIFEKPPPNVRKI 518

Query: 358 VLSTNMAEASITINDVV 408
           VL+TNMAEASITIND+V
Sbjct: 519 VLATNMAEASITINDIV 535


>ref|XP_003530375.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
           max]
          Length = 1161

 Score =  101 bits (251), Expect = 7e-20
 Identities = 53/77 (68%), Positives = 60/77 (77%)
 Frame = +1

Query: 178 WCDTCSMGDPNRE*KAKTHTFFSPLLGDPNRVLLLTCHGSMATSEQKLIFEKAAPNIRKI 357
           W D  S+ D     + K H    PL+GDPNRVLLLTCHGSMATSEQKLIFEK  PNIRK+
Sbjct: 552 WEDISSLKD-----QLKAH----PLVGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKV 602

Query: 358 VLSTNMAEASITINDVV 408
           +L+TNMAEASITIND+V
Sbjct: 603 ILATNMAEASITINDIV 619


>ref|XP_003559590.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like
           [Brachypodium distachyon]
          Length = 1121

 Score =  100 bits (250), Expect = 9e-20
 Identities = 52/77 (67%), Positives = 61/77 (79%)
 Frame = +1

Query: 178 WCDTCSMGDPNRE*KAKTHTFFSPLLGDPNRVLLLTCHGSMATSEQKLIFEKAAPNIRKI 357
           W D  S+ D     + K H    PLLGDPNRVLLL+CHGSMAT+EQ+LIFEKA PN+RK+
Sbjct: 535 WDDISSLKD-----QLKAH----PLLGDPNRVLLLSCHGSMATAEQRLIFEKAPPNVRKV 585

Query: 358 VLSTNMAEASITINDVV 408
           VL+TNMAEASITIND+V
Sbjct: 586 VLATNMAEASITINDIV 602


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