BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025311
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi...    44   2e-06
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    44   1e-05

>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1156

 Score = 43.5 bits (101), Expect(2) = 2e-06
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +3

Query: 78  RVNTVVARQDPVLWHQRLGHPSAKIVQTLPFNFVSSDSL-NKTCDV 212
           +++T     D  LWHQRLGHPS  ++ +LP    SS S+ +++CDV
Sbjct: 78  KIHTAKVSSDQALWHQRLGHPSFSVLSSLPVLTSSSLSVGSRSCDV 123



 Score = 32.7 bits (73), Expect(2) = 2e-06
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1   DRFSRTLIGLGERMGRLYYLRAILT 75
           DRFSRTLIG GE    +YYL  + T
Sbjct: 52  DRFSRTLIGSGEERDGVYYLTDVAT 76


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 44.3 bits (103), Expect(2) = 1e-05
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 78  RVNTVVARQDPVLWHQRLGHPSAKIVQTLP-FNFVSSDSLNKTCDV 212
           +++T     D  LWHQRLGHPS  ++ +LP F+  SS   + +CDV
Sbjct: 517 KIHTANVDSDQALWHQRLGHPSFSVLSSLPLFSKTSSTVTSHSCDV 562



 Score = 29.6 bits (65), Expect(2) = 1e-05
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 1   DRFSRTLIGLGERMGRLYYL 60
           DR S+TLIG GE  G +YYL
Sbjct: 491 DRSSKTLIGSGEERGGVYYL 510