BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025373
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    51   2e-10
emb|CAB72467.1| putative protein [Arabidopsis thaliana]                51   7e-10
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    51   9e-10
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    47   3e-08
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    46   3e-08

>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 50.8 bits (120), Expect(3) = 2e-10
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -2

Query: 302 DQAMLDTVVSPEEIEIVFLSMKSGKAPGPDGLSIEFYKDSWSII 171
           D+ ML   VS EEI  V  SM + K+PGPDG + EFYK +W+II
Sbjct: 333 DKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNII 376



 Score = 36.6 bits (83), Expect(3) = 2e-10
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 120 FLSKCINNTVITLIPKLPNHQNMKNFRPI*C 28
           FL K IN+T++ LIPK    + MK++RPI C
Sbjct: 392 FLPKGINSTILALIPKKKEAKEMKDYRPISC 422



 Score = 21.9 bits (45), Expect(3) = 2e-10
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 166 GACVIEAIQSFFITGF 119
           GA  I AIQSFF  GF
Sbjct: 377 GAEFILAIQSFFAKGF 392


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 51.2 bits (121), Expect(2) = 7e-10
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = -2

Query: 293 MLDTVVSPEEIEIVFLSMKSGKAPGPDGLSIEFYKDSWSII 171
           ML  VVS EEI+ V  SM + K+PGPDG + EF+K+SW I+
Sbjct: 1   MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEIL 41



 Score = 37.0 bits (84), Expect(2) = 7e-10
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -1

Query: 126 LDFLSKCINNTVITLIPKLPNHQNMKNFRPI*C 28
           L FL K +N+T++ LIPK    + MK++RPI C
Sbjct: 55  LGFLPKGVNSTILALIPKKLESKEMKDYRPISC 87


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 50.8 bits (120), Expect(3) = 9e-10
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = -2

Query: 302 DQAMLDTVVSPEEIEIVFLSMKSGKAPGPDGLSIEFYKDSWSIIRGSV 159
           D  +L  VV+ EEI+ V  SM   K+PGPDG + EFYK SW II   V
Sbjct: 166 DHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEV 213



 Score = 34.7 bits (78), Expect(3) = 9e-10
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 120 FLSKCINNTVITLIPKLPNHQNMKNFRPI*C 28
           FL K +N+T++ LIPK    + +K++RPI C
Sbjct: 225 FLPKGVNSTILALIPKKKEAREIKDYRPISC 255



 Score = 21.6 bits (44), Expect(3) = 9e-10
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 157 VIEAIQSFFITGF 119
           VI AIQSFF  GF
Sbjct: 213 VIIAIQSFFAKGF 225


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1447

 Score = 46.6 bits (109), Expect(2) = 3e-08
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = -2

Query: 302 DQAMLDTVVSPEEIEIVFLSMKSGKAPGPDGLSIEFYKDSWSII 171
           +  +L  VV+ EEI+ V  SM + K+PGPDG + EF+K +W I+
Sbjct: 853 EHELLTRVVTAEEIKKVLFSMPNDKSPGPDGFTSEFFKATWEIL 896



 Score = 36.2 bits (82), Expect(2) = 3e-08
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -1

Query: 120  FLSKCINNTVITLIPKLPNHQNMKNFRPI*C 28
            FL K IN T++ LIPK    + MK++RPI C
Sbjct: 912  FLPKGINTTILALIPKKKEAKEMKDYRPISC 942


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1529

 Score = 45.8 bits (107), Expect(3) = 3e-08
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = -2

Query: 302 DQAMLDTVVSPEEIEIVFLSMKSGKAPGPDGLSIEFYKDSWSI 174
           DQ +L   V+ EEI+ V  +M + K+PGPDG + EF+K +WS+
Sbjct: 742 DQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSL 784



 Score = 33.1 bits (74), Expect(3) = 3e-08
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 120 FLSKCINNTVITLIPKLPNHQNMKNFRPI*C 28
           FL K +N T++ LIPK      MK++RPI C
Sbjct: 801 FLPKGLNATILALIPKKDEAIEMKDYRPISC 831



 Score = 22.7 bits (47), Expect(3) = 3e-08
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 166 GACVIEAIQSFFITGF 119
           G   I AIQSFF+ GF
Sbjct: 786 GPDFIAAIQSFFVKGF 801