BLASTX nr result
ID: Lithospermum22_contig00025399
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00025399
(877 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 57 5e-11
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 44 4e-09
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 44 4e-09
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 44 4e-09
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 48 4e-08
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 56.6 bits (135), Expect(3) = 5e-11
Identities = 67/271 (24%), Positives = 102/271 (37%), Gaps = 76/271 (28%)
Frame = -1
Query: 724 QGDCLSPYLFLLIMELL-HLQIEEVLKD---------------KLLNTIDTIL------- 614
QGD LSPYLF++ ME L H+ ++V D LL D +L
Sbjct: 65 QGDPLSPYLFVICMERLSHIIADQVEADYWKPMRAGRYGPPISHLLFADDLLLFAEASIE 124
Query: 613 ---------KNFCKWTGQKISNDXXXXXXXXXXXTSVA*LQIQET-----QNLGKYLDFP 476
FC+ +GQKI+ + + IQ T +LGKYL
Sbjct: 125 QAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNSLGKYLGAN 184
Query: 475 LKVGKLPILDFNFILHKVGKKLQGLKANTLSLAGRKTL---------------------- 362
+ G+ FN I++K+ KL G K LSLAGR TL
Sbjct: 185 ITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSIPYYHMQYAKIPKTI 244
Query: 361 -----------IQSTTSA**GEHVLPMGLYCIP----*TGDKSPSLKTKGVWVMEKLSWR 227
+ ++ H++ + C+P G K P + + K+ W
Sbjct: 245 CDEIEKIQRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLGFKRPHHMNEA--FLMKMLWN 302
Query: 226 ILNEPHLKWCPILINNY--FNSSNQRLSNEP 140
++ +P WC +L + Y N N +S++P
Sbjct: 303 LIKQPDKLWCRVLYSKYGRNNDLNNNISSQP 333
Score = 30.4 bits (67), Expect(3) = 5e-11
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 837 VEWGCIKHCLNLFSFSNCISNIIMHRVSSSKMTVLING--KETVYP 706
+ W ++ CL F + + NII H +S+ ++ NG E+ YP
Sbjct: 14 LNWNFVEECLKECKFPSKLINIIHHCISTPSYKIMWNGDKSESFYP 59
Score = 26.2 bits (56), Expect(3) = 5e-11
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 128 RSVAKRWHIFKGGLFHCIRGGNLTNFWHENWL 33
+++ W FK + I G TNFW + W+
Sbjct: 340 KAIVGIWDDFKRHVIWQIGDGRSTNFWLDKWI 371
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 43.9 bits (102), Expect(2) = 4e-09
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = -1
Query: 523 LQIQETQNLGKYLDFPLKVGKLPILDFNFILHKVGKKLQGLKANTLSLAGRKTLIQST 350
LQ+ ++LG YL P+ ++ FN ++ K+ KL KA++L++AGR+ L+Q++
Sbjct: 1275 LQVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQAS 1332
Score = 43.5 bits (101), Expect(2) = 4e-09
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Frame = -3
Query: 359 PINNLSLIRRTCPSY-------GALLYPINWGQITKPKNKGGLGYGEAELEN---FE*TP 210
P++ + I +TC ++ L+ +NW +I KP+N+GGLG A N
Sbjct: 1347 PVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMA 1406
Query: 209 S*VVPHLDKXXXXXXQSKIIQRA-----------SENARSVAKRWHIFKGGLFHCIRGGN 63
+ ++DK + K ++ A S RS+ K + G + + G
Sbjct: 1407 WQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGR 1466
Query: 62 LTNFWHENWLGISSLCT 12
NFW++ W+G L +
Sbjct: 1467 KINFWNDWWVGDGPLAS 1483
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 43.9 bits (102), Expect(2) = 4e-09
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = -1
Query: 523 LQIQETQNLGKYLDFPLKVGKLPILDFNFILHKVGKKLQGLKANTLSLAGRKTLIQST 350
LQ+ ++LG YL P+ ++ FN ++ K+ KL KA++L++AGR+ L+Q++
Sbjct: 743 LQVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQAS 800
Score = 43.5 bits (101), Expect(2) = 4e-09
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Frame = -3
Query: 359 PINNLSLIRRTCPSY-------GALLYPINWGQITKPKNKGGLGYGEAELEN---FE*TP 210
P++ + I +TC ++ L+ +NW +I KP+N+GGLG A N
Sbjct: 815 PVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMA 874
Query: 209 S*VVPHLDKXXXXXXQSKIIQRA-----------SENARSVAKRWHIFKGGLFHCIRGGN 63
+ ++DK + K ++ A S RS+ K + G + + G
Sbjct: 875 WQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGR 934
Query: 62 LTNFWHENWLGISSLCT 12
NFW++ W+G L +
Sbjct: 935 KINFWNDWWVGDGPLAS 951
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 43.9 bits (102), Expect(2) = 4e-09
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = -1
Query: 523 LQIQETQNLGKYLDFPLKVGKLPILDFNFILHKVGKKLQGLKANTLSLAGRKTLIQST 350
LQ+ ++LG YL P+ ++ FN ++ K+ KL KA++L++AGR+ L+Q++
Sbjct: 743 LQVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQAS 800
Score = 43.5 bits (101), Expect(2) = 4e-09
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Frame = -3
Query: 359 PINNLSLIRRTCPSY-------GALLYPINWGQITKPKNKGGLGYGEAELEN---FE*TP 210
P++ + I +TC ++ L+ +NW +I KP+N+GGLG A N
Sbjct: 815 PVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMA 874
Query: 209 S*VVPHLDKXXXXXXQSKIIQRA-----------SENARSVAKRWHIFKGGLFHCIRGGN 63
+ ++DK + K ++ A S RS+ K + G + + G
Sbjct: 875 WQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGR 934
Query: 62 LTNFWHENWLGISSLCT 12
NFW++ W+G L +
Sbjct: 935 KINFWNDWWVGDGPLAS 951
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 47.8 bits (112), Expect(3) = 4e-08
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 37/182 (20%)
Frame = -1
Query: 724 QGDCLSPYLFLLIMELLHLQIEEVLKDKLLN----------------------------- 632
QGD LSP+LFL + ++L I ++ +D LL
Sbjct: 1244 QGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDSLFFLRATLQ 1303
Query: 631 ---TIDTILKNFCKWTGQKISNDXXXXXXXXXXXTSVA*L-----QIQETQNLGKYLDFP 476
T+ +L +C +GQ I+ + +A L QI + G YL P
Sbjct: 1304 NCETLSDLLHTYCIASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVSDPGTYLGLP 1363
Query: 475 LKVGKLPILDFNFILHKVGKKLQGLKANTLSLAGRKTLIQSTTSA**GEHVLPMGLYCIP 296
+ FI + +K++G K TLS AG++ LI++ +A PMG + P
Sbjct: 1364 TFWHRSKKKALGFIKDSILRKVKGWKQATLSQAGKEVLIKAVATA---IPAYPMGCFKFP 1420
Query: 295 *T 290
T
Sbjct: 1421 ST 1422
Score = 32.3 bits (72), Expect(3) = 4e-08
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 840 RVEWGCIKHCLNLFSFSNCISNIIMHRVSSSKMTVLINGK 721
RVEW ++ L F + ++M V++S ++VLINGK
Sbjct: 1192 RVEWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGK 1231
Score = 23.1 bits (48), Expect(3) = 4e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 293 NWGQITKPKNKGGLGYGEAE 234
+W + +PK GG+G+ E
Sbjct: 1448 SWDFLARPKKDGGMGFRNLE 1467