BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025801
         (441 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    82   3e-14
ref|XP_003576632.1| PREDICTED: putative ribonuclease H protein A...    82   4e-14
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...    80   1e-13
ref|XP_003572685.1| PREDICTED: uncharacterized protein LOC100826...    77   1e-12
gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold ...    77   1e-12

>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
 Frame = +2

Query: 14  GITQIRGSSVWKDVWQLQVPPRVKQFIWKCHHDILPTKNNLMRKGILVDPIRVLCNEKCE 193
           G + +    +WK +W+L +P RV+ F+WK   +I+PT+ NL R+G+++D +  LC +  E
Sbjct: 250 GPSLLHWDKLWKLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADE 309

Query: 194 SLSHLLLDCSFSCRLWYTTPWMLNTTGGPWRTFKELWIFLSNQLTACGRKDALS-QIACI 370
           S +H  + C  + ++W+ +P        P +T    W+     L+    K+ L+ Q+ C+
Sbjct: 310 SSNHRFMACPMTLQVWFASPLGFQP---PPQTDLNAWL-----LSWLSAKEPLAVQLFCV 361

Query: 371 -LWCLWKSRNGVVFENI 418
            LW +W  RN V+F  +
Sbjct: 362 CLWKIWFFRNQVIFNQV 378


>ref|XP_003576632.1| PREDICTED: putative ribonuclease H protein At1g65750-like
           [Brachypodium distachyon]
          Length = 475

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
 Frame = +2

Query: 44  WKDVWQLQVPPRVKQFIWKCHHDILPTKNNLMRKGILVDPIRVLCNEKCESLSHLLLDCS 223
           WK  W+   PPRVK F+W    D   T     R G+       LC++  E+++HLL+DC 
Sbjct: 335 WKLNWKSWAPPRVKFFLWLACQDRCWTAERRARHGLAHASRCSLCDQTMETMNHLLVDCP 394

Query: 224 FSCRLWYTTPWMLNTTGGPWRT---FKELWIFLSNQLTACGRKDALSQIACILWCLWKSR 394
           FS  +WY     + +TG P  T   F + W    +   +  RK   S I    W +WK R
Sbjct: 395 FSRSVWYEVLSWIRSTGAPPTTGVSFADWWQASVHSAPSVARKGTSSIIMLTAWWIWKHR 454

Query: 395 NGVVFENISASMENI 439
           N  VF+N + ++ ++
Sbjct: 455 NAAVFDNATPNIGSL 469


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 39/129 (30%), Positives = 64/129 (49%)
 Frame = +2

Query: 29   RGSSVWKDVWQLQVPPRVKQFIWKCHHDILPTKNNLMRKGILVDPIRVLCNEKCESLSHL 208
            R + +W+ VWQLQ PP++  F+W+     L  K  L  + I VD    +C +  ES++H 
Sbjct: 1040 RETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHA 1099

Query: 209  LLDCSFSCRLWYTTPWMLNTTGGPWRTFKELWIFLSNQLTACGRKDALSQIACILWCLWK 388
            L DC+F+  +W  + +       P  +F E   +L+   T    K+    +   +W  W 
Sbjct: 1100 LFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWLAKHAT----KEEFRTMCSFMWAGWF 1155

Query: 389  SRNGVVFEN 415
             RN ++FEN
Sbjct: 1156 CRNKLIFEN 1164


>ref|XP_003572685.1| PREDICTED: uncharacterized protein LOC100826565 [Brachypodium
            distachyon]
          Length = 831

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
 Frame = +2

Query: 35   SSVWKDVWQLQVPPRVKQFIWKCHHDILPTKNNLMRKGILVDPIRVLCNEKCESLSHLLL 214
            S  W+  W+   PPRVK FIW    D   T     R G+   P  +LC++   +++HL++
Sbjct: 665  SDTWRLNWKSWAPPRVKFFIWLACQDRCWTAERRARHGLSHAPRCLLCDQSMGTMNHLMV 724

Query: 215  DCSFSCRLWY-TTPWMLNTTGGP--WRTFKELWIFLSNQLTACGRKDALSQIACILWCLW 385
            DC FS  LW+    W+ +T   P     F + W    N   +  RK   S I      +W
Sbjct: 725  DCPFSRFLWHEVLSWIRSTAAPPTVGVLFADWWHATVNIAPSSARKGTASIIMLTARWIW 784

Query: 386  KSRNGVVFENISASMENI 439
            K RN  VF+N++ S+ ++
Sbjct: 785  KHRNAAVFDNVTPSIASL 802


>gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 519

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
 Frame = +2

Query: 26  IRGSSVWKDVWQLQVPPRVKQFIWKCHHDILPTKNNLMRKGILVDPIRVLCNEKCESLSH 205
           +R    W D+W+L+VPP++K F+W+    +LPT+N L  KG+      V C+   E + H
Sbjct: 162 LRRPGYWSDIWRLKVPPKIKNFMWRVCRGVLPTRNKLRDKGVQCPEACVNCSTTSEDVKH 221

Query: 206 LLLDCSFSCRLWYTTPWMLNTTGGPWRTFKELWIFLSNQLTACGRKDAL----------- 352
           L   C+F  ++W                  +LW  +   +       A+           
Sbjct: 222 LFCVCTFDVQVW---------------QLSDLWSEIQQAVIHFDTASAVIFDLLQRFTLE 266

Query: 353 -SQIACILWCLWKSRNGVVFENISAS 427
            SQI   +W LWK RN  V+EN + S
Sbjct: 267 QSQIFVTMWSLWKRRNLKVWENKNES 292