BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00028378
         (836 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   118   1e-24
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   116   7e-24
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...   114   2e-23
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...   112   8e-23
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   112   8e-23

>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score =  118 bits (296), Expect = 1e-24
 Identities = 57/145 (39%), Positives = 88/145 (60%)
 Frame = -2

Query: 829 SELLKSKVSAGDFDFHPGCREIGVVNISFADDLFILSITNEKSLKTVKRILAMFGDCSGL 650
           S+LL        F +HP C+++G+ ++SFADDL +LS    +S++ +  +   F  CSGL
Sbjct: 57  SKLLDKATGQRRFGYHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGL 116

Query: 649 KPNLAKSTCYFAGIADEEEVRLSNIMGIPISTLLVRYLGTPLTTKQISGHDCRVLVDRVR 470
           + ++ KST YFAG++      +       + TL VRYLG PL TKQ+S  D   L++ ++
Sbjct: 117 RISMEKSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLIEHIK 176

Query: 469 NRIEGWGCKHLSYAGRVTLINSVLF 395
            +I  W  + LSYAGR+ LI+SVL+
Sbjct: 177 KKIGSWSARFLSYAGRLNLISSVLW 201


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  116 bits (290), Expect = 7e-24
 Identities = 58/145 (40%), Positives = 88/145 (60%)
 Frame = -2

Query: 829 SELLKSKVSAGDFDFHPGCREIGVVNISFADDLFILSITNEKSLKTVKRILAMFGDCSGL 650
           S++L   V A  F +HP CR IG+ ++SFADDL ILS    +S+  + ++L  F   SGL
Sbjct: 563 SKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGL 622

Query: 649 KPNLAKSTCYFAGIADEEEVRLSNIMGIPISTLLVRYLGTPLTTKQISGHDCRVLVDRVR 470
           K ++ KST Y AG+       +       +  L VRYLG PL +K+++  DC  L++++R
Sbjct: 623 KISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLR 682

Query: 469 NRIEGWGCKHLSYAGRVTLINSVLF 395
            +IE W  + LS+AGR+ LI+S L+
Sbjct: 683 KKIEAWTSRFLSFAGRLNLISSTLW 707


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  114 bits (286), Expect = 2e-23
 Identities = 56/145 (38%), Positives = 85/145 (58%)
 Frame = -2

Query: 829 SELLKSKVSAGDFDFHPGCREIGVVNISFADDLFILSITNEKSLKTVKRILAMFGDCSGL 650
           S+LL        F +HP C++IG+ ++SFADDL +LS    +S++ +  +   F  CS L
Sbjct: 5   SKLLDKAAGQRKFGYHPRCKQIGLTHLSFADDLMVLSDGKVRSIEGIVDVFDTFAKCSDL 64

Query: 649 KPNLAKSTCYFAGIADEEEVRLSNIMGIPISTLLVRYLGTPLTTKQISGHDCRVLVDRVR 470
           K ++ KST Y AG++      + +     + TL VRYLG PL TKQ S  D   L+D ++
Sbjct: 65  KISMEKSTVYLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPLIDHIK 124

Query: 469 NRIEGWGCKHLSYAGRVTLINSVLF 395
            +I  W  + LSY GR+ LI+S+L+
Sbjct: 125 QKICSWSARFLSYTGRLNLISSILW 149


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score =  112 bits (281), Expect = 8e-23
 Identities = 56/145 (38%), Positives = 90/145 (62%)
 Frame = -2

Query: 829  SELLKSKVSAGDFDFHPGCREIGVVNISFADDLFILSITNEKSLKTVKRILAMFGDCSGL 650
            S++L     A  F FHP C+ +G+ ++ FADDL IL+    +S+  +  ++ +F   SGL
Sbjct: 592  SKMLDQAAGAKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGL 651

Query: 649  KPNLAKSTCYFAGIADEEEVRLSNIMGIPISTLLVRYLGTPLTTKQISGHDCRVLVDRVR 470
            K N+ K+T Y AG++D     + +     ++ L VRYLG PL TK+++  D   L +++R
Sbjct: 652  KINMEKTTLYTAGVSDHNRHMMISRYPFGLAQLPVRYLGLPLVTKRLTKEDLSPLFEQIR 711

Query: 469  NRIEGWGCKHLSYAGRVTLINSVLF 395
            NRI  W  ++LS+AGR+ LI+SVL+
Sbjct: 712  NRIGTWTSRYLSFAGRLNLISSVLW 736


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  112 bits (281), Expect = 8e-23
 Identities = 58/145 (40%), Positives = 90/145 (62%)
 Frame = -2

Query: 829  SELLKSKVSAGDFDFHPGCREIGVVNISFADDLFILSITNEKSLKTVKRILAMFGDCSGL 650
            S++L    +A  F +HP C+ +G+ ++SFADDL +LS    +S++ + ++   F   SGL
Sbjct: 675  SKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGL 734

Query: 649  KPNLAKSTCYFAGIADEEEVRLSNIMGIPISTLLVRYLGTPLTTKQISGHDCRVLVDRVR 470
            + +L KST Y AG++      +++        L VRYLG PL TK++S  DC  L+++VR
Sbjct: 735  RISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVR 794

Query: 469  NRIEGWGCKHLSYAGRVTLINSVLF 395
             RI  W  + LSYAGR+ LI+SVL+
Sbjct: 795  KRIGSWTSRFLSYAGRLNLISSVLW 819