BLASTX nr result
ID: Lithospermum22_contig00027313
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00027313
(1457 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002533677.1| Replication factor C subunit, putative [Rici... 94 7e-56
ref|XP_002320575.1| predicted protein [Populus trichocarpa] gi|2... 89 3e-55
ref|XP_003604069.1| Replication factor C subunit [Medicago trunc... 81 6e-41
emb|CBI38070.3| unnamed protein product [Vitis vinifera] 81 5e-39
ref|XP_003574379.1| PREDICTED: probable replication factor C sub... 79 1e-38
>ref|XP_002533677.1| Replication factor C subunit, putative [Ricinus communis]
gi|223526428|gb|EEF28707.1| Replication factor C
subunit, putative [Ricinus communis]
Length = 661
Score = 93.6 bits (231), Expect(5) = 7e-56
Identities = 40/64 (62%), Positives = 52/64 (81%)
Frame = +1
Query: 604 TCAVIILYGADKLSSDAMVYIKWLLERYKGQNKIFFCCSDASKLEAVKPICKVVQLLRPS 783
+C IILY AD+LS+DA++YIKWLLERY+G +K FFCCSD SKL+A+K +C +VQL PS
Sbjct: 425 SCRAIILYNADRLSADAVLYIKWLLERYQGSSKFFFCCSDVSKLQAIKELCNLVQLFMPS 484
Query: 784 IKEV 795
E+
Sbjct: 485 NDEI 488
Score = 63.2 bits (152), Expect(5) = 7e-56
Identities = 30/59 (50%), Positives = 45/59 (76%), Gaps = 4/59 (6%)
Frame = +2
Query: 359 LQGESVGSIFAKVKISKNHVEVNLSELRGYEKDVIVQLINE----KVNNGLPESYDNCR 523
L+GES+GSI ++K+S H+EVNLS+++GYEK ++V+LI E K N LP+ +D+CR
Sbjct: 370 LRGESIGSIEVRIKVSSQHIEVNLSDMKGYEKHIVVELIKETDDKKSRNYLPK-HDSCR 427
Score = 58.9 bits (141), Expect(5) = 7e-56
Identities = 30/44 (68%), Positives = 34/44 (77%)
Frame = +3
Query: 867 QIVGVLQFIAAEEGINLPHQLAVTIANNSKNNLRQAIRSFEATW 998
+IV VL+FIA +EGI LP Q A IA SKNNLRQAIRS EA+W
Sbjct: 487 EIVKVLKFIAKQEGIELPFQFAERIALESKNNLRQAIRSLEASW 530
Score = 48.9 bits (115), Expect(5) = 7e-56
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +2
Query: 1100 EDQEILTGWEDVISNVAANIIDEQSPRQ 1183
EDQEILTGWED I+N+A N+I EQSP+Q
Sbjct: 538 EDQEILTGWEDDIANIAKNMIQEQSPKQ 565
Score = 42.7 bits (99), Expect(5) = 7e-56
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +3
Query: 1287 RLFIIRGKLQNLIEHNVSPEFIF 1355
+L+IIRGKLQ LIEH+VSPEFIF
Sbjct: 565 QLYIIRGKLQKLIEHDVSPEFIF 587
>ref|XP_002320575.1| predicted protein [Populus trichocarpa] gi|222861348|gb|EEE98890.1|
predicted protein [Populus trichocarpa]
Length = 725
Score = 89.0 bits (219), Expect(5) = 3e-55
Identities = 39/63 (61%), Positives = 51/63 (80%)
Frame = +1
Query: 607 CAVIILYGADKLSSDAMVYIKWLLERYKGQNKIFFCCSDASKLEAVKPICKVVQLLRPSI 786
C IILY AD LS+DA++YIKW+LERYKG +K FFCC+D S+L+ ++ +C VVQLL PS
Sbjct: 452 CRAIILYEADMLSTDALLYIKWVLERYKGFSKFFFCCNDVSRLQPIRSLCTVVQLLPPSK 511
Query: 787 KEV 795
+EV
Sbjct: 512 REV 514
Score = 63.9 bits (154), Expect(5) = 3e-55
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +3
Query: 867 QIVGVLQFIAAEEGINLPHQLAVTIANNSKNNLRQAIRSFEATWH 1001
++V VL+FIA +E I LP+ LA IA+ SKNNLRQAIRSFEA+WH
Sbjct: 513 EVVQVLEFIAEQEAIELPYPLAEKIADKSKNNLRQAIRSFEASWH 557
Score = 62.4 bits (150), Expect(5) = 3e-55
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +2
Query: 356 SLQGESVGSIFAKVKISKNHVEVNLSELRGYEKDVIVQLINEKVNN 493
+L+GE +GSI +VK+S HVEVNLS+L+GYEK VIV+LI E NN
Sbjct: 387 NLKGEQIGSIQVRVKVSSQHVEVNLSDLKGYEKQVIVELIKETHNN 432
Score = 47.4 bits (111), Expect(5) = 3e-55
Identities = 19/28 (67%), Positives = 26/28 (92%)
Frame = +2
Query: 1100 EDQEILTGWEDVISNVAANIIDEQSPRQ 1183
EDQEILTGWED I+N+A ++++EQSP+Q
Sbjct: 564 EDQEILTGWEDDIANIAKDMVEEQSPKQ 591
Score = 42.4 bits (98), Expect(5) = 3e-55
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +3
Query: 1287 RLFIIRGKLQNLIEHNVSPEFIF 1355
+L+IIRGKLQNLIEH+VSP+F F
Sbjct: 591 QLYIIRGKLQNLIEHDVSPDFFF 613
>ref|XP_003604069.1| Replication factor C subunit [Medicago truncatula]
gi|355493117|gb|AES74320.1| Replication factor C subunit
[Medicago truncatula]
Length = 800
Score = 81.3 bits (199), Expect(4) = 6e-41
Identities = 34/67 (50%), Positives = 51/67 (76%)
Frame = +1
Query: 595 SMKTCAVIILYGADKLSSDAMVYIKWLLERYKGQNKIFFCCSDASKLEAVKPICKVVQLL 774
S + C IILY A+KLS ++++YIKWL+E+YKG NK+FFCCSD S+L+ ++ C V+L
Sbjct: 548 SPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESRLQPIQSYCTTVRLS 607
Query: 775 RPSIKEV 795
PS +++
Sbjct: 608 SPSTQQI 614
Score = 55.5 bits (132), Expect(4) = 6e-41
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 4/60 (6%)
Frame = +2
Query: 356 SLQGESVGSIFAKVKISKNHVEVNLSELRGYEKDVIVQLINEK----VNNGLPESYDNCR 523
+L+GE V ++ +V+ S +HVEVNLSE +GYEK+VIV+L E +N+ LP S +NC+
Sbjct: 494 NLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETYGKVINSSLPCSPENCQ 553
Score = 53.9 bits (128), Expect(4) = 6e-41
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = +3
Query: 846 LKSQPFLQIVGVLQFIAAEEGINLPHQLAVTIANNSKNNLRQAIRSFEATWHFK 1007
L S QIV +L++I EEGI L H+ +I SKNNLRQAIRS EAT+ K
Sbjct: 606 LSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEATYRNK 659
Score = 45.8 bits (107), Expect(4) = 6e-41
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +2
Query: 1088 SSLKEDQEILTGWEDVISNVAANIIDEQSPRQ*VFIERFLR 1210
++L +D +LTGWED I N+A NII EQSPRQ I + L+
Sbjct: 660 NALNDDDLVLTGWEDDILNIARNIITEQSPRQLYAIRKKLQ 700
>emb|CBI38070.3| unnamed protein product [Vitis vinifera]
Length = 530
Score = 81.3 bits (199), Expect(4) = 5e-39
Identities = 37/75 (49%), Positives = 55/75 (73%), Gaps = 6/75 (8%)
Frame = +1
Query: 589 ITSMKTCAV------IILYGADKLSSDAMVYIKWLLERYKGQNKIFFCCSDASKLEAVKP 750
I S + CA+ I+LY A+KLS++A++Y KWLL++Y+G N +FF CSD SKL+ +K
Sbjct: 324 IESQQGCALLNIFTAIVLYEAEKLSTEALLYFKWLLDKYEGHNMVFFSCSDTSKLQPIKS 383
Query: 751 ICKVVQLLRPSIKEV 795
+C +VQLL PS +E+
Sbjct: 384 LCTMVQLLPPSDEEI 398
Score = 67.4 bits (163), Expect(4) = 5e-39
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = +3
Query: 867 QIVGVLQFIAAEEGINLPHQLAVTIANNSKNNLRQAIRSFEATWHFK 1007
+IV VL+ IA +E INLP +LA I NSKNNLRQAIRSFEATW FK
Sbjct: 397 EIVEVLELIAKQESINLPRELAEKIVGNSKNNLRQAIRSFEATWKFK 443
Score = 45.4 bits (106), Expect(4) = 5e-39
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +2
Query: 1097 KEDQEILTGWEDVISNVAANIIDEQSPRQ 1183
+EDQEI TGWED I+ +A NII+EQ+P+Q
Sbjct: 447 EEDQEIRTGWEDDIARIAKNIIEEQTPKQ 475
Score = 35.8 bits (81), Expect(4) = 5e-39
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 1287 RLFIIRGKLQNLIEHNVSPEFIFTV 1361
+L+ IRGKLQ L EHNV+ EFI+ V
Sbjct: 475 QLYNIRGKLQKLTEHNVASEFIYKV 499
>ref|XP_003574379.1| PREDICTED: probable replication factor C subunit 3-like
[Brachypodium distachyon]
Length = 565
Score = 79.3 bits (194), Expect(4) = 1e-38
Identities = 37/70 (52%), Positives = 48/70 (68%)
Frame = +1
Query: 586 SITSMKTCAVIILYGADKLSSDAMVYIKWLLERYKGQNKIFFCCSDASKLEAVKPICKVV 765
SI C VI+++ AD++SSD YI W L RY G +KI FCCS++S LEAVK +CKV+
Sbjct: 303 SICDHTNCRVIVVHDADRISSDLQHYIGWFLGRYVGCSKIIFCCSNSSNLEAVKHLCKVI 362
Query: 766 QLLRPSIKEV 795
LL PS E+
Sbjct: 363 TLLPPSFDEI 372
Score = 58.9 bits (141), Expect(4) = 1e-38
Identities = 28/46 (60%), Positives = 36/46 (78%)
Frame = +3
Query: 861 FLQIVGVLQFIAAEEGINLPHQLAVTIANNSKNNLRQAIRSFEATW 998
F +I+ VL+FIA +EGI LP ++A IA ++ NLRQAIRSFEATW
Sbjct: 369 FDEIIKVLEFIATKEGIYLPREIASRIATSASTNLRQAIRSFEATW 414
Score = 50.8 bits (120), Expect(4) = 1e-38
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +2
Query: 353 VSLQGESVGSIFAKVKISKNHVEVNLSELRGYEKDVIVQLINEKVNNGLPES---YDNCR 523
+ L+GE I K+K S +HVEVNL++L GYEK VI L+NE + P+S + NCR
Sbjct: 254 IELKGEIAKHIDIKIKSSDHHVEVNLADLHGYEKQVITTLLNESIPP--PDSICDHTNCR 311
Score = 39.3 bits (90), Expect(4) = 1e-38
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 1100 EDQEILTGWEDVISNVAANIIDEQSPRQ*VFIERFLR 1210
EDQ ILTGWE+ I +VA I++E SP+Q I +R
Sbjct: 422 EDQPILTGWEEEIFDVAKKIMEEPSPKQLYLIRGKIR 458