BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00028323
         (611 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   173   2e-41
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...   169   5e-40
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   169   5e-40
gb|ABA97563.1| retrotransposon protein, putative, unclassified [...   139   2e-38
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   162   6e-38

>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  173 bits (438), Expect = 2e-41
 Identities = 85/186 (45%), Positives = 122/186 (65%), Gaps = 1/186 (0%)
 Frame = -3

Query: 567 RPISLCNIIAKIISKVMANRLRLVLMKIISETQIAFLPGRIISNNILIAHEVMHYMNHNK 388
           RPI+LCNI  KI++K+M  R++L+L K+ISE Q AF+PGR+IS+N+LI HEV+H++  + 
Sbjct: 400 RPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSS 459

Query: 387 LGANPSMTIKLDMSKAYDRVEWSFLEAVMKKLGFYKVWVDWIMCIVSSVSYSFILNGAPK 208
              + SM +K DMSKAYDRVEW FL+ V+++ GF+ +W+DW++  V+SVSYSF++NG P+
Sbjct: 460 AKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQ 519

Query: 207 GFLRPSRGIR*GIHYSRICFSYVQRV-SPVC*XXXXXXXXXXGLKLAKVVRVLHILFADD 31
           G + P+RG+R G   S   F     V S +C                   RV H+LFADD
Sbjct: 520 GKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADD 579

Query: 30  IFVFCR 13
              F +
Sbjct: 580 TMFFSK 585


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score =  169 bits (427), Expect = 5e-40
 Identities = 91/190 (47%), Positives = 121/190 (63%), Gaps = 1/190 (0%)
 Frame = -3

Query: 579 MMQIRPISLCNIIAKIISKVMANRLRLVLMKIISETQIAFLPGRIISNNILIAHEVMHYM 400
           M + RPISLCN+  K+ISKV+++RL+ +L ++ISETQ AF+  R+I++NILIA E  H +
Sbjct: 82  MAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVAERLITDNILIAQENFHAL 141

Query: 399 NHNKLGANPSMTIKLDMSKAYDRVEWSFLEAVMKKLGFYKVWVDWIMCIVSSVSYSFILN 220
             N       M IK DMSKAYDRVEWSFL A+M K+GF + WVDWI+  +SSVSY  +LN
Sbjct: 142 RTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLN 201

Query: 219 GAPKGFLRPSRGIR*GIHYSRICFSYVQRVSPVC*XXXXXXXXXXGLKLAKV-VRVLHIL 43
           G+PKGF++PSRGIR G   S   F                     GL++++      H+L
Sbjct: 202 GSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLL 261

Query: 42  FADDIFVFCR 13
           FADD   FC+
Sbjct: 262 FADDSLFFCK 271


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score =  169 bits (427), Expect = 5e-40
 Identities = 91/190 (47%), Positives = 121/190 (63%), Gaps = 1/190 (0%)
 Frame = -3

Query: 579  MMQIRPISLCNIIAKIISKVMANRLRLVLMKIISETQIAFLPGRIISNNILIAHEVMHYM 400
            M + RPISLCN+  K+ISKV+++RL+ +L ++ISETQ AF+  R+I++NILIA E  H +
Sbjct: 448  MAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVAERLITDNILIAQENFHAL 507

Query: 399  NHNKLGANPSMTIKLDMSKAYDRVEWSFLEAVMKKLGFYKVWVDWIMCIVSSVSYSFILN 220
              N       M IK DMSKAYDRVEWSFL A+M K+GF + WVDWI+  +SSVSY  +LN
Sbjct: 508  RTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLN 567

Query: 219  GAPKGFLRPSRGIR*GIHYSRICFSYVQRVSPVC*XXXXXXXXXXGLKLAKV-VRVLHIL 43
            G+PKGF++PSRGIR G   S   F                     GL++++      H+L
Sbjct: 568  GSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLL 627

Query: 42   FADDIFVFCR 13
            FADD   FC+
Sbjct: 628  FADDSLFFCK 637


>gb|ABA97563.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 839

 Score =  139 bits (351), Expect(2) = 2e-38
 Identities = 65/131 (49%), Positives = 95/131 (72%)
 Frame = -3

Query: 570 IRPISLCNIIAKIISKVMANRLRLVLMKIISETQIAFLPGRIISNNILIAHEVMHYMNHN 391
           +RPIS+CN++ KI+SKV+ANRL+ +L ++IS++Q AF PGR+IS+NIL+A+E+ HYM   
Sbjct: 382 LRPISVCNVLYKIVSKVLANRLKKILPEVISQSQSAFFPGRLISDNILVAYELTHYMRQK 441

Query: 390 KLGANPSMTIKLDMSKAYDRVEWSFLEAVMKKLGFYKVWVDWIMCIVSSVSYSFILNGAP 211
           + G      +KLDMSKAYDRVEW FL+ +M KLGF + W   IM  ++ V+Y   +NG  
Sbjct: 442 RNGETGYAALKLDMSKAYDRVEWGFLKDMMLKLGFNQEWTQLIMKCITFVTYRIRVNGEL 501

Query: 210 KGFLRPSRGIR 178
              ++P RG++
Sbjct: 502 IEVIQPERGLQ 512



 Score = 45.1 bits (105), Expect(2) = 2e-38
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = -2

Query: 172 DPLFPYLFLLCAEGLTCMLRRAEEQKALIRIKVS 71
           DPL PYLFLLCAEG + ++R+AEE+ +L  ++ S
Sbjct: 515 DPLSPYLFLLCAEGFSALIRKAEEEGSLQGVRCS 548


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  162 bits (409), Expect = 6e-38
 Identities = 85/190 (44%), Positives = 119/190 (62%), Gaps = 1/190 (0%)
 Frame = -3

Query: 579 MMQIRPISLCNIIAKIISKVMANRLRLVLMKIISETQIAFLPGRIISNNILIAHEVMHYM 400
           M ++RPISLCN+  K+ISK++  RL+ VL  +ISETQ AF+ GR+IS+NILIA E+ H +
Sbjct: 285 MTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGL 344

Query: 399 NHNKLGANPSMTIKLDMSKAYDRVEWSFLEAVMKKLGFYKVWVDWIMCIVSSVSYSFILN 220
             N    +  M IK DMSKAYD+VEW+F+EA+++K+GF + W+ WIM  +++V Y  ++N
Sbjct: 345 RTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLIN 404

Query: 219 GAPKGFLRPSRGIR*GIHYSRICFSYVQRVSPVC*XXXXXXXXXXGLKLA-KVVRVLHIL 43
           G PKG + P RG+R G   S   F     V               G+K+A     V H+L
Sbjct: 405 GQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLL 464

Query: 42  FADDIFVFCR 13
           FADD   FC+
Sbjct: 465 FADDSLFFCK 474