BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025837
         (578 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511477.1| pentatricopeptide repeat-containing protein,...   314   8e-84
ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis...   311   5e-83
ref|XP_002322139.1| predicted protein [Populus trichocarpa] gi|2...   310   9e-83
ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arab...   310   1e-82
ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containi...   305   5e-81

>ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550592|gb|EEF52079.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 754

 Score =  314 bits (804), Expect = 8e-84
 Identities = 150/186 (80%), Positives = 168/186 (90%)
 Frame = +3

Query: 21  KAKSKELILGNPSFTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTHV 200
           +AK+KEL+LGNPS  VEKGKYSYDVETLINKLSSLPPRGSIARCL+ FKNKLSL DF  V
Sbjct: 53  RAKTKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARCLEIFKNKLSLNDFALV 112

Query: 201 FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNS 380
           FKEFA RGDWQRSLRLFKYMQRQIWCKPNEHIYT++IS+LGREGLLEK+ E+F EMP + 
Sbjct: 113 FKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHG 172

Query: 381 VTRSVYSYTAIINAYGRHGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGGYDWEGL 560
           V RSV+SYTA+IN+YGRHG+YEVSLELL RMK E++ PS LTYNTV+NSCARGG +WEGL
Sbjct: 173 VPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGL 232

Query: 561 LSLFGE 578
           LSLF E
Sbjct: 233 LSLFAE 238



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
 Frame = +3

Query: 63  TVEKGKYSYDVETLIN------KLSSLPPRGSIARCLDTFKNKLSLADFTHVFKEFAARG 224
           T+ +G    D+ T  N      KL+ L     + + +++  N   ++ +  + + +A++G
Sbjct: 273 TMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKG 332

Query: 225 DWQRSLRLFKYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTRSVYSY 404
           D + ++ +F+ MQ +  C PN   Y++++++ G  G  +   E+F EM +++    V +Y
Sbjct: 333 DIRHAMGVFRQMQ-EARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTY 391

Query: 405 TAIINAYGRHGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGG 542
             +I  +G  G ++  + L   M  E + P+  TY  ++ +C +GG
Sbjct: 392 NVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGG 437



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/111 (31%), Positives = 54/111 (48%)
 Frame = +3

Query: 210 FAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTR 389
           F   G ++  + LF  M  +   +PN   Y  +I   G+ GL E A ++   M    +  
Sbjct: 398 FGEGGYFKEVVTLFHDMVEEN-VEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVP 456

Query: 390 SVYSYTAIINAYGRHGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGG 542
           S  +YT +I AYG+   YE +L +   M      P+  TYN+++N  ARGG
Sbjct: 457 STKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGG 507


>ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
           gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
           gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535
           DUF17 domains [Arabidopsis thaliana]
           gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical
           protein; 81052-84129 [Arabidopsis thaliana]
           gi|332197518|gb|AEE35639.1| plastid transcriptionally
           active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  311 bits (797), Expect = 5e-83
 Identities = 150/186 (80%), Positives = 166/186 (89%)
 Frame = +3

Query: 21  KAKSKELILGNPSFTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTHV 200
           KAK+K+L+LGNPS +VEKGKYSYDVE+LINKLSSLPPRGSIARCLD FKNKLSL DF  V
Sbjct: 52  KAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALV 111

Query: 201 FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNS 380
           FKEFA RGDWQRSLRLFKYMQRQIWCKPNEHIYT+MIS+LGREGLL+K  EVF EMP   
Sbjct: 112 FKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQG 171

Query: 381 VTRSVYSYTAIINAYGRHGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGGYDWEGL 560
           V+RSV+SYTA+INAYGR+G+YE SLELL RMK E+I PS LTYNTV+N+CARGG DWEGL
Sbjct: 172 VSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGL 231

Query: 561 LSLFGE 578
           L LF E
Sbjct: 232 LGLFAE 237



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
 Frame = +3

Query: 81  YSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTH---VFKEFAARGDWQRSLRLF 251
           YS+ VET   KL  L     +   L    +  SL D T    + + +A  G  + ++ +F
Sbjct: 285 YSHLVETF-GKLRRLE---KVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVF 340

Query: 252 KYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTRSVYSYTAIINAYGR 431
             MQ    C PN + Y++++++ G+ G  +   ++F EM  ++      +Y  +I  +G 
Sbjct: 341 HQMQAA-GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGE 399

Query: 432 HGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGG 542
            G ++  + L   M  E I P   TY  ++ +C +GG
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGG 436


>ref|XP_002322139.1| predicted protein [Populus trichocarpa] gi|222869135|gb|EEF06266.1|
           predicted protein [Populus trichocarpa]
          Length = 866

 Score =  310 bits (795), Expect = 9e-83
 Identities = 150/186 (80%), Positives = 165/186 (88%)
 Frame = +3

Query: 21  KAKSKELILGNPSFTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTHV 200
           +AK KEL+LGNPS  VEKGKYSYDVETLINKLSSLPPRGSIARCLD FKNKLSL DF  V
Sbjct: 54  RAKPKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFKNKLSLNDFALV 113

Query: 201 FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNS 380
           FKEFA RGDWQRSLRLFK+MQRQIWCKPNEHIYT+MIS+LGREGLLEK  ++F EM  + 
Sbjct: 114 FKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHG 173

Query: 381 VTRSVYSYTAIINAYGRHGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGGYDWEGL 560
           V+RSV+SYTA+IN+YGR+GKYEVSLELL RMK ER+ PS LTYNTV+NSCARGG DWEGL
Sbjct: 174 VSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGL 233

Query: 561 LSLFGE 578
           L LF E
Sbjct: 234 LGLFAE 239



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 36/154 (23%), Positives = 80/154 (51%)
 Frame = +3

Query: 81  YSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTHVFKEFAARGDWQRSLRLFKYM 260
           Y+Y V+T   KL+ L     + + + +  N   ++ +  + + +A  G+ + +  +F+ M
Sbjct: 287 YTYLVDTF-GKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLM 345

Query: 261 QRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTRSVYSYTAIINAYGRHGK 440
           Q +  C PN   Y++++ + G+ G  ++  E+F EM +++      +Y  +I+ +G  G 
Sbjct: 346 Q-EAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGY 404

Query: 441 YEVSLELLGRMKTERIVPSSLTYNTVLNSCARGG 542
           ++  + L   M  E + P+  TY  ++ +C +GG
Sbjct: 405 FKEVVTLFHDMAEENVEPNMETYEGLIFACGKGG 438



 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 39/156 (25%), Positives = 69/156 (44%)
 Frame = +3

Query: 105 INKLSSLPPRGSIARCLDTFKNKLSLADFTHVFKEFAARGDWQRSLRLFKYMQRQIWCKP 284
           +N+   +P   +    +DTF     L   + + KE A+ G+                  P
Sbjct: 275 MNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGN-----------------VP 317

Query: 285 NEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTRSVYSYTAIINAYGRHGKYEVSLELL 464
               Y +++    R G +E A  VF  M       +  +Y+ ++  YG+HG+Y+   EL 
Sbjct: 318 EISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELF 377

Query: 465 GRMKTERIVPSSLTYNTVLNSCARGGYDWEGLLSLF 572
             MK     P + TYNT+++    GGY ++ +++LF
Sbjct: 378 LEMKVSNTEPDAATYNTLIDVFGEGGY-FKEVVTLF 412


>ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata] gi|297334836|gb|EFH65254.1| hypothetical protein
           ARALYDRAFT_476621 [Arabidopsis lyrata subsp. lyrata]
          Length = 863

 Score =  310 bits (794), Expect = 1e-82
 Identities = 149/186 (80%), Positives = 166/186 (89%)
 Frame = +3

Query: 21  KAKSKELILGNPSFTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTHV 200
           KAK+K+L+LGNPS +VEKGKYSYDVE+LINKLSSLPPRGSIARCLD FKNKLSL DF  V
Sbjct: 52  KAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALV 111

Query: 201 FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNS 380
           FKEFA RGDWQRSLRLFKYMQRQIWCKPNEHIYT+MIS+LGREGLL+K  EVF EMP   
Sbjct: 112 FKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQG 171

Query: 381 VTRSVYSYTAIINAYGRHGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGGYDWEGL 560
           V+RSV+SYTA+INAYGR+G+YE SLELL RMK ++I PS LTYNTV+N+CARGG DWEGL
Sbjct: 172 VSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGL 231

Query: 561 LSLFGE 578
           L LF E
Sbjct: 232 LGLFAE 237



 Score = 62.0 bits (149), Expect = 7e-08
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
 Frame = +3

Query: 81  YSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTH---VFKEFAARGDWQRSLRLF 251
           YS+ VET   KL  L     ++  L    +  SL D T    + + +A  G  + ++ +F
Sbjct: 285 YSHLVETF-GKLRRLE---KVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVF 340

Query: 252 KYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTRSVYSYTAIINAYGR 431
             MQ    C PN + Y++++++ G+ G  +   ++F EM  ++      +Y  +I  +G 
Sbjct: 341 HQMQAA-GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGE 399

Query: 432 HGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGG 542
            G ++  + L   M  E I P   TY  ++ +C +GG
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGG 436


>ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  305 bits (780), Expect = 5e-81
 Identities = 147/186 (79%), Positives = 162/186 (87%)
 Frame = +3

Query: 21  KAKSKELILGNPSFTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTHV 200
           +AK KEL+LGNPS TVEKGKYSYDVETLINKLSSLPPRGSIARCLD FKNKLSL DF  V
Sbjct: 57  RAKPKELVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFKNKLSLNDFALV 116

Query: 201 FKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNS 380
           FKEFA RGDWQRSLRLFKYMQRQIWCKPNEHIYT+MI +LGREGLLEK  E+F EMP + 
Sbjct: 117 FKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHG 176

Query: 381 VTRSVYSYTAIINAYGRHGKYEVSLELLGRMKTERIVPSSLTYNTVLNSCARGGYDWEGL 560
           V  SV+S+TA+INAYGR+G+Y+ SLELL RMK ER+ PS LTYNTV+NSCARGG DWE L
Sbjct: 177 VAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEEL 236

Query: 561 LSLFGE 578
           L LF +
Sbjct: 237 LGLFAQ 242



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 38/154 (24%), Positives = 79/154 (51%)
 Frame = +3

Query: 81  YSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLADFTHVFKEFAARGDWQRSLRLFKYM 260
           YSY VET   KL+ L     + + +++  +   +  +  + +  A  G  + ++ +F+ M
Sbjct: 290 YSYLVETF-GKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 348

Query: 261 QRQIWCKPNEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTRSVYSYTAIINAYGRHGK 440
           Q    C PN   Y++++++ GR G  +   ++F EM +++   +  +Y  +IN +G  G 
Sbjct: 349 QGA-GCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGY 407

Query: 441 YEVSLELLGRMKTERIVPSSLTYNTVLNSCARGG 542
           ++  + L   M  E + P+  TY  ++ +C +GG
Sbjct: 408 FKEVVTLFHDMVEENVEPNMETYEGLIFACGKGG 441



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/156 (23%), Positives = 73/156 (46%)
 Frame = +3

Query: 105 INKLSSLPPRGSIARCLDTFKNKLSLADFTHVFKEFAARGDWQRSLRLFKYMQRQIWCKP 284
           +N+   LP   + +  ++TF     L   + + KE  + G +                 P
Sbjct: 278 MNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSF-----------------P 320

Query: 285 NEHIYTLMISILGREGLLEKAHEVFAEMPLNSVTRSVYSYTAIINAYGRHGKYEVSLELL 464
           +   Y +++    + G +++A  VF +M       +  +Y+ ++N YGRHG+Y+   +L 
Sbjct: 321 DITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLF 380

Query: 465 GRMKTERIVPSSLTYNTVLNSCARGGYDWEGLLSLF 572
             MK     P++ TYN ++N    GGY ++ +++LF
Sbjct: 381 LEMKVSNTEPNAATYNILINVFGEGGY-FKEVVTLF 415