BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025240
         (1170 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314180.1| methyl binding domain protein [Populus trich...   116   1e-23
ref|XP_002299872.1| methyl binding domain protein [Populus trich...   112   2e-22
ref|XP_002864630.1| hypothetical protein ARALYDRAFT_919168 [Arab...   112   2e-22
ref|NP_200746.1| methyl-CPG-binding domain 6 protein [Arabidopsi...   109   1e-21
ref|XP_002532846.1| DNA binding protein, putative [Ricinus commu...   104   5e-20

>ref|XP_002314180.1| methyl binding domain protein [Populus trichocarpa]
           gi|222850588|gb|EEE88135.1| methyl binding domain
           protein [Populus trichocarpa]
          Length = 214

 Score =  116 bits (290), Expect = 1e-23
 Identities = 76/202 (37%), Positives = 104/202 (51%), Gaps = 14/202 (6%)
 Frame = -3

Query: 934 GGDVITPNNPTPLKPNESDLDDDVSITNPTPLKT-TRPGSDSKGS-------KSKRQPEE 779
           G D   PN    L+ N S +D +   T  T ++T TRP  ++KG+       ++KR+  E
Sbjct: 12  GTDQPVPNQDDALRQNGSVIDPN---TRTTAVETLTRP--NNKGNQQPVTPVRAKRRSSE 66

Query: 778 MAERPEWLPLDWRIEVRMRTSGATAGSYDRYYISP-SGRKFRSKTEVLHFLETGSTKKR- 605
                 WLP  W +E R+RTSGATAG+ D+YYI P SGRKFRSK +V ++LETG+ KK+ 
Sbjct: 67  TTIETSWLPPGWVVEDRIRTSGATAGTVDKYYIDPASGRKFRSKKDVQYYLETGTLKKKG 126

Query: 604 ----KADADGMPPASSXXXXXXXXXXKRGDFSGVDFDYRNPPQNVTWTLTNASHDIWTPA 437
                +DAD     S+                 ++FD  N P    W L NA  D W P 
Sbjct: 127 KLTENSDAD---TNSAGNLKVDKNKSGANTSFALNFDSFNVPDRTEWVLANAKEDTWIPF 183

Query: 436 VDEGVTPEHVKRTWDTAFSCIT 371
           +D    P + K  WD AF+ +T
Sbjct: 184 IDGKKVPLYDKEQWDFAFASLT 205


>ref|XP_002299872.1| methyl binding domain protein [Populus trichocarpa]
           gi|118483055|gb|ABK93437.1| unknown [Populus
           trichocarpa] gi|222847130|gb|EEE84677.1| methyl binding
           domain protein [Populus trichocarpa]
          Length = 214

 Score =  112 bits (280), Expect = 2e-22
 Identities = 69/188 (36%), Positives = 95/188 (50%), Gaps = 6/188 (3%)
 Frame = -3

Query: 916 PNNPTPLKPNESDLDDDVSITNPTPLKTTRPGSDSKGS---KSKRQPEEMAERPEWLPLD 746
           P    PL  N S +D +   T    L  T    + +     + KR+  E A    WLP  
Sbjct: 18  PKADDPLLQNGSSIDPNKHSTADETLNRTNDKGNQQPVTPVREKRRLSETAVDTSWLPPG 77

Query: 745 WRIEVRMRTSGATAGSYDRYYISP-SGRKFRSKTEVLHFLETGSTKKRKADADGMPPASS 569
           W +E R+RTSGATAG+ D+YYI P SGR+FRSK +V ++LETG+ KKR   A+ +   ++
Sbjct: 78  WVVEDRVRTSGATAGTRDKYYIEPVSGRRFRSKKDVQYYLETGTLKKRGKVAENVDADTN 137

Query: 568 XXXXXXXXXXKRGDFSGV--DFDYRNPPQNVTWTLTNASHDIWTPAVDEGVTPEHVKRTW 395
                     K G  +    +FD  N P    W LT A+ D WTP +D    P + K  W
Sbjct: 138 SAENSKSSKNKSGANTNFAWNFDSFNVPDRTEWFLTEANEDTWTPFIDGKKVPLYDKEQW 197

Query: 394 DTAFSCIT 371
           D  F+ +T
Sbjct: 198 DFTFASLT 205


>ref|XP_002864630.1| hypothetical protein ARALYDRAFT_919168 [Arabidopsis lyrata subsp.
           lyrata] gi|297310465|gb|EFH40889.1| hypothetical protein
           ARALYDRAFT_919168 [Arabidopsis lyrata subsp. lyrata]
          Length = 233

 Score =  112 bits (279), Expect = 2e-22
 Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
 Frame = -3

Query: 865 VSITNPTPLKTTRPGSDSKGSKSKRQPEEMAERPEWLPLDWRIEVRMRTSGATAGSYDRY 686
           + + N T      P S S  ++SK + +  A    WLP  WR+E ++RTSGATAGS D+Y
Sbjct: 53  IGMANGTDQVNPSPDSSSHQAESKSR-KRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKY 111

Query: 685 YISPS-GRKFRSKTEVLHFLETGSTKKRKADADGMPPASSXXXXXXXXXXKRGDFSG--- 518
           Y  P+ GRKFRS+TEVL++LE G++K+            S           R        
Sbjct: 112 YYEPNTGRKFRSRTEVLYYLEHGTSKRGGTKKVENTDFLSDHFEGQGSNRARRKAKEPPP 171

Query: 517 ----VDFDYRNPPQNVTWTLTNASHDIWTPAVDEGVTPEHVKRTWDTAFSCITELEVKK 353
               +DFD++NPP+ V+W++  A  + W P + +    + V+R W TAF+ IT     K
Sbjct: 172 PPPPLDFDFKNPPEKVSWSMAKAGEEAWIPIIGDVKVQDSVRRDWSTAFTFITNRNPSK 230


>ref|NP_200746.1| methyl-CPG-binding domain 6 protein [Arabidopsis thaliana]
           gi|75180469|sp|Q9LTJ1.1|MBD6_ARATH RecName:
           Full=Methyl-CpG-binding domain-containing protein 6;
           Short=AtMBD6; Short=MBD06; AltName:
           Full=Methyl-CpG-binding protein MBD6
           gi|8885544|dbj|BAA97474.1| unnamed protein product
           [Arabidopsis thaliana] gi|28416643|gb|AAO42852.1|
           At5g59380 [Arabidopsis thaliana]
           gi|110743343|dbj|BAE99559.1| hypothetical protein
           [Arabidopsis thaliana] gi|332009795|gb|AED97178.1|
           methyl-CPG-binding domain 6 protein [Arabidopsis
           thaliana]
          Length = 225

 Score =  109 bits (273), Expect = 1e-21
 Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 7/158 (4%)
 Frame = -3

Query: 805 SKSKRQPEEMAERPEWLPLDWRIEVRMRTSGATAGSYDRYYISP-SGRKFRSKTEVLHFL 629
           SKS+++    A    WLP  WR+E ++RTSGATAGS D+YY  P +GRKFRS+TEVL++L
Sbjct: 68  SKSRKRA---APGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYL 124

Query: 628 ETGSTKK--RKADADGMPP----ASSXXXXXXXXXXKRGDFSGVDFDYRNPPQNVTWTLT 467
           E G++K+  +KA+     P                        +DFD++NPP  V+W++ 
Sbjct: 125 EHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMA 184

Query: 466 NASHDIWTPAVDEGVTPEHVKRTWDTAFSCITELEVKK 353
           NA  + W P + +    + V+R W TAF+ IT     K
Sbjct: 185 NAGEEGWIPNIGDVKVQDSVRRDWSTAFTFITSRNPSK 222


>ref|XP_002532846.1| DNA binding protein, putative [Ricinus communis]
           gi|223527383|gb|EEF29524.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 234

 Score =  104 bits (259), Expect = 5e-20
 Identities = 66/192 (34%), Positives = 93/192 (48%), Gaps = 5/192 (2%)
 Frame = -3

Query: 952 THKPDSGGDVITPNNPTPLKPNESDLDDDVSITNPTPLKTTRPGSDSKGSKSKRQPEEMA 773
           T KP+   +V   NN    +  E+++   V  +  TPLK+ R    +        P   A
Sbjct: 43  TIKPNIDNNVSNNNNNNNYQQQEANVG--VEQSEATPLKSRRKVPVTMA------PAPSA 94

Query: 772 ERPEWLPLDWRIEVRMRTSGATAGSYDRYYISP-SGRKFRSKTEVLHFLETGSTKKRKAD 596
           +   WLP  W +E R+R SGATAG+ D+YYI P +GR+FRSK EV +FLETG+ KK K  
Sbjct: 95  DSANWLPPGWLVEDRVRASGATAGTVDKYYIEPVTGRRFRSKKEVQYFLETGTKKKTKRG 154

Query: 595 ADGMPP----ASSXXXXXXXXXXKRGDFSGVDFDYRNPPQNVTWTLTNASHDIWTPAVDE 428
            +          S          K       +FDY N P  + W L +A+ D WTP +  
Sbjct: 155 MENSEGDVNFTESPGSQKSKKASKNAKVQKRNFDYLNVPDRIEWALIDANQDAWTPFLGG 214

Query: 427 GVTPEHVKRTWD 392
               E+ ++ WD
Sbjct: 215 QKVAEYDRQNWD 226