BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00027213
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB83148.1| putative protein [Arabidopsis thaliana]                51   1e-08
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                55   2e-07
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    53   3e-07
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        49   4e-07
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    47   2e-06

>emb|CAB83148.1| putative protein [Arabidopsis thaliana]
          Length = 280

 Score = 50.8 bits (120), Expect(2) = 1e-08
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -3

Query: 402 ETLWVKWIDVYRLKGNSLWGVKKK-STDSWIWRKFLRLRVLIKPFIDVSIGVG 247
           ++LWVKWI+ + LK    W VK+  S  SWIWRK ++ R   K    V +G G
Sbjct: 47  DSLWVKWIERFLLKKEPFWTVKENTSAGSWIWRKLIKFRDAAKTLCKVEVGNG 99



 Score = 33.1 bits (74), Expect(2) = 1e-08
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
 Frame = -2

Query: 265 CQYWCGNN--SNYLFDNWHRLGPLHEVLTS*QISWLRVNEKDIVADVLRNERVVTGRRVT 92
           C+   GN   +++ FD+W  LG L+++     +  + +N +  VAD  R       R   
Sbjct: 92  CKVEVGNGELASFWFDSWSPLGRLYDIAGDRGVIDMGINRQMTVADAWRTRHRRRHRNNA 151

Query: 91  PN-IQNLQNSRPQLQMNMPDVVQWRGKNE 8
            N I+++ +S+   + +  D + WRG ++
Sbjct: 152 LNAIEDVLHSQWLERTDRRDKIMWRGTHD 180


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 54.7 bits (130), Expect(2) = 2e-07
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -3

Query: 408 NKETLWVKWIDVYRLKGNSLWGVKKK-STDSWIWRKFLRLRVLIKPFIDVSIGVG 247
           N  +LW KW+  Y ++  S+W +K+  S  SWIWRK L++R + K F  V +G G
Sbjct: 544 NSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNG 598



 Score = 25.4 bits (54), Expect(2) = 2e-07
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -2

Query: 250 GNNSNYLFDNWHRLGPLHEVLTS*QISWLRVNEKDIVADV-LRNERVVTGRRVTPNIQNL 74
           G ++++ +D+W   G L + +       L +  +  VAD   R  R      +   I+ +
Sbjct: 598 GESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRHRTSLLNEIEEM 657

Query: 73  QNSRPQLQMNMPDVVQWRGKNE 8
              +     +  D V WRGKN+
Sbjct: 658 MAYQRIHHSDAEDTVLWRGKND 679


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 53.1 bits (126), Expect(2) = 3e-07
 Identities = 23/56 (41%), Positives = 32/56 (57%)
 Frame = -3

Query: 402 ETLWVKWIDVYRLKGNSLWGVKKKSTDSWIWRKFLRLRVLIKPFIDVSIGVGITVT 235
           ++LWV+WI  Y LK N+ W  +  S  SW+W+K L+ R   K F  V I  G T +
Sbjct: 417 DSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETAS 472



 Score = 26.2 bits (56), Expect(2) = 3e-07
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -2

Query: 250 GNNSNYLFDNWHRLGPLHEVLTS*QISWLRVNEKDIVADVLRNERVVTGRRVTPN-IQNL 74
           G  +++ +D+W   G L +VL       + +++   +A+     R    R  T N I+  
Sbjct: 468 GETASFWYDDWSSKGRLIDVLGERGQFDMGISKFKTLAEAWDRRRSRYHRAETLNTIEQE 527

Query: 73  QNSRPQLQMNMPDVVQWRGKNE 8
                Q ++ + DV  W+GKN+
Sbjct: 528 LLLAKQNRVAVEDVFLWKGKND 549


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 48.9 bits (115), Expect(2) = 4e-07
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = -3

Query: 405  KETLWVKWIDVYRLKGNSLWGVKKKSTDSWIWRKFLRLRVLIKPFIDVSIGVGI 244
            K++LW  W  ++ L   S W V+   +DSW W++ L LR L   F+   +G G+
Sbjct: 891  KDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGL 944



 Score = 29.6 bits (65), Expect(2) = 4e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 265  CQYWCGNNSNYLFDNWHRLGPLHEVLTS*QISWLRV 158
            C+   G  ++Y +DNW  LGPL  ++     S LRV
Sbjct: 938  CKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRV 973


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 47.0 bits (110), Expect(2) = 2e-06
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -3

Query: 408 NKETLWVKWIDVYRL-KGNSLWGVKKKSTDSWIWRKFLRLRVLIKPFIDVSIGVG 247
           N  +LWV W   + L K  S W   +K  DSW W+  LRLRV+ + FI  ++G G
Sbjct: 787 NSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNG 841



 Score = 29.6 bits (65), Expect(2) = 2e-06
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 265 CQYWCGNNSNYLFDNWHRLGPLHEVLTS*QISWLRVNEKDIVADVLRNE 119
           C    G ++++ FDNW   GPL + L +     LRV+    ++DV  +E
Sbjct: 836 CNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSE 884