BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00026723
         (1254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi...   352   e-101
ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago t...   342   5e-97
gb|AFN53666.1| hypothetical protein [Linum usitatissimum]             253   7e-69
ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containi...   259   4e-68
ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi...   257   2e-67

>ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like
            [Glycine max]
          Length = 540

 Score =  352 bits (902), Expect(2) = e-101
 Identities = 166/261 (63%), Positives = 210/261 (80%)
 Frame = +2

Query: 140  HGESVHGYLKRSCLECDVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDVLAWTAMISAYA 319
            HG+ VHGYL+R+ +ECDVVIGTAL++MYGKCG ++KA EIF+ MP KD  AWT MIS +A
Sbjct: 279  HGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFA 338

Query: 320  LHGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQGRFCFDAMKYVYGIQPKV 499
            LHG G +AF  F EM +  ++PN VTFV LL+AC+HSG+V+QGR+CFD MK VY I+P+V
Sbjct: 339  LHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQV 398

Query: 500  QHYACLIDILGRACLFEEAERVIRSMPMEPDVYVWGALLGCCQMHGNVELGEKVAKCLIN 679
             HYAC++DIL RA LF+E+E +IRSMPM+PDVYVWGALLG CQMHGNVELGEKV   LI+
Sbjct: 399  YHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVELGEKVVHHLID 458

Query: 680  LEPLNHAFYVNLCDVYAKAGKLDSFKIVRSMMKDKGIKKLVPGCSMTEIDGVIHEFSVKG 859
            LEP NHAFYVN CD+YAKAG  D+ K +R++MK+K I+K +PGCSM EI+G + EFS  G
Sbjct: 459  LEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCSMIEINGEVQEFSAGG 518

Query: 860  SPGVQMEDILNVITSLSYEMK 922
            S  + M++++ V+  LS EMK
Sbjct: 519  SSELPMKELVLVLNGLSNEMK 539



 Score = 44.3 bits (103), Expect(2) = e-101
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +1

Query: 4   KEALILFDEMKELADHGGGLYNSVVHPDKITVACVLSACASVGAI 138
           KE+L LF EM+ L+D        +V PDKIT+A VLSACA +GAI
Sbjct: 240 KESLELFHEMQILSD-------DMVKPDKITIASVLSACAQLGAI 277


>ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
            gi|355497290|gb|AES78493.1| Pentatricopeptide repeat
            protein [Medicago truncatula]
          Length = 541

 Score =  342 bits (876), Expect(2) = 5e-97
 Identities = 161/261 (61%), Positives = 210/261 (80%)
 Frame = +2

Query: 140  HGESVHGYLKRSCLECDVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDVLAWTAMISAYA 319
            HG+ VH YL+++ +ECDVVIGTAL++MYGKCG +++A+EIF  MP KD  AWTAMIS +A
Sbjct: 283  HGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFA 342

Query: 320  LHGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQGRFCFDAMKYVYGIQPKV 499
            LHG+G++AF+ F EM +  ++PN VTFV LL+ACSHSG+V+QGR CFD MK VY I+P++
Sbjct: 343  LHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQI 402

Query: 500  QHYACLIDILGRACLFEEAERVIRSMPMEPDVYVWGALLGCCQMHGNVELGEKVAKCLIN 679
             HYAC++DIL RA LF+EA  +IRSMPM+PDVYVWGALLG CQMHGN++LGEKVA  LI+
Sbjct: 403  YHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLID 462

Query: 680  LEPLNHAFYVNLCDVYAKAGKLDSFKIVRSMMKDKGIKKLVPGCSMTEIDGVIHEFSVKG 859
            LEP NHAFY+NLCD+Y KAGK D+ K +R+ MK++GI+  +PGCS+ EI+GV+ EFSV  
Sbjct: 463  LEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEINGVVQEFSVGE 522

Query: 860  SPGVQMEDILNVITSLSYEMK 922
             P   M+++  V+  L  EMK
Sbjct: 523  IP---MKELPLVLDRLRNEMK 540



 Score = 40.8 bits (94), Expect(2) = 5e-97
 Identities = 23/45 (51%), Positives = 31/45 (68%)
 Frame = +1

Query: 4   KEALILFDEMKELADHGGGLYNSVVHPDKITVACVLSACASVGAI 138
           KE+L +F EM+ L+       + VV PDKIT+A VLSACA +G+I
Sbjct: 243 KESLEIFHEMQFLSG------DDVVKPDKITIASVLSACALLGSI 281


>gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  253 bits (646), Expect(2) = 7e-69
 Identities = 121/263 (46%), Positives = 172/263 (65%)
 Frame = +2

Query: 143  GESVHGYLKRSCLECDVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDVLAWTAMISAYAL 322
            GE +HGY+K+  ++ +  + T+L+DMY K G +EKA+E+F  +  KDV  W+AMI+  A+
Sbjct: 496  GEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAM 555

Query: 323  HGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQGRFCFDAMKYVYGIQPKVQ 502
            HG GE A E F +M +T+++PN+VTF  LL ACSHSG+VD+G+  FD M+ VYG+ PK +
Sbjct: 556  HGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTK 615

Query: 503  HYACLIDILGRACLFEEAERVIRSMPMEPDVYVWGALLGCCQMHGNVELGEKVAKCLINL 682
            HY+C++D+LGRA   EEA + I  MP+ P   VWGALLG C +HGN+EL EK    L+ +
Sbjct: 616  HYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEI 675

Query: 683  EPLNHAFYVNLCDVYAKAGKLDSFKIVRSMMKDKGIKKLVPGCSMTEIDGVIHEFSVKGS 862
            EP NH  YV L ++YAK G  +    +R  M+D G+KK   GCS  EIDG +HEF V  +
Sbjct: 676  EPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKK-ETGCSSIEIDGTVHEFIVGDN 734

Query: 863  PGVQMEDILNVITSLSYEMKFNG 931
                  DI   +  +   ++ +G
Sbjct: 735  AHPLSRDIYAKLDEIMARLRSHG 757



 Score = 35.4 bits (80), Expect(2) = 7e-69
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 1   PKEALILFDEMKELADHGGGLYNSVVHPDKITVACVLSACASVGAI 138
           PKEAL +F E++        L  S   PD++T+   LSACA +GA+
Sbjct: 456 PKEALAIFRELQ--------LTKSGARPDQVTLLSTLSACAQLGAM 493



 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
 Frame = +2

Query: 188 DVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDVLAWTAMISAYALHGYGEEAFETFREMV 367
           DVV  T ++D Y K      A +IF  MP KD+ AW  +IS Y   G  +EA   FRE+ 
Sbjct: 408 DVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQ 467

Query: 368 QTE--IRPNAVTFVALLTACSHSGMVDQGRFCFDAMKYVYGIQPKVQHYACLIDILGRAC 541
            T+   RP+ VT ++ L+AC+  G +D G +    +K    IQ        LID+  ++ 
Sbjct: 468 LTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIK-KERIQLNRNLATSLIDMYSKSG 526

Query: 542 LFEEAERVIRSMPMEPDVYVWGALLGCCQMHGNVELGEKVAKCLINLEPL----NHAFYV 709
             E+A  V  S+    DV+VW A++    MHG    GE   +  ++++      N   + 
Sbjct: 527 DVEKAIEVFHSIG-NKDVFVWSAMIAGLAMHGR---GEAAIELFLDMQETQVKPNSVTFT 582

Query: 710 NLCDVYAKAGKLDSFK 757
           NL    + +G +D  K
Sbjct: 583 NLLCACSHSGLVDEGK 598



 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
 Frame = +2

Query: 143 GESVHGYLKRSCLECDVVIGTALLDMYGKCGCIEKAMEIFKWMP--IKDVLAWTAMISAY 316
           G++VHG   ++    DV +  +L+  Y  CG ++ A  +F+ +    KD+++W +M++ +
Sbjct: 259 GKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGF 318

Query: 317 ALHGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQGR 451
              GY ++A + F  M    + PNAVT V++++AC+ +  +  GR
Sbjct: 319 VQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGR 363


>ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like
            [Cucumis sativus]
          Length = 666

 Score =  259 bits (662), Expect(2) = 4e-68
 Identities = 117/263 (44%), Positives = 175/263 (66%)
 Frame = +2

Query: 143  GESVHGYLKRSCLECDVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDVLAWTAMISAYAL 322
            G  VH YLKR+ ++ D V+GTALLDMY KCG ++   E+F+ M  +++  W AMI   A+
Sbjct: 313  GRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAI 372

Query: 323  HGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQGRFCFDAMKYVYGIQPKVQ 502
            HG  E+A E F ++ +  ++PN +T V +LTAC+H+G VD+G   F  M+  YG+ P+++
Sbjct: 373  HGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELE 432

Query: 503  HYACLIDILGRACLFEEAERVIRSMPMEPDVYVWGALLGCCQMHGNVELGEKVAKCLINL 682
            HY C++D+LGR+ LF EAE +I SMPM+P+  VWGALLG C++HGN +L E+V K L+ L
Sbjct: 433  HYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLEL 492

Query: 683  EPLNHAFYVNLCDVYAKAGKLDSFKIVRSMMKDKGIKKLVPGCSMTEIDGVIHEFSVKGS 862
            EP N   YV L ++YAK G+ D    +R +MKD+GI K VPG S+ +++G +HEF +   
Sbjct: 493  EPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI-KTVPGVSIVDLNGTVHEFKMGDG 551

Query: 863  PGVQMEDILNVITSLSYEMKFNG 931
               QM++I   +  +   ++  G
Sbjct: 552  SHPQMKEIYRKLKIIKERLQMAG 574



 Score = 26.6 bits (57), Expect(2) = 4e-68
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 4   KEALILFDEMKELADHGGGLYNSVVHPDKITVACVLSACASVGAI 138
           KEAL +F +M+               P +  ++ VL+AC+++GAI
Sbjct: 276 KEALEIFQQMQR----------EETRPGRFILSSVLAACSNIGAI 310



 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
 Frame = +2

Query: 182 ECDVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDV------------------------- 286
           E DVV    ++D Y KCG +E A  +F  MP+K++                         
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE 253

Query: 287 ------LAWTAMISAYALHGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQG 448
                 ++W++M+  Y   G  +EA E F++M + E RP      ++L ACS+ G +DQG
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313

Query: 449 RFCFDAMKYVYGIQPKVQHYACLIDILGRACLFEEAERVIRSMPMEPDVYVWGALLGCCQ 628
           R+    +K    I+        L+D+  +    +    V   M  E +++ W A++G   
Sbjct: 314 RWVHAYLKR-NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM-KEREIFTWNAMIGGLA 371

Query: 629 MHGNVE 646
           +HG  E
Sbjct: 372 IHGRAE 377


>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like
            [Cucumis sativus]
          Length = 666

 Score =  257 bits (657), Expect(2) = 2e-67
 Identities = 116/263 (44%), Positives = 175/263 (66%)
 Frame = +2

Query: 143  GESVHGYLKRSCLECDVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDVLAWTAMISAYAL 322
            G  VH YLKR+ ++ D V+GTALLDMY KCG ++   E+F+ M  +++  W AMI   A+
Sbjct: 313  GRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAI 372

Query: 323  HGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQGRFCFDAMKYVYGIQPKVQ 502
            HG  E+A E F ++ +  ++PN +T V +LTAC+H+G VD+G   F  M+  YG+ P+++
Sbjct: 373  HGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELE 432

Query: 503  HYACLIDILGRACLFEEAERVIRSMPMEPDVYVWGALLGCCQMHGNVELGEKVAKCLINL 682
            HY C++D+LGR+ LF EAE +I SMPM+P+  VWGALLG C++HGN +L E+V K L+ L
Sbjct: 433  HYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLEL 492

Query: 683  EPLNHAFYVNLCDVYAKAGKLDSFKIVRSMMKDKGIKKLVPGCSMTEIDGVIHEFSVKGS 862
            EP N   YV L ++YAK G+ D    +R +MK++GI K VPG S+ +++G +HEF +   
Sbjct: 493  EPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGI-KTVPGVSIVDLNGTVHEFKMGDG 551

Query: 863  PGVQMEDILNVITSLSYEMKFNG 931
               QM++I   +  +   ++  G
Sbjct: 552  SHPQMKEIYRKLKIIKERLQMAG 574



 Score = 26.6 bits (57), Expect(2) = 2e-67
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 4   KEALILFDEMKELADHGGGLYNSVVHPDKITVACVLSACASVGAI 138
           KEAL +F +M+               P +  ++ VL+AC+++GAI
Sbjct: 276 KEALEIFQQMQR----------EETRPGRFILSSVLAACSNIGAI 310



 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
 Frame = +2

Query: 182 ECDVVIGTALLDMYGKCGCIEKAMEIFKWMPIKDV------------------------- 286
           E DVV    ++D Y KCG +E A  +F  MP+K++                         
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE 253

Query: 287 ------LAWTAMISAYALHGYGEEAFETFREMVQTEIRPNAVTFVALLTACSHSGMVDQG 448
                 ++W++M+  Y   G  +EA E F++M + E RP      ++L ACS+ G +DQG
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313

Query: 449 RFCFDAMKYVYGIQPKVQHYACLIDILGRACLFEEAERVIRSMPMEPDVYVWGALLGCCQ 628
           R+    +K    I+        L+D+  +    +    V   M  E +++ W A++G   
Sbjct: 314 RWVHAYLKR-NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM-KEREIFTWNAMIGGLA 371

Query: 629 MHGNVE 646
           +HG  E
Sbjct: 372 IHGRAE 377