BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00026280
         (1805 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   153   2e-42
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   148   8e-42
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]             138   5e-40
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]              138   5e-40
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   145   9e-40

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  153 bits (387), Expect(2) = 2e-42
 Identities = 90/269 (33%), Positives = 140/269 (52%), Gaps = 8/269 (2%)
 Frame = +3

Query: 276  IKMRLDRVLANADWSILFPNSTVSHLPMIGVDHCPFLLDTEANKTMYKRRFVFDRRWVEK 455
            IK RLDR L N  WS   PN+ + HLP IG DH P LLD+        R F F++ W   
Sbjct: 797  IKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNPKMLNKTRLFRFEQMWTTH 856

Query: 456  EGCEEVIRATWSISVKGSRWFQVCKKVKNVKLELISWCRKNNFNSQVRIDDLQTMIKKVY 635
            E   +VI+ +W  +  GS      + + +    L  W ++   N  V++ DL + I+K++
Sbjct: 857  EEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQVADLLSDIEKLH 916

Query: 636  D--------EVNLNRDDLVYLEKELEIAWGEEEIYWKTRSRDQHLKEGDKNINFFHASTI 791
                     ++N+  D +  L       W ++E+YW  RSR   LK GD+N +FFH +TI
Sbjct: 917  QSNPPDAHHQINILTDQVTKL-------WTQDEMYWHQRSRVNWLKLGDQNSSFFHQTTI 969

Query: 792  LRRRQNNILGIEDKGGSWKEGPEEVEKIVFDYFEDIFSANGVCEPELAVSDLQGRVTTEM 971
             RR+ N I+ ++D  G+W +   +V     DYF  ++ +NG  + E  +  +   VT EM
Sbjct: 970  QRRQYNKIVRLKDDHGNWLDSEADVALQFLDYFTALYQSNGPQQWEEVLDFVDTAVTAEM 1029

Query: 972  N*RLTRHIIGEEVRAAVFEMPLNKSPGPN 1058
            N  L+  +   EV+ AVF++   K+PGP+
Sbjct: 1030 NKILSSPVSLLEVKKAVFDLGATKAPGPD 1058



 Score = 47.8 bits (112), Expect(2) = 2e-42
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +1

Query: 97  WCLMGDCNDIVTNKEKEGGNERSESSLNMFRDFIQEGALLDLDFVGNPFTWCNS*NGR 270
           W ++GD N+++   EK GG       + +FRDF+  G L DL F G  F+W    +GR
Sbjct: 737 WLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNNGHLRDLHFKGPGFSWFAMRHGR 794


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  148 bits (374), Expect(2) = 8e-42
 Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 15/285 (5%)
 Frame = +3

Query: 243  YLVQQLKWTR------CIKMRLDRVLANADWSILFPNSTVSHLPMIGVDHCPFLLDTEAN 404
            Y+  +  W R       I+ RLDR+LAN +W   FP+  V HLP    DH P LL T  N
Sbjct: 175  YVGNRFTWQRGNSPSTLIRERLDRMLANDEWCDNFPSWEVVHLPRYRSDHAPLLLKTGVN 234

Query: 405  KTMYK--RRFVFDRRWVEKEGCEEVIRATWSISVKGSRWFQVCKKVKNVKLELISWCRKN 578
             +  +  + F F+  W+ KE C +++   W+    GS    +  ++  V   L +W  K 
Sbjct: 235  DSFRRGNKLFKFEAMWLSKEECGKIVEEAWN----GSAGEDITNRLDEVSRSLSTWATKT 290

Query: 579  NFNSQVRIDDLQTMIKKVYDEVNLNRDDLVYLEKELEIAWGE-------EEIYWKTRSRD 737
              N + R  +  T++  +       RD      ++  I  G+       EE YW  R+R 
Sbjct: 291  FGNLKKRKKEALTLLNGLQQ-----RDPDASTLEQCRIVSGDLDEIHRLEESYWHARARA 345

Query: 738  QHLKEGDKNINFFHASTILRRRQNNILGIEDKGGSWKEGPEEVEKIVFDYFEDIFSANGV 917
              +++GDKN  +FH     R+R+N I  + D+ G WK+G EE+  +V  YFE +F+ +  
Sbjct: 346  NEIRDGDKNTKYFHHKASQRKRRNTINELLDENGVWKKGREEICGVVQHYFEGLFATDSP 405

Query: 918  CEPELAVSDLQGRVTTEMN*RLTRHIIGEEVRAAVFEMPLNKSPG 1052
               ELA+  L   V+T+MN  L     G+EV+ A+F M  NK+PG
Sbjct: 406  VNMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPG 450



 Score = 50.4 bits (119), Expect(2) = 8e-42
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = +1

Query: 109 GDCNDIVTNKEKEGGNERSESSLNMFRDFIQEGALLDLDFVGNPFTW 249
           GD N+I + +EKEGG  R E  ++ FR+ I + A+ DL +VGN FTW
Sbjct: 136 GDFNEITSIEEKEGGAPRCERVMDAFREVIDDCAVKDLGYVGNRFTW 182


>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score =  138 bits (348), Expect(2) = 5e-40
 Identities = 82/268 (30%), Positives = 139/268 (51%)
 Frame = +3

Query: 264  WTRCIKMRLDRVLANADWSILFPNSTVSHLPMIGVDHCPFLLDTEANKTMYKRRFVFDRR 443
            W +C   RLDR   N +W   FP S  + L   G DH P L+   +++  Y+ +F FD+R
Sbjct: 152  WIQC---RLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKR 208

Query: 444  WVEKEGCEEVIRATWSISVKGSRWFQVCKKVKNVKLELISWCRKNNFNSQVRIDDLQTMI 623
            ++ KE  +E I  TWS    G+    V  +++  +  L SW ++NN NS  +I+ L+  +
Sbjct: 209  FLFKEDVKEAIIRTWSRGKHGTN-ISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL 267

Query: 624  KKVYDEVNLNRDDLVYLEKELEIAWGEEEIYWKTRSRDQHLKEGDKNINFFHASTILRRR 803
            +K    V      +  L+K+L  A+ EEE YWK +SR + L+ G++N  +FHA+    R+
Sbjct: 268  EKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQ 327

Query: 804  QNNILGIEDKGGSWKEGPEEVEKIVFDYFEDIFSANGVCEPELAVSDLQGRVTTEMN*RL 983
            +  I  ++D  G+ +       ++   YF ++F ++         S L  RV+  MN  L
Sbjct: 328  RKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESL 387

Query: 984  TRHIIGEEVRAAVFEMPLNKSPGPNRMT 1067
               +  +E++ AVF +    +PGP+ M+
Sbjct: 388  VGEVSAQEIKEAVFSIKPASAPGPDGMS 415



 Score = 54.3 bits (129), Expect(2) = 5e-40
 Identities = 26/78 (33%), Positives = 40/78 (51%)
 Frame = +1

Query: 16  VYVSCENGLREKQLKDLLHVVLGTPGNWCLMGDCNDIVTNKEKEGGNERSESSLNMFRDF 195
           VY   +   R +  + +  + +G    WC+ GD NDI+ N EK GG  RS+     F + 
Sbjct: 67  VYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEM 126

Query: 196 IQEGALLDLDFVGNPFTW 249
           I+   L+++   GN FTW
Sbjct: 127 IKGCDLVEMPAHGNGFTW 144


>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
          Length = 1254

 Score =  138 bits (348), Expect(2) = 5e-40
 Identities = 82/268 (30%), Positives = 139/268 (51%)
 Frame = +3

Query: 264  WTRCIKMRLDRVLANADWSILFPNSTVSHLPMIGVDHCPFLLDTEANKTMYKRRFVFDRR 443
            W +C   RLDR   N +W   FP S  + L   G DH P L+   +++  Y+ +F FD+R
Sbjct: 155  WIQC---RLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKR 211

Query: 444  WVEKEGCEEVIRATWSISVKGSRWFQVCKKVKNVKLELISWCRKNNFNSQVRIDDLQTMI 623
            ++ KE  +E I  TWS    G+    V  +++  +  L SW ++NN NS  +I+ L+  +
Sbjct: 212  FLFKEDVKEAIIRTWSRGKHGTN-ISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL 270

Query: 624  KKVYDEVNLNRDDLVYLEKELEIAWGEEEIYWKTRSRDQHLKEGDKNINFFHASTILRRR 803
            +K    V      +  L+K+L  A+ EEE YWK +SR + L+ G++N  +FHA+    R+
Sbjct: 271  EKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQ 330

Query: 804  QNNILGIEDKGGSWKEGPEEVEKIVFDYFEDIFSANGVCEPELAVSDLQGRVTTEMN*RL 983
            +  I  ++D  G+ +       ++   YF ++F ++         S L  RV+  MN  L
Sbjct: 331  RKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESL 390

Query: 984  TRHIIGEEVRAAVFEMPLNKSPGPNRMT 1067
               +  +E++ AVF +    +PGP+ M+
Sbjct: 391  VGEVSAQEIKEAVFSIKPASAPGPDGMS 418



 Score = 54.3 bits (129), Expect(2) = 5e-40
 Identities = 26/78 (33%), Positives = 40/78 (51%)
 Frame = +1

Query: 16  VYVSCENGLREKQLKDLLHVVLGTPGNWCLMGDCNDIVTNKEKEGGNERSESSLNMFRDF 195
           VY   +   R +  + +  + +G    WC+ GD NDI+ N EK GG  RS+     F + 
Sbjct: 70  VYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEM 129

Query: 196 IQEGALLDLDFVGNPFTW 249
           I+   L+++   GN FTW
Sbjct: 130 IKGCDLVEMPAHGNGFTW 147


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  145 bits (365), Expect(2) = 9e-40
 Identities = 84/272 (30%), Positives = 147/272 (54%), Gaps = 2/272 (0%)
 Frame = +3

Query: 276  IKMRLDRVLANADWSILFPNSTVSHLPMIGVDHCPFLLDTEANKTMYKRRFVFDRRWVEK 455
            +K  LDR   N++ + LFP + +  L   G DH P  L  E  +T   R F FD+R +E 
Sbjct: 571  VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRLLEV 630

Query: 456  EGCEEVIRATWSISVKGSRWFQVCKKVKNVKLELISWCRKNNFNSQVRIDDLQTMIKKVY 635
               +  ++A W+ ++ G R   +  +V+  +  +     K+N NS++RI+ LQ  + K  
Sbjct: 631  PHFKTYVKAGWNKAINGQRK-HLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAM 689

Query: 636  DEVN-LNRDDLVYLEKELEIAWGEEEIYWKTRSRDQHLKEGDKNINFFHASTILRRRQNN 812
              VN   R  + ++++EL +A+ +EE YW+ +SR+Q +KEGD+N  FFHA T  R   N 
Sbjct: 690  SSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNR 749

Query: 813  ILGIEDKGGSWKEGPEEVEKIVFDYFEDIFSANGVCEPELAVSDLQGRVTTEMN*RLTRH 992
            ++ I+D+ G    G +E+     ++F  ++ +NG     +  +  +  VT ++N  LT+ 
Sbjct: 750  LVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKD 809

Query: 993  IIGEEVRAAVFEMPLNKSPGPNRMTVD-YGSC 1085
            +   E+  A+  +  +K+PGP+ +T   Y SC
Sbjct: 810  LSDLEIYNAICHIGDDKAPGPDGLTARFYKSC 841



 Score = 47.0 bits (110), Expect(2) = 9e-40
 Identities = 20/51 (39%), Positives = 32/51 (62%)
 Frame = +1

Query: 97  WCLMGDCNDIVTNKEKEGGNERSESSLNMFRDFIQEGALLDLDFVGNPFTW 249
           W L+GD N+I++N EK GG +R E +   FR+ +    L D+  +G+ F+W
Sbjct: 512 WILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSW 562