BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00028228
         (1361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containi...   424   e-116
emb|CBI26347.3| unnamed protein product [Vitis vinifera]              424   e-116
ref|XP_002517032.1| pentatricopeptide repeat-containing protein,...   417   e-114
ref|NP_188942.1| pentatricopeptide repeat-containing protein [Ar...   385   e-104
ref|XP_002885540.1| pentatricopeptide repeat-containing protein ...   378   e-102

>ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
            [Vitis vinifera]
          Length = 881

 Score =  424 bits (1090), Expect = e-116
 Identities = 203/311 (65%), Positives = 257/311 (82%)
 Frame = -3

Query: 1356 FDEACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCA 1177
            +++AC L DSME HGVLPD+ +YNSLIQ+LA ADLPHKAK Y+ KMQ+  LV DC+PYCA
Sbjct: 549  YEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCA 608

Query: 1176 VISGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAG 997
            VIS F+KL +L+ A  LFKEMIG  ++PDVVVYG+LINAFAD G+ + A  Y+ A+  AG
Sbjct: 609  VISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAG 668

Query: 996  LPVNDVIHNSLLKLYTKVGYLKEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAE 817
            LP+N VI+NSL+KLYTKVGYL+EAQ  Y++LQ+S+ GPDVYSSNCMIDLYSERSMV +AE
Sbjct: 669  LPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAE 728

Query: 816  EIFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYA 637
            EIF +LK  G ANEF++AMMLCMYKR G  +EA ++ ++MRE GL+TD+LSYN VL  YA
Sbjct: 729  EIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYA 788

Query: 636  KDGRFRDAAATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGLQ 457
             DGRF+DA  TFKEM+ +AI+PDD TF+SLGVVL+KCG+P++AV KLE+TR K+ ++GLQ
Sbjct: 789  MDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLEMTRKKDPQSGLQ 848

Query: 456  AWTNTLRSVID 424
            AW + L SV++
Sbjct: 849  AWASILFSVVE 859



 Score =  104 bits (259), Expect = 6e-20
 Identities = 81/325 (24%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
 Frame = -3

Query: 1350 EACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAVI 1171
            EA   F  M R G++P+  T+N++I +        +A   ++KM++     D   Y  +I
Sbjct: 343  EASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILI 402

Query: 1170 SGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLP 991
            S   K   +D+A   FK+M    ++PD+V Y  L+ AF+       A   +  M + GL 
Sbjct: 403  SLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLE 462

Query: 990  VNDVIHNSLLKLYTKVGYLKEAQVTYRILQ-SSKAGPDVYSSNCMIDLYSERSMVIRAEE 814
            +++   ++L ++Y + G LK++ + +R          + YS+N  ID Y ER  ++ AE+
Sbjct: 463  IDEFTQSALTRMYIEAGMLKKSWLWFRRFHLEGNMSSECYSAN--IDAYGERGHILEAEK 520

Query: 813  IFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYA- 637
             F   K + K +   + +M+  Y  +  + +A +L   M   G+L D  SYN+++ + A 
Sbjct: 521  AFLCCKESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILAS 580

Query: 636  ----------------------------------KDGRFRDAAATFKEMLVSAIRPDDST 559
                                              K G+   A   FKEM+   ++PD   
Sbjct: 581  ADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVV 640

Query: 558  FRSLGVVLMKCGVPREAVKKLELTR 484
            +  L       G  REAV  +   R
Sbjct: 641  YGILINAFADVGNVREAVNYVNALR 665



 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 25/219 (11%)
 Frame = -3

Query: 1128 LFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDVIHNSLLKLYT 949
            L+ EM+  GI P    YG LI+ ++  G  + A  +L  M K G+  ++V    +++ Y 
Sbjct: 218  LWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYK 277

Query: 948  KVGYLKEAQVTYRILQSSKAGPDV------------------------YSSNCMIDLYSE 841
            K G  K+A+  ++     K   D                         Y+ N +ID Y +
Sbjct: 278  KAGEFKKAEQFFKNWSLGKTLKDEGKTSEPTATSAVESASQPHVCLSSYTYNTLIDTYGK 337

Query: 840  RSMVIRAEEIFTNLKGAGKA-NEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLS 664
               +  A + F  +   G   N   +  M+ +   +G   EA  L ++M E     D  +
Sbjct: 338  AGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRT 397

Query: 663  YNTVLNLYAKDGRFRDAAATFKEMLVSAIRPDDSTFRSL 547
            YN +++L+AK      AA+ FK+M  + + PD  ++R+L
Sbjct: 398  YNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTL 436



 Score = 61.6 bits (148), Expect = 5e-07
 Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = -3

Query: 1149 KLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDVIHN 970
            + +KA  L   M   G+ PD   Y  LI   A       A  YL  M +  L  + + + 
Sbjct: 548  RYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYC 607

Query: 969  SLLKLYTKVGYLKEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAEEIFTNLKGA 790
            +++  + K+G L+ A+  ++ +      PDV     +I+ +++   V  A      L+ A
Sbjct: 608  AVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNA 667

Query: 789  G-KANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDA 613
            G   N   Y  ++ +Y + G   EA    K ++   +  DV S N +++LY++    + A
Sbjct: 668  GLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQA 727

Query: 612  AATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGLQAWTNTL 439
               F E L      ++ +F  +  +  + G  +EA + ++  R       L ++ N L
Sbjct: 728  EEIF-ESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVL 784


>emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  424 bits (1090), Expect = e-116
 Identities = 203/311 (65%), Positives = 257/311 (82%)
 Frame = -3

Query: 1356 FDEACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCA 1177
            +++AC L DSME HGVLPD+ +YNSLIQ+LA ADLPHKAK Y+ KMQ+  LV DC+PYCA
Sbjct: 530  YEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCA 589

Query: 1176 VISGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAG 997
            VIS F+KL +L+ A  LFKEMIG  ++PDVVVYG+LINAFAD G+ + A  Y+ A+  AG
Sbjct: 590  VISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAG 649

Query: 996  LPVNDVIHNSLLKLYTKVGYLKEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAE 817
            LP+N VI+NSL+KLYTKVGYL+EAQ  Y++LQ+S+ GPDVYSSNCMIDLYSERSMV +AE
Sbjct: 650  LPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAE 709

Query: 816  EIFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYA 637
            EIF +LK  G ANEF++AMMLCMYKR G  +EA ++ ++MRE GL+TD+LSYN VL  YA
Sbjct: 710  EIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYA 769

Query: 636  KDGRFRDAAATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGLQ 457
             DGRF+DA  TFKEM+ +AI+PDD TF+SLGVVL+KCG+P++AV KLE+TR K+ ++GLQ
Sbjct: 770  MDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLEMTRKKDPQSGLQ 829

Query: 456  AWTNTLRSVID 424
            AW + L SV++
Sbjct: 830  AWASILFSVVE 840



 Score =  104 bits (259), Expect = 6e-20
 Identities = 81/325 (24%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
 Frame = -3

Query: 1350 EACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAVI 1171
            EA   F  M R G++P+  T+N++I +        +A   ++KM++     D   Y  +I
Sbjct: 324  EASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILI 383

Query: 1170 SGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLP 991
            S   K   +D+A   FK+M    ++PD+V Y  L+ AF+       A   +  M + GL 
Sbjct: 384  SLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLE 443

Query: 990  VNDVIHNSLLKLYTKVGYLKEAQVTYRILQ-SSKAGPDVYSSNCMIDLYSERSMVIRAEE 814
            +++   ++L ++Y + G LK++ + +R          + YS+N  ID Y ER  ++ AE+
Sbjct: 444  IDEFTQSALTRMYIEAGMLKKSWLWFRRFHLEGNMSSECYSAN--IDAYGERGHILEAEK 501

Query: 813  IFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYA- 637
             F   K + K +   + +M+  Y  +  + +A +L   M   G+L D  SYN+++ + A 
Sbjct: 502  AFLCCKESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILAS 561

Query: 636  ----------------------------------KDGRFRDAAATFKEMLVSAIRPDDST 559
                                              K G+   A   FKEM+   ++PD   
Sbjct: 562  ADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVV 621

Query: 558  FRSLGVVLMKCGVPREAVKKLELTR 484
            +  L       G  REAV  +   R
Sbjct: 622  YGILINAFADVGNVREAVNYVNALR 646



 Score = 83.6 bits (205), Expect = 1e-13
 Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
 Frame = -3

Query: 1128 LFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDVIHNSLLKLYT 949
            L+ EM+  GI P    YG LI+ ++  G  + A  +L  M K G+  ++V    +++ Y 
Sbjct: 218  LWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYK 277

Query: 948  KVGYLKEAQVTYRILQSSKAG-PDV----YSSNCMIDLYSERSMVIRAEEIFTNLKGAGK 784
            K G  K+A+  ++      A  P V    Y+ N +ID Y +   +  A + F  +   G 
Sbjct: 278  KAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGI 337

Query: 783  A-NEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDAAA 607
              N   +  M+ +   +G   EA  L ++M E     D  +YN +++L+AK      AA+
Sbjct: 338  IPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAAS 397

Query: 606  TFKEMLVSAIRPDDSTFRSL 547
             FK+M  + + PD  ++R+L
Sbjct: 398  YFKKMKEARLEPDLVSYRTL 417



 Score = 61.6 bits (148), Expect = 5e-07
 Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = -3

Query: 1149 KLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDVIHN 970
            + +KA  L   M   G+ PD   Y  LI   A       A  YL  M +  L  + + + 
Sbjct: 529  RYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYC 588

Query: 969  SLLKLYTKVGYLKEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAEEIFTNLKGA 790
            +++  + K+G L+ A+  ++ +      PDV     +I+ +++   V  A      L+ A
Sbjct: 589  AVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNA 648

Query: 789  G-KANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDA 613
            G   N   Y  ++ +Y + G   EA    K ++   +  DV S N +++LY++    + A
Sbjct: 649  GLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQA 708

Query: 612  AATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGLQAWTNTL 439
               F E L      ++ +F  +  +  + G  +EA + ++  R       L ++ N L
Sbjct: 709  EEIF-ESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVL 765


>ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543667|gb|EEF45195.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 875

 Score =  417 bits (1072), Expect = e-114
 Identities = 201/312 (64%), Positives = 252/312 (80%)
 Frame = -3

Query: 1359 NFDEACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYC 1180
            N+++AC LFDSME HGV+PD+C+Y+SL+Q+LA ADLP KAK Y++KMQ+AGLV DCV YC
Sbjct: 553  NYEKACDLFDSMESHGVVPDKCSYSSLVQILASADLPDKAKHYLKKMQEAGLVSDCVQYC 612

Query: 1179 AVISGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKA 1000
            AVIS FVKL KL+ A  ++KEM+G  +KPD++VYGVLINAFAD+G  K A  Y+ AM  A
Sbjct: 613  AVISSFVKLGKLEMAEEVYKEMVGFDVKPDIIVYGVLINAFADSGCVKEAISYIDAMKGA 672

Query: 999  GLPVNDVIHNSLLKLYTKVGYLKEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRA 820
            GLP N VI+NSL+KLYTKVGYL+EAQ TY++LQSS  GP+ YSSNCMIDLYSE+SMV  A
Sbjct: 673  GLPGNTVIYNSLIKLYTKVGYLREAQETYKLLQSSDVGPETYSSNCMIDLYSEQSMVKPA 732

Query: 819  EEIFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLY 640
            EEIF ++K  G ANEF YAMMLCMYKR G F +A+++AKQMRE GLLT +LSYN VL LY
Sbjct: 733  EEIFESMKRKGDANEFTYAMMLCMYKRLGWFEQAIQIAKQMRELGLLTYLLSYNNVLGLY 792

Query: 639  AKDGRFRDAAATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGL 460
            A DGRF++A  TFKEM+ + I+PDD TF+SLG+VL+KCG+ ++AV KLE T  K+  +GL
Sbjct: 793  ALDGRFKEAVGTFKEMVGAGIQPDDCTFKSLGIVLVKCGISKQAVGKLEATTKKDRHSGL 852

Query: 459  QAWTNTLRSVID 424
            Q W   L +V++
Sbjct: 853  QTWLAALSAVVE 864



 Score = 84.3 bits (207), Expect = 6e-14
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 36/344 (10%)
 Frame = -3

Query: 1350 EACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAVI 1171
            EA  +F  M R  +LP   T+N++I +        +    ++KM++     D   Y  +I
Sbjct: 348  EASDIFAEMLRKRILPTTVTFNTMIHICGNQGQLEEVALLMQKMEELRCPPDTRTYNILI 407

Query: 1170 SGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLP 991
                K   ++ A   FK M    ++PD+V Y  L+ AF+       A   +  M + G+ 
Sbjct: 408  FIHAKHNDINMAASYFKRMKKDQLQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIE 467

Query: 990  VNDVIHNSLLKLYTKVGYLKEAQVTY-RILQSSKAGPDVYSSNCMIDLYSERSMVIRAEE 814
            +++   ++L ++Y + G L+++ + + R   +     + YS+N  ID Y ER  V  A  
Sbjct: 468  IDEYTQSALTRMYIEAGMLEKSWLWFWRFHLAGNMSSECYSAN--IDAYGERGHVKEAAR 525

Query: 813  IFT-----------------NLKGAGKANEFA------------------YAMMLCMYKR 739
            +F                     G GK  E A                  Y+ ++ +   
Sbjct: 526  VFACRLEQNKLTVLEFNVMIKAYGFGKNYEKACDLFDSMESHGVVPDKCSYSSLVQILAS 585

Query: 738  NGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDAAATFKEMLVSAIRPDDST 559
              +  +A    K+M+E GL++D + Y  V++ + K G+   A   +KEM+   ++PD   
Sbjct: 586  ADLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGFDVKPDIIV 645

Query: 558  FRSLGVVLMKCGVPREAVKKLELTRTKEFEAGLQAWTNTLRSVI 427
            +  L       G  +EA+  ++  +     AGL   T    S+I
Sbjct: 646  YGVLINAFADSGCVKEAISYIDAMK----GAGLPGNTVIYNSLI 685



 Score = 61.6 bits (148), Expect = 5e-07
 Identities = 42/195 (21%), Positives = 85/195 (43%)
 Frame = -3

Query: 1131 CLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDVIHNSLLKLY 952
            CL  EM    I P    YG LI+ ++  G  + A ++L  M K G+  ++V    ++++Y
Sbjct: 225  CLCNEMSFKRISPINSTYGTLIDVYSKGGLREKALDWLEKMNKQGMEPDEVTMGIVVQMY 284

Query: 951  TKVGYLKEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAEEIFTNLKGAGKANEF 772
             K G  ++A+  ++     +A     +    + + +ER M +               +  
Sbjct: 285  KKAGEFQKAEEFFKKWSLREALRHKVTGKASVRVENERQMDV-------------SLSSH 331

Query: 771  AYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDAAATFKEM 592
             Y  M+  Y + G  +EA  +  +M    +L   +++NT++++    G+  + A   ++M
Sbjct: 332  TYNTMIDTYGKAGQIKEASDIFAEMLRKRILPTTVTFNTMIHICGNQGQLEEVALLMQKM 391

Query: 591  LVSAIRPDDSTFRSL 547
                  PD  T+  L
Sbjct: 392  EELRCPPDTRTYNIL 406


>ref|NP_188942.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75273922|sp|Q9LS88.1|PP250_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g23020 gi|9294191|dbj|BAB02093.1| unnamed protein
            product [Arabidopsis thaliana]
            gi|332643185|gb|AEE76706.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 842

 Score =  385 bits (988), Expect = e-104
 Identities = 189/315 (60%), Positives = 247/315 (78%), Gaps = 3/315 (0%)
 Frame = -3

Query: 1353 DEACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAV 1174
            ++AC LF+SM  +GV PD+CTYN+L+Q+LA AD+PHK + Y+ KM++ G V DC+PYCAV
Sbjct: 522  EKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAV 581

Query: 1173 ISGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGL 994
            IS FVKL +L+ A  ++KEM+   I+PDVVVYGVLINAFADTG+ + A  Y+ AM +AG+
Sbjct: 582  ISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGI 641

Query: 993  PVNDVIHNSLLKLYTKVGYLKEAQVTYR-ILQSSKAG--PDVYSSNCMIDLYSERSMVIR 823
            P N VI+NSL+KLYTKVGYL EA+  YR +LQS      PDVY+SNCMI+LYSERSMV +
Sbjct: 642  PGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRK 701

Query: 822  AEEIFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNL 643
            AE IF ++K  G+ANEF +AMMLCMYK+NG F EA ++AKQMRE  +LTD LSYN+VL L
Sbjct: 702  AEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGL 761

Query: 642  YAKDGRFRDAAATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAG 463
            +A DGRF++A  TFKEM+ S I+PDDSTF+SLG +LMK G+ ++AV+K+E  R KE + G
Sbjct: 762  FALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIKRG 821

Query: 462  LQAWTNTLRSVIDKG 418
            L+ W +TL S++  G
Sbjct: 822  LELWISTLSSLVGIG 836



 Score = 80.5 bits (197), Expect = 9e-13
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 1/239 (0%)
 Frame = -3

Query: 1350 EACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAVI 1171
            EA   F  M   G++P   T+N++I +        +    ++ M+      D   Y  +I
Sbjct: 316  EASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTYNILI 374

Query: 1170 SGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLP 991
            S   K   +++A   FKEM   G+KPD V Y  L+ AF+     + A   +  M    + 
Sbjct: 375  SLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVE 434

Query: 990  VNDVIHNSLLKLYTKVGYLKEAQVTY-RILQSSKAGPDVYSSNCMIDLYSERSMVIRAEE 814
            +++   ++L ++Y +   L+++   + R   +     + YS+N  ID Y ER  +  AE 
Sbjct: 435  IDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSAN--IDAYGERGYLSEAER 492

Query: 813  IFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYA 637
            +F   +   K     Y +M+  Y  +    +A  L + M  +G+  D  +YNT++ + A
Sbjct: 493  VFICCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILA 551



 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 66/300 (22%), Positives = 121/300 (40%)
 Frame = -3

Query: 1293 TYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAVISGFVKLCKLDKAVCLFKEM 1114
            TYN++I     +    +A    ++M + G+V   V +  +I  +    +L +   L K M
Sbjct: 300  TYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTM 359

Query: 1113 IGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDVIHNSLLKLYTKVGYL 934
              L   PD   Y +LI+        + A  Y   M   GL  + V + +LL  ++    +
Sbjct: 360  -KLHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMV 418

Query: 933  KEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAEEIFTNLKGAGKANEFAYAMML 754
            +EA+     +       D Y+ + +  +Y E  M+ ++   F     AG  +   Y+  +
Sbjct: 419  EEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSANI 478

Query: 753  CMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDAAATFKEMLVSAIR 574
              Y   G   EA R+    +E    T V+ YN ++  Y        A   F+ M+   + 
Sbjct: 479  DAYGERGYLSEAERVFICCQEVNKRT-VIEYNVMIKAYGISKSCEKACELFESMMSYGVT 537

Query: 573  PDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGLQAWTNTLRSVIDKG*HNTVEKL 394
            PD  T+ +L  +L    +P +    LE  R   + +    +   + S +  G  N  E++
Sbjct: 538  PDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEV 597



 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 41/245 (16%)
 Frame = -3

Query: 1158 KLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDV 979
            K CK      L+ EMI  GIKP    YG LI+ ++  G   HA  +LG M+K G+  ++V
Sbjct: 199  KACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEV 258

Query: 978  I-----------------------------------------HNSLLKLYTKVGYLKEAQ 922
                                                      +N+++  Y K G +KEA 
Sbjct: 259  TTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEAS 318

Query: 921  VTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAEEIFTNLKGAGKANEFAYAMMLCMYK 742
             T++ +      P   + N MI +Y     +     +   +K     +   Y +++ ++ 
Sbjct: 319  ETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLHCAPDTRTYNILISLHT 378

Query: 741  RNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDAAATFKEMLVSAIRPDDS 562
            +N     A    K+M++ GL  D +SY T+L  ++      +A     EM    +  D+ 
Sbjct: 379  KNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEY 438

Query: 561  TFRSL 547
            T  +L
Sbjct: 439  TQSAL 443


>ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331380|gb|EFH61799.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 841

 Score =  378 bits (971), Expect = e-102
 Identities = 186/312 (59%), Positives = 243/312 (77%), Gaps = 3/312 (0%)
 Frame = -3

Query: 1353 DEACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAV 1174
            ++AC LF+SM  +GV PD+CTYN+L+Q+LA AD+P KAK Y+ KM++ G V DC+PYCAV
Sbjct: 521  EKACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAV 580

Query: 1173 ISGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGL 994
            IS FVKL +L+ A  ++KEM+   I+PDVVVYGVLINAFADTG+ + A  Y+ AM +AG+
Sbjct: 581  ISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGI 640

Query: 993  PVNDVIHNSLLKLYTKVGYLKEAQVTYRILQSS---KAGPDVYSSNCMIDLYSERSMVIR 823
            P N VI+NSL+KLYTKVGYL EA+  YR L  S      PDVY+SNCMI+LYS+RSMV +
Sbjct: 641  PENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYPDVYTSNCMINLYSQRSMVRK 700

Query: 822  AEEIFTNLKGAGKANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNL 643
            AE IF ++K   +ANEF +AMMLCMYK+NG F EA ++AKQMRE  +LTD LSYN+VL L
Sbjct: 701  AEAIFESMKQRREANEFTFAMMLCMYKKNGRFEEATQIAKQMREMRILTDPLSYNSVLGL 760

Query: 642  YAKDGRFRDAAATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAG 463
            YA DGRF++A  TFKEM+ S I+PDDSTF+SLG +L+K G+ ++AV+K+E  R KE + G
Sbjct: 761  YALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILIKLGMSKKAVRKIEEIRKKEIKRG 820

Query: 462  LQAWTNTLRSVI 427
            L+ W +TL S++
Sbjct: 821  LELWISTLSSLV 832



 Score = 97.1 bits (240), Expect = 1e-17
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 7/211 (3%)
 Frame = -3

Query: 1158 KLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDV 979
            K CK      L+ EMI  GIKP    YG LI+ ++  G   HA  +LG M+K G+  ++V
Sbjct: 198  KACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEV 257

Query: 978  IHNSLLKLYTKVGYLKEAQVTYR--ILQSSKAGPDV----YSSNCMIDLYSERSMVIRAE 817
                +L++Y K    ++A+  ++      +KA   V    Y+ N MID Y +   +  A 
Sbjct: 258  TTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEAS 317

Query: 816  EIFTNLKGAG-KANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLY 640
            E F  +   G       +  M+ +Y  NG F E   L K M+ F    D  +YN +++L+
Sbjct: 318  ETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTMK-FHCAPDTRTYNILISLH 376

Query: 639  AKDGRFRDAAATFKEMLVSAIRPDDSTFRSL 547
             K+     A   FKEM  + ++PD  ++R+L
Sbjct: 377  TKNNDIERAGTYFKEMKGAGLKPDPVSYRTL 407



 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 68/300 (22%), Positives = 122/300 (40%)
 Frame = -3

Query: 1293 TYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCAVISGFVKLCKLDKAVCLFKEM 1114
            TYN++I     +    +A    ++M + G+V   V +  +I  +    +  +   L K M
Sbjct: 299  TYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTM 358

Query: 1113 IGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAGLPVNDVIHNSLLKLYTKVGYL 934
                  PD   Y +LI+        + A  Y   M  AGL  + V + +LL  ++    +
Sbjct: 359  -KFHCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRHMV 417

Query: 933  KEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAEEIFTNLKGAGKANEFAYAMML 754
            KEA+     +  +    D Y+ + +  +Y E  M+ ++   F     AG  +   Y+  +
Sbjct: 418  KEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSWSWFKRFHVAGNMSSEGYSANI 477

Query: 753  CMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLYAKDGRFRDAAATFKEMLVSAIR 574
              Y   G   EA R+    +E    T VL YN ++  Y        A   F+ M+   + 
Sbjct: 478  DAYGERGYLSEAERVFICCQEVNKRT-VLEYNVMIKAYGISKSCEKACELFESMMSYGVT 536

Query: 573  PDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGLQAWTNTLRSVIDKG*HNTVEKL 394
            PD  T+ +L  +L    +P +A   LE  R   + +    +   + S +  G  N  E++
Sbjct: 537  PDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEV 596



 Score = 68.9 bits (167), Expect = 3e-09
 Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 1/336 (0%)
 Frame = -3

Query: 1356 FDEACYLFDSMERHGVLPDRCTYNSLIQMLAGADLPHKAKPYVRKMQQAGLVDDCVPYCA 1177
            F E   L  +M+ H   PD  TYN LI +    +   +A  Y ++M+ AGL  D V Y  
Sbjct: 348  FGEVTSLMKTMKFH-CAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRT 406

Query: 1176 VISGFVKLCKLDKAVCLFKEMIGLGIKPDVVVYGVLINAFADTGSAKHATEYLGAMTKAG 997
            ++  F     + +A  L  EM    ++ D      L   + +    + +  +      AG
Sbjct: 407  LLYAFSIRHMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSWSWFKRFHVAG 466

Query: 996  LPVNDVIHNSLLKLYTKVGYLKEAQVTYRILQSSKAGPDVYSSNCMIDLYSERSMVIRAE 817
              ++   +++ +  Y + GYL EA+  +   Q       V   N MI  Y       +A 
Sbjct: 467  -NMSSEGYSANIDAYGERGYLSEAERVFICCQEVNK-RTVLEYNVMIKAYGISKSCEKAC 524

Query: 816  EIFTNLKGAG-KANEFAYAMMLCMYKRNGMFREAVRLAKQMREFGLLTDVLSYNTVLNLY 640
            E+F ++   G   ++  Y  ++ +     M  +A    ++MRE G ++D + Y  V++ +
Sbjct: 525  ELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVISSF 584

Query: 639  AKDGRFRDAAATFKEMLVSAIRPDDSTFRSLGVVLMKCGVPREAVKKLELTRTKEFEAGL 460
             K G+   A   +KEM+   I PD   +  L       G  ++A+  +E  +    EAG+
Sbjct: 585  VKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMK----EAGI 640

Query: 459  QAWTNTLRSVIDKG*HNTVEKLA*PVWFGQRLKALY 352
                    SVI    +N++ KL   V +    +A+Y
Sbjct: 641  PE-----NSVI----YNSLIKLYTKVGYLDEAEAIY 667