BLASTX nr result

ID: Lithospermum22_contig00027214 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00027214
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632043.1| PREDICTED: LOW QUALITY PROTEIN: Werner Syndr...    81   1e-13
emb|CBI17293.3| unnamed protein product [Vitis vinifera]               81   1e-13
ref|XP_002328909.1| predicted protein [Populus trichocarpa] gi|2...    71   1e-10
emb|CAN83417.1| hypothetical protein VITISV_041350 [Vitis vinifera]    71   1e-10
gb|AFK42451.1| unknown [Medicago truncatula]                           70   2e-10

>ref|XP_003632043.1| PREDICTED: LOW QUALITY PROTEIN: Werner Syndrome-like
           exonuclease-like [Vitis vinifera]
          Length = 331

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   SHSINPCRKNRY-NPYNS--QGKVTMRYPEISFKGNITYSRTXXXXXXXXXXLLTFVQSK 171
           S S++PC  NR+ N ++S  Q    MR P+I+F G+I YSRT          LL  V++K
Sbjct: 87  SFSLSPCPTNRFLNLFHSPCQENFKMRLPKINFGGHIVYSRTVTEVEKATAELLKIVETK 146

Query: 172 KQDDGQVVLGFDIEWKPTFKRGVPPGKA 255
           K++ GQ +LGFDIEW+PTF++GV  GKA
Sbjct: 147 KKELGQAILGFDIEWRPTFRKGVSQGKA 174


>emb|CBI17293.3| unnamed protein product [Vitis vinifera]
          Length = 301

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   SHSINPCRKNRY-NPYNS--QGKVTMRYPEISFKGNITYSRTXXXXXXXXXXLLTFVQSK 171
           S S++PC  NR+ N ++S  Q    MR P+I+F G+I YSRT          LL  V++K
Sbjct: 87  SFSLSPCPTNRFLNLFHSPCQENFKMRLPKINFGGHIVYSRTVTEVEKATAELLKIVETK 146

Query: 172 KQDDGQVVLGFDIEWKPTFKRGVPPGKA 255
           K++ GQ +LGFDIEW+PTF++GV  GKA
Sbjct: 147 KKELGQAILGFDIEWRPTFRKGVSQGKA 174


>ref|XP_002328909.1| predicted protein [Populus trichocarpa] gi|222839339|gb|EEE77676.1|
           predicted protein [Populus trichocarpa]
          Length = 323

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/83 (43%), Positives = 49/83 (59%)
 Frame = +1

Query: 7   SINPCRKNRYNPYNSQGKVTMRYPEISFKGNITYSRTXXXXXXXXXXLLTFVQSKKQDDG 186
           S++PC          QG V MRYP + F G I YSRT          LL  ++++K++  
Sbjct: 99  SLSPC----------QGNVKMRYPAMKFGGQILYSRTSIEVEKAARELLQSLEAEKREMD 148

Query: 187 QVVLGFDIEWKPTFKRGVPPGKA 255
           +V++GFDIEWKP+F  GV PGKA
Sbjct: 149 RVIIGFDIEWKPSFTTGVLPGKA 171


>emb|CAN83417.1| hypothetical protein VITISV_041350 [Vitis vinifera]
          Length = 229

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
 Frame = +1

Query: 1   SHSINPCRKNRY-NPYNS--QGKVTMRYPEISFKGNITYSRTXXXXXXXXXXLLTFVQSK 171
           S S++PC  NR+ N ++S  Q    MR P+++F G+I YSRT          LL  V++K
Sbjct: 87  SFSLSPCPTNRFLNLFHSPCQENFKMRLPKMNFGGHIVYSRTVTEVEKATAELLKIVETK 146

Query: 172 KQDDGQVVLGFDIEWKPTFKR 234
           K++ GQ +LGFDIEW+PTF++
Sbjct: 147 KKELGQAILGFDIEWRPTFRK 167


>gb|AFK42451.1| unknown [Medicago truncatula]
          Length = 311

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/68 (48%), Positives = 41/68 (60%)
 Frame = +1

Query: 49  SQGKVTMRYPEISFKGNITYSRTXXXXXXXXXXLLTFVQSKKQDDGQVVLGFDIEWKPTF 228
           S G +  R P + F G I YSRT           L  ++ KK+D  Q+ +GFDIEW+PTF
Sbjct: 91  SPGHLKTRLPVMKFCGKIMYSRTFTDVEKAVTKFLKIIEEKKRDMIQIPIGFDIEWRPTF 150

Query: 229 KRGVPPGK 252
           KRGVPPGK
Sbjct: 151 KRGVPPGK 158


Top