BLASTX nr result

ID: Lithospermum22_contig00026505 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00026505
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313880.1| predicted protein [Populus trichocarpa] gi|2...    59   5e-07
ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Gly...    57   2e-06
ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cuc...    56   3e-06
ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, puta...    55   6e-06
ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata s...    54   1e-05

>ref|XP_002313880.1| predicted protein [Populus trichocarpa] gi|222850288|gb|EEE87835.1|
           predicted protein [Populus trichocarpa]
          Length = 1191

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 8/51 (15%)
 Frame = +3

Query: 312 SFFCSYLAVKNQKLHQQFDAEASTSSH--------IFQGVSIFVDGYTTPS 440
           S F SY+  KN+KL  QF+AEASTSSH        IFQGVSIF+DG+T PS
Sbjct: 59  SNFGSYMVEKNRKLQHQFEAEASTSSHPGSSSGKLIFQGVSIFIDGFTIPS 109


>ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Glycine max]
          Length = 1115

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 5/48 (10%)
 Frame = +3

Query: 312 SFFCSYLAVKNQKLHQQFDAEASTSS-----HIFQGVSIFVDGYTTPS 440
           S F SY+  KN+KLH QF+A+ASTSS      +F GVSIFVDG+T PS
Sbjct: 56  SDFASYMTEKNRKLHNQFEAQASTSSLTLSASLFSGVSIFVDGFTIPS 103


>ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
          Length = 1155

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 8/51 (15%)
 Frame = +3

Query: 312 SFFCSYLAVKNQKLHQQFDAEASTSSH--------IFQGVSIFVDGYTTPS 440
           S F SY+  KN+KLH QF+ +AS++SH        IFQGVSIFVDG+T PS
Sbjct: 62  SDFGSYMVEKNRKLHNQFNLDASSASHSGVNSGNQIFQGVSIFVDGFTIPS 112


>ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
           gi|223542041|gb|EEF43585.1| terminal deoxycytidyl
           transferase rev1, putative [Ricinus communis]
          Length = 1200

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/47 (61%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
 Frame = +3

Query: 312 SFFCSYLAVKNQKLHQQFDAEASTSSH----IFQGVSIFVDGYTTPS 440
           S F SY+ VKN+KL  QF+A AS SS+    IF GVSIFVDG+T+PS
Sbjct: 62  SDFSSYMVVKNRKLQNQFNAAASNSSNGDGLIFNGVSIFVDGFTSPS 108


>ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
           gi|297311162|gb|EFH41586.1| polymerase ATREV1-1105
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1105

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 30/51 (58%), Positives = 34/51 (66%), Gaps = 8/51 (15%)
 Frame = +3

Query: 312 SFFCSYLAVKNQKLHQQFDAEASTSSH--------IFQGVSIFVDGYTTPS 440
           S F SY+ VKN+KL  QF+ EAS SS         IFQGVSIFVDG+T PS
Sbjct: 52  SDFGSYMEVKNRKLQNQFETEASASSRGISGSEKLIFQGVSIFVDGFTIPS 102


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