BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00028405
         (1334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...   493   e-137
ref|XP_002867972.1| pentatricopeptide repeat-containing protein ...   446   e-123
ref|NP_193619.1| pentatricopeptide repeat-containing protein [Ar...   446   e-123
ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...   327   4e-87
ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containi...   325   2e-86

>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like
            [Vitis vinifera]
          Length = 536

 Score =  493 bits (1270), Expect = e-137
 Identities = 245/416 (58%), Positives = 314/416 (75%), Gaps = 6/416 (1%)
 Frame = +2

Query: 104  SNIFPPPSLLSL----TSMTQVHQTHAQMLKTGFFHHPYLSSRLLTAATTIS--PSLSYP 265
            S+ FPPP +LS     TS++++HQ HA +LK+G  H  + +SRL+ + +T S   ++ Y 
Sbjct: 2    SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYA 61

Query: 266  HSIFNNIHQPNSYIYNTIIRAYSTSPTPLQSFHIFIDMLFDAYVVPDKFTFTFILKACAS 445
            HSIF+ I  PNSY++NTIIRAY+ SPTP  +  IF  ML  A V+PDK+TFTF LK+C S
Sbjct: 62   HSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLH-ASVLPDKYTFTFALKSCGS 120

Query: 446  LCSIEYGQQIHGVLVKGGFYDDVYVYNTLVHVYAKGGSFCNARVLLDKMSEPDVIAWNAV 625
               +E G+QIHG ++K G  DD+++ NTL+H+YA  G   +AR LLD+M E DV++WNA+
Sbjct: 121  FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180

Query: 626  LSAYVEMGLMELAREFLNEMPVKNQESWNFMVSGYVNVGLVDEARSIFDEMLEKDVVSWN 805
            LSAY E GLMELA    +EM  +N ESWNFM+SGYV VGL++EAR +F E   K+VVSWN
Sbjct: 181  LSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWN 240

Query: 806  SLITGYAKVGDYCEVLRLFEDMQRGGNVVPDNCTLVNVLSACAGVGALGQGDWVQAYIDK 985
            ++ITGY+  G + EVL LFEDMQ  G V PDNCTLV+VLSACA VGAL QG+WV AYIDK
Sbjct: 241  AMITGYSHAGRFSEVLVLFEDMQHAG-VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDK 299

Query: 986  KGIEVNGFLATALVDMYSKCGCIEKAVEVFNRTSRKDVSTWNSMISGLSVHGYGESALET 1165
             GI ++GF+ATALVDMYSKCG IEKA+EVFN   RKD+STWNS+ISGLS HG G+ AL+ 
Sbjct: 300  NGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQI 359

Query: 1166 FNRMVADGYKPNDVTFVSVLAACSREWFLEEGREMFRNMEEKYGIEPSVEHYGCMV 1333
            F+ M+ +G+KPN+VTFV VL+ACSR   L+EGREMF  M   +GI+P++EHYGCMV
Sbjct: 360  FSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMV 415



 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 55/263 (20%), Positives = 117/263 (44%), Gaps = 4/263 (1%)
 Frame = +2

Query: 143 SMTQVHQTHAQMLKTGFFHHPYLSSRLLTAATTISPSLSYPHSIFNNIHQPNSYIYNTII 322
           +++Q    HA + K G     ++++ L+   +    S+     +FN+  + +   +N+II
Sbjct: 286 ALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCG-SIEKALEVFNSCLRKDISTWNSII 344

Query: 323 RAYSTSPTPLQSFHIFIDMLFDAYVVPDKFTFTFILKACASLCSIEYGQQIHGVLVKGGF 502
              ST  +   +  IF +ML + +  P++ TF  +L AC+    ++ G+++         
Sbjct: 345 SGLSTHGSGQHALQIFSEMLVEGFK-PNEVTFVCVLSACSRAGLLDEGREM--------- 394

Query: 503 YDDVYVYNTLVHVYAKGGSFCNARVLLDKMSEPDVIAWNAVLSAYVEMGLMELAREFLNE 682
                 +N +VHV+                 +P +  +  ++     +GL+E A E + +
Sbjct: 395 ------FNLMVHVHG---------------IQPTIEHYGCMVDLLGRVGLLEEAEELVQK 433

Query: 683 MPVKNQE-SWNFMVSGYVNVGLVDEARSIFDEMLE---KDVVSWNSLITGYAKVGDYCEV 850
           MP K     W  ++    N G V+ A  +  ++LE   ++  S+  L   YA +G + +V
Sbjct: 434 MPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDV 493

Query: 851 LRLFEDMQRGGNVVPDNCTLVNV 919
           + + + M+  G      C+++ V
Sbjct: 494 MEVRQKMRAQGVRKDPGCSMIEV 516


>ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297313808|gb|EFH44231.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 535

 Score =  446 bits (1147), Expect = e-123
 Identities = 221/411 (53%), Positives = 292/411 (71%), Gaps = 6/411 (1%)
 Frame = +2

Query: 119  PPSLLSLT----SMTQVHQTHAQMLKTGFFHHPYLSSRLLT-AATTISP-SLSYPHSIFN 280
            P  +LS T    S+ ++ Q HA MLKTG FH  + +S+L+  AAT   P ++SY HSI N
Sbjct: 9    PVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILN 68

Query: 281  NIHQPNSYIYNTIIRAYSTSPTPLQSFHIFIDMLFDAYVVPDKFTFTFILKACASLCSIE 460
             I  PN + +N++IRAY+ S TP  +  +F +ML    V PDK++FTF+LKACA+ C  E
Sbjct: 69   RIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGP-VFPDKYSFTFVLKACAAFCGFE 127

Query: 461  YGQQIHGVLVKGGFYDDVYVYNTLVHVYAKGGSFCNARVLLDKMSEPDVIAWNAVLSAYV 640
             G+QIHG+ +K     DV+V NTL++VY + G F  AR +LD+M   D ++WN++LSAY+
Sbjct: 128  EGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYL 187

Query: 641  EMGLMELAREFLNEMPVKNQESWNFMVSGYVNVGLVDEARSIFDEMLEKDVVSWNSLITG 820
            + GL+E AR   +EM  +N ESWNFM+SGY   GLV EAR +FD M  KDVVSWN+++T 
Sbjct: 188  DKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTA 247

Query: 821  YAKVGDYCEVLRLFEDMQRGGNVVPDNCTLVNVLSACAGVGALGQGDWVQAYIDKKGIEV 1000
            YA VG Y EVL +F  M       PD  TLVNVLSACA +G+L QG+WV  YIDK GIE+
Sbjct: 248  YAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEI 307

Query: 1001 NGFLATALVDMYSKCGCIEKAVEVFNRTSRKDVSTWNSMISGLSVHGYGESALETFNRMV 1180
             GF+ATALVDMYSKCG I+KA+EVF  TS++DVSTWNS+I+GLSVHG G+ ALE F+ MV
Sbjct: 308  EGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMV 367

Query: 1181 ADGYKPNDVTFVSVLAACSREWFLEEGREMFRNMEEKYGIEPSVEHYGCMV 1333
             +G+KPN +TF+ VL+AC+    L++ R++F  M   YGIEP++EHYGCMV
Sbjct: 368  YEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMV 418


>ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75098703|sp|O49399.2|PP321_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g18840 gi|5738365|emb|CAA16741.2| putative protein
            [Arabidopsis thaliana] gi|7268678|emb|CAB78886.1|
            putative protein [Arabidopsis thaliana]
            gi|332658697|gb|AEE84097.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  446 bits (1147), Expect = e-123
 Identities = 220/411 (53%), Positives = 292/411 (71%), Gaps = 6/411 (1%)
 Frame = +2

Query: 119  PPSLLSLT----SMTQVHQTHAQMLKTGFFHHPYLSSRLLT-AATTISP-SLSYPHSIFN 280
            P  +LS T    S+T++ Q HA MLKTG FH  + +S+L+  AAT   P ++SY HSI N
Sbjct: 39   PVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILN 98

Query: 281  NIHQPNSYIYNTIIRAYSTSPTPLQSFHIFIDMLFDAYVVPDKFTFTFILKACASLCSIE 460
             I  PN + +N++IRAY+ S TP  +  +F +ML    V PDK++FTF+LKACA+ C  E
Sbjct: 99   RIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGP-VFPDKYSFTFVLKACAAFCGFE 157

Query: 461  YGQQIHGVLVKGGFYDDVYVYNTLVHVYAKGGSFCNARVLLDKMSEPDVIAWNAVLSAYV 640
             G+QIHG+ +K G   DV+V NTLV+VY + G F  AR +LD+M   D ++WN++LSAY+
Sbjct: 158  EGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYL 217

Query: 641  EMGLMELAREFLNEMPVKNQESWNFMVSGYVNVGLVDEARSIFDEMLEKDVVSWNSLITG 820
            E GL++ AR   +EM  +N ESWNFM+SGY   GLV EA+ +FD M  +DVVSWN+++T 
Sbjct: 218  EKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTA 277

Query: 821  YAKVGDYCEVLRLFEDMQRGGNVVPDNCTLVNVLSACAGVGALGQGDWVQAYIDKKGIEV 1000
            YA VG Y EVL +F  M       PD  TLV+VLSACA +G+L QG+WV  YIDK GIE+
Sbjct: 278  YAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEI 337

Query: 1001 NGFLATALVDMYSKCGCIEKAVEVFNRTSRKDVSTWNSMISGLSVHGYGESALETFNRMV 1180
             GFLATALVDMYSKCG I+KA+EVF  TS++DVSTWNS+IS LSVHG G+ ALE F+ MV
Sbjct: 338  EGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMV 397

Query: 1181 ADGYKPNDVTFVSVLAACSREWFLEEGREMFRNMEEKYGIEPSVEHYGCMV 1333
             +G+KPN +TF+ VL+AC+    L++ R++F  M   Y +EP++EHYGCMV
Sbjct: 398  YEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMV 448


>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
            [Vitis vinifera]
          Length = 584

 Score =  327 bits (838), Expect = 4e-87
 Identities = 169/411 (41%), Positives = 254/411 (61%)
 Frame = +2

Query: 101  SSNIFPPPSLLSLTSMTQVHQTHAQMLKTGFFHHPYLSSRLLTAATTISPSLSYPHSIFN 280
            +SN     +L S  S   + + HAQ++ TG     +++++ + +    + ++ Y   +F 
Sbjct: 25   NSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFV 84

Query: 281  NIHQPNSYIYNTIIRAYSTSPTPLQSFHIFIDMLFDAYVVPDKFTFTFILKACASLCSIE 460
             I+ P+SY + T+IR +  +  P ++   F  ++    V  +KFTF F+LKA     S +
Sbjct: 85   GINYPDSYSWTTMIRGFVEAKNPEKALE-FYGLMRQRGVELNKFTFLFVLKAYGLRPSYQ 143

Query: 461  YGQQIHGVLVKGGFYDDVYVYNTLVHVYAKGGSFCNARVLLDKMSEPDVIAWNAVLSAYV 640
             G+ +HG LVK GF  DV+  N L+H+Y K GS  +A +L D+M   +V+ WN +++   
Sbjct: 144  EGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCF 203

Query: 641  EMGLMELAREFLNEMPVKNQESWNFMVSGYVNVGLVDEARSIFDEMLEKDVVSWNSLITG 820
              G  E AR    EMP +N  SWN +V GY  +G VD ARS+FD M E+DVVSW S+I+ 
Sbjct: 204  GCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISA 263

Query: 821  YAKVGDYCEVLRLFEDMQRGGNVVPDNCTLVNVLSACAGVGALGQGDWVQAYIDKKGIEV 1000
            Y + G   E L LF++M   G V  D+  + ++LSACA +GAL  G W+ AY+ +  +  
Sbjct: 264  YVQNGRAAEALELFKEMMLAG-VSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRN 322

Query: 1001 NGFLATALVDMYSKCGCIEKAVEVFNRTSRKDVSTWNSMISGLSVHGYGESALETFNRMV 1180
            + FL TALVDMY+KCGCI+ A  VFN   RK++ +WN+M+SGL++HG+G +ALE F +M 
Sbjct: 323  DVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQME 382

Query: 1181 ADGYKPNDVTFVSVLAACSREWFLEEGREMFRNMEEKYGIEPSVEHYGCMV 1333
            + G  PND+TFV+VL+ACS    +EEG + F  M++++ I P VEHYGCMV
Sbjct: 383  STGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMV 433


>ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like
            [Vitis vinifera]
          Length = 550

 Score =  325 bits (833), Expect = 2e-86
 Identities = 161/402 (40%), Positives = 255/402 (63%), Gaps = 2/402 (0%)
 Frame = +2

Query: 134  SLTSMTQVHQTHAQMLKTGFFHHPYLSSRLLTAAT-TISPSLSYPHSIFNNIHQPNSYIY 310
            S T++  + Q HA M+  GF  +      L+ A++  IS +++Y H +F +I +P+++++
Sbjct: 22   SCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMW 81

Query: 311  NTIIRAYSTSPTPLQSFHIFIDMLFDAYVVPDKFTFTFILKACASLCSIEYGQQIHGVLV 490
            NT+IR  + SP+PL +  ++  M  +  V PDKFTF F+LKAC  LC ++ G  +HG + 
Sbjct: 82   NTMIRGSAQSPSPLNAISLYSQME-NGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVF 140

Query: 491  KGGFYDDVYVYNTLVHVYAKGGSFCNARVLLDKMSEPDVIAWNAVLSAYVEMGLMELARE 670
            + GF  + +V NTL++ +A  G    AR L D  ++ DV+AW+A+ + Y   G + +AR+
Sbjct: 141  RLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQ 200

Query: 671  FLNEMPVKNQESWNFMVSGYVNVGLVDEARSIFDEMLEKDVVSWNSLITGYAKVGDYCEV 850
              +EMPVK+  SWN M++GY   G ++ AR +FDE+ ++DVV+WN++I GY   G   + 
Sbjct: 201  LFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQA 260

Query: 851  LRLFEDMQRGGNVVPDNCTLVNVLSACAGVGALGQGDWVQAYIDKKGI-EVNGFLATALV 1027
            L +FE+M+  G  +PD  T++++LSAC  +G L  G  +   I + G  +++  L  AL+
Sbjct: 261  LEMFEEMRSVGE-LPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALI 319

Query: 1028 DMYSKCGCIEKAVEVFNRTSRKDVSTWNSMISGLSVHGYGESALETFNRMVADGYKPNDV 1207
            DMY+KCG I +A+EVF     KDVSTWNS++ GL+ HG+ E ++  F  M     +P+++
Sbjct: 320  DMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEI 379

Query: 1208 TFVSVLAACSREWFLEEGREMFRNMEEKYGIEPSVEHYGCMV 1333
            TFV VL ACS    +EEGR+ F  M ++Y IEP++ HYGCMV
Sbjct: 380  TFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMV 421