BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00027544
         (628 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...    84   2e-17
gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold ...    75   2e-17
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    84   6e-17
gb|EEC83784.1| hypothetical protein OsI_29682 [Oryza sativa Indi...    81   1e-16
ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    91   2e-16

>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 84.0 bits (206), Expect(2) = 2e-17
 Identities = 41/128 (32%), Positives = 64/128 (50%)
 Frame = -3

Query: 386 STAGLWKNLWSLNIPPRVRSFLWQCLHNILPTKDNLLKRRMHVDNTCILCGEADETIFHL 207
           S   ++ N+W  N PP+++ F W+  HN LPT  NL +RR+  D+TC  CGEA E + HL
Sbjct: 493 SAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHL 552

Query: 206 LLSCQFSRRFWFSTPWKFDTLGGPWTTLKDWWNYITTQLTERDCEDVIAQLACLLWSLWK 27
           L  C+ S+  W     K    G    +     N  + Q   +     ++    + W +WK
Sbjct: 553 LFQCRVSKEIWEQAHIKL-CPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPFIGWRIWK 611

Query: 26  LRNAKVFS 3
           +RN  +F+
Sbjct: 612 MRNDLIFN 619



 Score = 30.8 bits (68), Expect(2) = 2e-17
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 627 SHLMKEGHWDFQEVTRIVGAVDASLVLAIPLSQNQIMDRLVWNHTKSGCYLTCSGY 460
           S L+ EG W+   + +++   D   + AI  S     D + W +T  G Y   SGY
Sbjct: 417 SDLLIEGRWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGY 472


>gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 355

 Score = 75.5 bits (184), Expect(2) = 2e-17
 Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
 Frame = -3

Query: 371 WKNLWSLNIPPRVRSFLWQCLHNILPTKDNLLKRRMHVDNTCILCGEADETIFHLLLSCQ 192
           W N+W+LNIP RVR+FLW+  HN LPT+ NL  R +  + +C++     E   HL   C 
Sbjct: 115 WMNIWNLNIPHRVRAFLWRLAHNCLPTRVNLNARGIQCEESCVMFENFAECHTHLFFVCA 174

Query: 191 FSRRFWFSTPWKFDTLGGPWTTLKDWWNYITTQLTE---RDCEDVIAQLACLLWSLWKLR 21
            +        WK   L    + L    N  TT L +   R C         LLWSLWK R
Sbjct: 175 KA-----MDCWKNIGLHVVLSELLPLANNFTTLLFDFMHRLCSQQQQAAGMLLWSLWKSR 229

Query: 20  NAKVF 6
           N K++
Sbjct: 230 NIKLW 234



 Score = 38.9 bits (89), Expect(2) = 2e-17
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 603 WDFQEVTRIVGAVDASLVLAIPLSQNQIMDRLVWNHTKSGCYLTCSGYK 457
           W+ Q VT I    DA+ +L+IPL    + D  +W  T +G Y   S Y+
Sbjct: 49  WNQQIVTSIFNPQDAAAILSIPLHNRLLSDTRIWKTTTTGNYTVKSAYR 97


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 84.3 bits (207), Expect(2) = 6e-17
 Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
 Frame = -3

Query: 374  LWKNLWSLNIPPRVRSFLWQCLHNILPTKDNLLKRRMHVDNTCILCGEADETIFHLLLSC 195
            +++ +W L++PP++  FLW+C++N L    NL  R +  + +C+ C    ET+ HLL  C
Sbjct: 1050 IFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKC 1109

Query: 194  QFSRRFWFSTPWKFDTLGGPW--TTLKDWWNYITTQLTERDCEDVIAQLACLLWSLWKLR 21
             F+R  W  +P      GG W  +  ++  + ++   ++ +  D  A +  +LW LWK R
Sbjct: 1110 PFARLTWAISPLPAPP-GGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNR 1168

Query: 20   NAKVF 6
            N  VF
Sbjct: 1169 NDLVF 1173



 Score = 28.5 bits (62), Expect(2) = 6e-17
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 621  LMKEGH-WDFQEVTRIVGAVDASLVLAIPLSQNQIMDRLVWNHTKSGCYLTCSGY 460
            L+ +G  W++  V+ +        +LA+     +  DR  W +++SG Y   SGY
Sbjct: 972  LLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGY 1026


>gb|EEC83784.1| hypothetical protein OsI_29682 [Oryza sativa Indica Group]
          Length = 666

 Score = 80.9 bits (198), Expect(2) = 1e-16
 Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
 Frame = -3

Query: 458 RRACEMKRNGDLGGRARGNGSIARSTAGLWKNLWSLNIPPRVRSFLWQCLHNILPTKDNL 279
           R A E K N      +  +GS    +  LW  +WS  +PP+VR F W+   + L T+ N 
Sbjct: 372 RLAIENKLNSK---NSNASGSSIEGSKSLWNTIWSCPVPPKVRIFAWRVASDCLATRVNK 428

Query: 278 LKRRMHVDNTCILCGEADETIFHLLLSCQFSRRFW--FSTPWKFDTLGGPWTTLKDWWNY 105
             RR+   +TC LCG   ET FH L  C ++R  W      W+       WT     W  
Sbjct: 429 KGRRLEALDTCTLCGTESETAFHALCRCTYARALWAALREVWQIPD-QTTWTYQGTKWLL 487

Query: 104 IT-TQLTERDCEDVIAQLACLLWSLWKLRNAKV 9
           +T  +L+E +   ++     LLW +W +RN  V
Sbjct: 488 LTLVKLSEMERMFIL----MLLWRIWHVRNEVV 516



 Score = 30.8 bits (68), Expect(2) = 1e-16
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 606 HWDFQEVTRIVGAVDASLVLAIPLSQNQIMDRLVWNHTKSGCYLTCSGYK 457
           +W+ Q V +I   +DA  +L+I  S+    D L W+  KSG +   + Y+
Sbjct: 323 NWNEQLVRQIFLPMDADAILSIRTSRQGEDDFLAWHLEKSGIFTVKTAYR 372


>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
 Frame = -3

Query: 374 LWKNLWSLNIPPRVRSFLWQCLHNILPTKDNLLKRRMHVDNTCILCGEADETIFHLLLSC 195
           LWK +W L +P RVR+F+W+   NI+PT+ NL +R + +D  C LC +ADE+  H  ++C
Sbjct: 259 LWKLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMAC 318

Query: 194 QFSRRFWFSTPWKFDTLGGPWTTLKDWWNYITTQLTERDCEDVIAQLACL-LWSLWKLRN 18
             + + WF++P  F     P T L  W   + + L+ +  E +  QL C+ LW +W  RN
Sbjct: 319 PMTLQVWFASPLGFQP--PPQTDLNAW---LLSWLSAK--EPLAVQLFCVCLWKIWFFRN 371

Query: 17  AKVFS 3
             +F+
Sbjct: 372 QVIFN 376