BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00027283
         (876 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515948.1| pentatricopeptide repeat-containing protein,...   481   e-134
ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containi...   480   e-133
ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containi...   474   e-132
ref|XP_003594555.1| Pentatricopeptide repeat-containing protein ...   474   e-131
ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containi...   466   e-129

>ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544853|gb|EEF46368.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 706

 Score =  481 bits (1239), Expect = e-134
 Identities = 227/291 (78%), Positives = 267/291 (91%)
 Frame = -3

Query: 874  EGKLGRLDEIVKISSEYMNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLS 695
            EG+L +LD++V++S +YMN+ IYAYLVRTL KLGHA+EAHRLFCNMWS+HDRGDRDA LS
Sbjct: 195  EGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLS 254

Query: 694  MLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDG 515
            MLESLCN+ KTVEAIDLL  +HEKGI TDT MYN VF++LG+ KQ++H++DLYE+MK DG
Sbjct: 255  MLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDG 314

Query: 514  PPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAH 335
            P PDI+TYNILISSFGRAG+V + +KIFEEL++SDC+PDI+SYNSLINCLGK G++DEAH
Sbjct: 315  PLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAH 374

Query: 334  MRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 155
            +RFREMQEKG NPDV+TYSTLIECFGK++KVEMACRLFDEMLAEGC PNIVTYNILLDCL
Sbjct: 375  IRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCL 434

Query: 154  EKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRVRRKNPIT 2
            E+SGRTAEAVDLY+ LK QGLTPD ITY++LERLQSGS++  RVRRKNPIT
Sbjct: 435  ERSGRTAEAVDLYAKLKQQGLTPDSITYSVLERLQSGSHRKLRVRRKNPIT 485



 Score =  104 bits (259), Expect = 3e-20
 Identities = 54/171 (31%), Positives = 91/171 (53%)
 Frame = -3

Query: 541 LYERMKKDGPPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLG 362
           +Y  MK+ G   DI+ +N+L+ +  +  +VD   K+FE++    C PD  +Y  +I   G
Sbjct: 64  VYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTG 123

Query: 361 KYGNVDEAHMRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIV 182
           + G +DE+   F EM  KG +P++I Y+T+I+    S  V+    LF +M+ + C PN  
Sbjct: 124 RIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEF 183

Query: 181 TYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVG 29
           TY+++L  L   G+      L+   K+  L+  Y+  +I   L    NK+G
Sbjct: 184 TYSVILTLLAAEGQ------LHKLDKVVELSRKYMNRSIYAYLVRTLNKLG 228



 Score =  102 bits (255), Expect = 9e-20
 Identities = 73/318 (22%), Positives = 128/318 (40%), Gaps = 67/318 (21%)
 Frame = -3

Query: 823 MNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLSMLESLCNSRKTVEAIDL 644
           MN   Y  LV+   +   ++   R++  M       D  A+  +L++L   +K  +A  +
Sbjct: 40  MNGYTYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKV 99

Query: 643 LSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDGPPPDIYTYNILISSFGR 464
             +M +K  E D Y Y ++    G+  +L     L+E M   G  P++  YN +I +   
Sbjct: 100 FEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALAN 159

Query: 463 AGRVDDTVKIFEELDSSDCRPDIVSYN--------------------------------S 380
           +  VD T+ +F ++   +CRP+  +Y+                                 
Sbjct: 160 SRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRSIYAY 219

Query: 379 LINCLGKYGNVDEAHMRFREM-----------------------------------QEKG 305
           L+  L K G+  EAH  F  M                                    EKG
Sbjct: 220 LVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKG 279

Query: 304 FNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCLEKSGRTAEAV 125
            N D I Y+T+    G+ +++     L+++M  +G  P+I TYNIL+    ++G+  EA+
Sbjct: 280 INTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAI 339

Query: 124 DLYSSLKLQGLTPDYITY 71
            ++  L+     PD I+Y
Sbjct: 340 KIFEELENSDCKPDIISY 357



 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%)
 Frame = -3

Query: 634 MHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYER--MKKDGPPPDIYTYNILISSFGRA 461
           M + G+       N++    G  + L     L E+  +K +G     YTY  L+ ++ R+
Sbjct: 1   MDKNGVRGTISTVNILIGFFGDGEDLERCIGLIEKWDLKMNG-----YTYKCLVQAYLRS 55

Query: 460 GRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAHMRFREMQEKGFNPDVITY 281
              D+  +++ E+       DI ++N L++ L K   VD+A   F +M++K   PD  TY
Sbjct: 56  CDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTY 115

Query: 280 STLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCLEKSGRTAEAVDLYSSLKL 101
           + +I   G+  K++ +  LF+EML +GCSPN++ YN ++  L  S    + + L+S +  
Sbjct: 116 TIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMME 175

Query: 100 QGLTPDYITYAILERLQSGSNKVGRV 23
           +   P+  TY+++  L +   ++ ++
Sbjct: 176 KNCRPNEFTYSVILTLLAAEGQLHKL 201


>ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
            [Vitis vinifera]
          Length = 990

 Score =  480 bits (1235), Expect = e-133
 Identities = 225/291 (77%), Positives = 267/291 (91%)
 Frame = -3

Query: 874  EGKLGRLDEIVKISSEYMNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLS 695
            EG+LGRLDE+V++S+++MNK IYAYLVRTL KLGHA+EAHRLFCNMWSFHD GDRDAY+S
Sbjct: 195  EGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMS 254

Query: 694  MLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDG 515
            MLESLC++ KT EA+DLLS +HEK I TDT MYN V S+LGK K+ + +HDLYE+MK+DG
Sbjct: 255  MLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDG 314

Query: 514  PPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAH 335
            P PDI++YNILISSFGRAGRV++ VKIFEEL++S C+PDI+S+NSLINCLGK G++DEAH
Sbjct: 315  PSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAH 374

Query: 334  MRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 155
            MRF+EM+E+G +PDV+TYSTLIECFGK++KVEMACRLFDEMLAEGCSPNIVTYNILLDCL
Sbjct: 375  MRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 434

Query: 154  EKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRVRRKNPIT 2
            E+SGRTAEAVDLY+ LK QGLTPD ITYA+LERLQSGS++  RVRRKNPIT
Sbjct: 435  ERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGSHQKVRVRRKNPIT 485



 Score =  100 bits (249), Expect = 4e-19
 Identities = 44/160 (27%), Positives = 85/160 (53%)
 Frame = -3

Query: 619 IETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDGPPPDIYTYNILISSFGRAGRVDDTV 440
           ++ + Y Y  +  +  +        ++Y  +++ G   DI+ YN+L+ +  +  +VD   
Sbjct: 38  LQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVY 97

Query: 439 KIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAHMRFREMQEKGFNPDVITYSTLIECF 260
            +F+++    C PD  +Y  +I   GK G  DE+   F+EM EKG+ P++I Y+T+I+  
Sbjct: 98  MVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQAL 157

Query: 259 GKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCLEKSGR 140
             +  V+    LF +M+   C PN  T++++L+ L   G+
Sbjct: 158 ANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQ 197



 Score = 96.3 bits (238), Expect = 8e-18
 Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 32/311 (10%)
 Frame = -3

Query: 859 RLDEIVKISSEYMNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLSMLESL 680
           R  ++VK     MN   Y  L++   +  ++N+A  ++  +     + D  AY  +L++L
Sbjct: 28  RCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDAL 87

Query: 679 CNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDGPPPDI 500
               K  +   +  +M  K  E D Y Y ++    GK  +      L++ M + G  P++
Sbjct: 88  AKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNL 147

Query: 499 YTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLIN----------------- 371
             YN +I +      VD T+ +F ++  ++CRP+  +++ ++N                 
Sbjct: 148 IAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEV 207

Query: 370 ---------------CLGKYGNVDEAHMRFREMQEKGFNPDVITYSTLIECFGKSEKVEM 236
                           L K G+  EAH  F  M       D   Y +++E    + K   
Sbjct: 208 SNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTE 267

Query: 235 ACRLFDEMLAEGCSPNIVTYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPDYITYAILER 56
           A  L  ++  +  S + V YN +L  L K  +T++  DLY  +K  G +PD  +Y I   
Sbjct: 268 ALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNI--- 324

Query: 55  LQSGSNKVGRV 23
           L S   + GRV
Sbjct: 325 LISSFGRAGRV 335



 Score = 92.8 bits (229), Expect = 9e-17
 Identities = 48/185 (25%), Positives = 94/185 (50%)
 Frame = -3

Query: 577 LGKFKQLTHIHDLYERMKKDGPPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPD 398
           +G F     +   ++ +KK     + YTY  L+ +  R+   +   +++ EL     + D
Sbjct: 17  IGIFGGGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLD 76

Query: 397 IVSYNSLINCLGKYGNVDEAHMRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFD 218
           I +YN L++ L K   VD+ +M F++M+ K   PD  TY+ +I   GK  K + +  LF 
Sbjct: 77  IFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQ 136

Query: 217 EMLAEGCSPNIVTYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSN 38
           EM  +G +PN++ YN ++  L  +    + + L+S +      P+  T++++  +     
Sbjct: 137 EMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEG 196

Query: 37  KVGRV 23
           ++GR+
Sbjct: 197 QLGRL 201


>ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
            mitochondrial-like [Glycine max]
          Length = 647

 Score =  474 bits (1221), Expect = e-132
 Identities = 222/291 (76%), Positives = 261/291 (89%)
 Frame = -3

Query: 874  EGKLGRLDEIVKISSEYMNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLS 695
            EGKL +LD IV IS +Y+NK IYAY VRTL K+GHA+EAHRLFCNMW+FHD+GD+DA +S
Sbjct: 349  EGKLNKLDNIVDISKKYINKQIYAYFVRTLSKVGHASEAHRLFCNMWNFHDKGDKDACMS 408

Query: 694  MLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDG 515
            MLESLC++ K  EAIDLL+ +HEKGI TDT MYN VF++LG+ KQ++HIHDLYE+MK+DG
Sbjct: 409  MLESLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDG 468

Query: 514  PPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAH 335
            PPPDI+TYNILISSFGRAGRVD  VK FEEL++SDC+PD++SYNSLINCLGK G+VDEAH
Sbjct: 469  PPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAH 528

Query: 334  MRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 155
            MRF+EMQEKG NPDV+TYSTLIECFGK++KVEMACRLFDEMLAE C+PN++TYNILLDCL
Sbjct: 529  MRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCL 588

Query: 154  EKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRVRRKNPIT 2
            E+SGRTAEAVDLY+ LK QGLTPD ITYA+LERLQSG +   R RR+NPIT
Sbjct: 589  ERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGGHGKLRFRRQNPIT 639



 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 62/224 (27%), Positives = 109/224 (48%)
 Frame = -3

Query: 694 MLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDG 515
           +L    N  +  +A  LL +M  + +       N++    G  + L     L   +KK  
Sbjct: 136 ILSKSTNPARFDQARSLLHDMDRRAVRGSISTVNILVGFFGAGEDLERCVSL---VKKWD 192

Query: 514 PPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAH 335
              + YTY  L+ ++ RA       +++ ++     R DI  YN L++ L K   V  ++
Sbjct: 193 LRLNAYTYKCLLQAYLRALDSSTAFRVYLDMIRHGYRLDIFGYNMLLDALAKDEKVC-SY 251

Query: 334 MRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 155
             F +M+ +   PDV TY+ +I   GKS K + A  LF  MLA+GC+PN++ YN +++ L
Sbjct: 252 KVFEDMKRRHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEAL 311

Query: 154 EKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRV 23
            K     +AV L+S +    + P+  TY+++  L     K+ ++
Sbjct: 312 AKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKL 355



 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 71/316 (22%), Positives = 130/316 (41%), Gaps = 73/316 (23%)
 Frame = -3

Query: 760  AHRLFCNMWSFHDRGDRDAYLSMLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFS 581
            ++++F +M   H   D   Y  M+     S KT EA+ L   M  KG   +   YN +  
Sbjct: 250  SYKVFEDMKRRHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIE 309

Query: 580  SLGKFKQLTHIHDLYERMKKDGPPPDIYTYNILIS---SFGRAGRVDDTVKIFEELDSSD 410
            +L K + +     L+ +M ++   P+ +TY+++++   + G+  ++D+ V I ++  +  
Sbjct: 310  ALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQ 369

Query: 409  CRPDIVSYNSLINCLGKYGNVDEAHMRF-------------------------------- 326
                   Y   +  L K G+  EAH  F                                
Sbjct: 370  I------YAYFVRTLSKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAI 423

Query: 325  ---REMQEKGFNPDVITYST-----------------------------------LIECF 260
                ++ EKG   D I Y+T                                   LI  F
Sbjct: 424  DLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSF 483

Query: 259  GKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPDY 80
            G++ +V++A + F+E+    C P++++YN L++CL K+G   EA   +  ++ +GL PD 
Sbjct: 484  GRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDV 543

Query: 79   ITYAILERLQSGSNKV 32
            +TY+ L      ++KV
Sbjct: 544  VTYSTLIECFGKTDKV 559



 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
 Frame = -3

Query: 703 YLSMLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMK 524
           Y  +L++   +  +  A  +  +M   G   D + YN++  +L K +++   + ++E MK
Sbjct: 200 YKCLLQAYLRALDSSTAFRVYLDMIRHGYRLDIFGYNMLLDALAKDEKVCS-YKVFEDMK 258

Query: 523 KDGPPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVD 344
           +    PD++TY I+I   G++ + D+ + +F+ + +  C P+++ YN++I  L K   VD
Sbjct: 259 RRHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVD 318

Query: 343 EAHMRFREMQEKGFNPDVITYSTLIECF---GKSEKVE---------------------- 239
           +A + F +M E    P+  TYS ++      GK  K++                      
Sbjct: 319 KAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQIYAYFVRTL 378

Query: 238 -------MACRLFDEMLAEGCSPNIVTYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPDY 80
                   A RLF  M       +      +L+ L  +G+  EA+DL + +  +G+T D 
Sbjct: 379 SKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAIDLLNKIHEKGITTDT 438

Query: 79  ITY 71
           I Y
Sbjct: 439 IMY 441


>ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355483603|gb|AES64806.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  474 bits (1220), Expect = e-131
 Identities = 222/291 (76%), Positives = 262/291 (90%)
 Frame = -3

Query: 874  EGKLGRLDEIVKISSEYMNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLS 695
            EG+L +LD IV++S +YMNK IYAY VRTL KLGH++EAHRLFCNMW+ HD+GD+DAY+S
Sbjct: 341  EGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMS 400

Query: 694  MLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDG 515
            MLESLC+S K  EAIDLL+  HEK I TDT MYN VF++LG+ KQ++HIHDLYE+MK+DG
Sbjct: 401  MLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDG 460

Query: 514  PPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAH 335
            PPPDI+TYNILISS+GRAGRVD  VKIFEEL++S+C+PD++SYNSLINCLGK G+VDEAH
Sbjct: 461  PPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAH 520

Query: 334  MRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 155
            MRF+EMQEKG NPDV+TYSTLIECFGK++KVEMAC LFDEM+AEGCSPN+VTYNILLDCL
Sbjct: 521  MRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCL 580

Query: 154  EKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRVRRKNPIT 2
            E+SGRTAEAVDLY+ LK QGLTPD ITYA+LERLQSG +   RVRR+NPIT
Sbjct: 581  ERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGRHGKLRVRRQNPIT 631



 Score =  105 bits (261), Expect = 2e-20
 Identities = 51/161 (31%), Positives = 83/161 (51%)
 Frame = -3

Query: 622 GIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDGPPPDIYTYNILISSFGRAGRVDDT 443
           G+  + Y Y  +     + +       +Y  M + G   DI+ +N+L+ +  +  +VD  
Sbjct: 183 GLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKA 242

Query: 442 VKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAHMRFREMQEKGFNPDVITYSTLIEC 263
            K+FE++    C PD  +Y  +I   GK G  DE+   F+ M EKGF  ++I Y+T+IE 
Sbjct: 243 YKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEA 302

Query: 262 FGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCLEKSGR 140
             K    + A  LF +M+  GC PN  TY++LL+ L   G+
Sbjct: 303 LAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQ 343



 Score = 90.5 bits (223), Expect = 5e-16
 Identities = 52/195 (26%), Positives = 97/195 (49%)
 Frame = -3

Query: 646 LLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDGPPPDIYTYNILISSFG 467
           LL +M ++G++      N++    G   +   +      +KK G   + Y+Y  L+  + 
Sbjct: 146 LLDDMEKRGVKGSISTVNILIGFFGDLDRCVGL------VKKWGLRFNAYSYKCLLQGYL 199

Query: 466 RAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAHMRFREMQEKGFNPDVI 287
           R    D    ++ ++       DI ++N L++ L K   VD+A+  F +M+ +   PD  
Sbjct: 200 RLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTF 259

Query: 286 TYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCLEKSGRTAEAVDLYSSL 107
           TY+ +I   GK+ K + +  LF  ML +G + N++ YN +++ L K     +AV L+S +
Sbjct: 260 TYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKM 319

Query: 106 KLQGLTPDYITYAIL 62
              G  P+  TY++L
Sbjct: 320 VENGCQPNEFTYSVL 334



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 32/244 (13%)
 Frame = -3

Query: 706 AYLSMLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERM 527
           +Y  +L+     R   +A  +  +M   G   D + +N++  +L K +++   + ++E M
Sbjct: 190 SYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDM 249

Query: 526 KKDGPPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNV 347
           K+    PD +TY I+I   G+AG+ D+++ +F+ +       ++++YN++I  L K    
Sbjct: 250 KRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMA 309

Query: 346 DEAHMRFREMQEKGFNPDVITYSTLIECF---GKSEK----VEM---------------- 236
           D+A + F +M E G  P+  TYS L+      G+  K    VEM                
Sbjct: 310 DKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRT 369

Query: 235 ---------ACRLFDEMLAEGCSPNIVTYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPD 83
                    A RLF  M       +   Y  +L+ L  SG+ AEA+DL +    + +T D
Sbjct: 370 LSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTD 429

Query: 82  YITY 71
            I Y
Sbjct: 430 TIMY 433



 Score = 86.7 bits (213), Expect = 7e-15
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 67/334 (20%)
 Frame = -3

Query: 871  GKLGRLDEIVKISSEYMNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLSM 692
            G L R   +VK      N   Y  L++   +L   ++A  ++ +M       D  A+  +
Sbjct: 170  GDLDRCVGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNML 229

Query: 691  LESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDGP 512
            L++L   +K  +A  +  +M  +  E DT+ Y ++    GK  +      L++ M + G 
Sbjct: 230  LDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGF 289

Query: 511  PPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLIN------------- 371
              ++  YN +I +  +    D  V +F ++  + C+P+  +Y+ L+N             
Sbjct: 290  TLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDN 349

Query: 370  -------------------CLGKYGNVDEAHMRFREM----------------------- 317
                                L K G+  EAH  F  M                       
Sbjct: 350  IVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSG 409

Query: 316  ------------QEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYN 173
                         EK    D I Y+T+    G+ ++V     L+++M  +G  P+I TYN
Sbjct: 410  KIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYN 469

Query: 172  ILLDCLEKSGRTAEAVDLYSSLKLQGLTPDYITY 71
            IL+    ++GR   AV ++  L+     PD I+Y
Sbjct: 470  ILISSYGRAGRVDSAVKIFEELENSNCQPDVISY 503


>ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
            mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  466 bits (1198), Expect = e-129
 Identities = 218/291 (74%), Positives = 260/291 (89%)
 Frame = -3

Query: 874  EGKLGRLDEIVKISSEYMNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLS 695
            EG+LGRLDE++++S++++NK IYAYLVRTL KLGH++EAHRLFCNMWSFHD GDRDAY+S
Sbjct: 387  EGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYIS 446

Query: 694  MLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDG 515
            MLESLC   KTVEAI+LLS +HEKGI TDT MYN V S+LGK KQ++H+HDLYE+MK+DG
Sbjct: 447  MLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDG 506

Query: 514  PPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINCLGKYGNVDEAH 335
            P PDI+TYNILISS GR G+V + V++FEEL+SSDC+PDI+SYNSLINCLGK G+VDEAH
Sbjct: 507  PFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAH 566

Query: 334  MRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 155
            MRF EMQ+KG NPDV+TYSTLIECFGK++KVEMA  LFD M+ +GC PNIVTYNILLDCL
Sbjct: 567  MRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCL 626

Query: 154  EKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRVRRKNPIT 2
            E++GRTAE VDLY+ L+ QGLTPD ITYAIL+RLQSGSN+  RVRR+NPIT
Sbjct: 627  ERAGRTAETVDLYAKLREQGLTPDSITYAILDRLQSGSNRKFRVRRQNPIT 677



 Score =  109 bits (272), Expect = 9e-22
 Identities = 66/235 (28%), Positives = 117/235 (49%)
 Frame = -3

Query: 727 HDRGDRDAYLSMLESLCNSRKTVEAIDLLSNMHEKGIETDTYMYNLVFSSLGKFKQLTHI 548
           HD       L ML    +S++  +  ++LS M    I       N++       + L   
Sbjct: 162 HDAFTYSRILLMLSHSSSSKRIDQVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELC 221

Query: 547 HDLYERMKKDGPPPDIYTYNILISSFGRAGRVDDTVKIFEELDSSDCRPDIVSYNSLINC 368
             L   +KK     + YTY  L+ +  R+   D    ++ E+ S+  + DI +YN L++ 
Sbjct: 222 TGL---IKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDA 278

Query: 367 LGKYGNVDEAHMRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEGCSPN 188
           L K   +D ++  F++M+ K  NPD  TY+ +I   GK  + E +  LF+EML +GC+PN
Sbjct: 279 LAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPN 338

Query: 187 IVTYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRV 23
           ++ YN ++  L KSG   +A+ L+ ++      P+  TY+I+  +     ++GR+
Sbjct: 339 LIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRL 393



 Score = 97.1 bits (240), Expect = 5e-18
 Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 32/300 (10%)
 Frame = -3

Query: 823  MNKPIYAYLVRTLGKLGHANEAHRLFCNMWSFHDRGDRDAYLSMLESLCNSRKTVEAIDL 644
            +N   Y  L++   +   ++ A  ++  MWS   + D  AY  +L++L    +   +  +
Sbjct: 232  LNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKV 291

Query: 643  LSNMHEKGIETDTYMYNLVFSSLGKFKQLTHIHDLYERMKKDGPPPDIYTYNILISSFGR 464
              +M  K    D Y Y ++    GK  +      L+E M   G  P++  YN +I +  +
Sbjct: 292  FKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSK 351

Query: 463  AGRVDDTVKIFEELDSSDCRPDIVSYNSLIN----------------------------- 371
            +G VD  + +F  +  ++CRP+  +Y+ ++N                             
Sbjct: 352  SGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAY 411

Query: 370  ---CLGKYGNVDEAHMRFREMQEKGFNPDVITYSTLIECFGKSEKVEMACRLFDEMLAEG 200
                L K G+  EAH  F  M       D   Y +++E   +  K   A  L  ++  +G
Sbjct: 412  LVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKG 471

Query: 199  CSPNIVTYNILLDCLEKSGRTAEAVDLYSSLKLQGLTPDYITYAILERLQSGSNKVGRVR 20
             S + + YN +L  L K  + +   DLY  +K  G  PD  TY I   L S   +VG+V+
Sbjct: 472  ISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNI---LISSLGRVGKVK 528