BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025132
         (1346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containi...   725   0.0  
ref|XP_002306972.1| predicted protein [Populus trichocarpa] gi|2...   692   0.0  
ref|XP_002510663.1| pentatricopeptide repeat-containing protein,...   686   0.0  
ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containi...   677   0.0  
ref|XP_002865541.1| pentatricopeptide repeat-containing protein ...   676   0.0  

>ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
            mitochondrial [Vitis vinifera]
            gi|297745544|emb|CBI40709.3| unnamed protein product
            [Vitis vinifera]
          Length = 695

 Score =  725 bits (1871), Expect = 0.0
 Identities = 353/448 (78%), Positives = 395/448 (88%)
 Frame = +3

Query: 3    RDGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGD 182
            RDGF SDFVNYS +IQSLTR+N  D  +L+++Y E+E+D +ELDGQLLND+ VGFAK+GD
Sbjct: 212  RDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGD 271

Query: 183  VNRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNA 362
            VNRA+ FL ++QGNGLSPKTATLVAVI+ LGN GR          LKEGGL PRTRAYNA
Sbjct: 272  VNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNA 331

Query: 363  LLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANN 542
            LLKGYVK G+L+DAE +VSEMERSG SPDE TYSLLIDAY NAGRWESARIVLKEMEA+ 
Sbjct: 332  LLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASG 391

Query: 543  VQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAM 722
            V+PNSYVFSRILASYRDRG+WQ+SFQVL+EM+NSGV+PDR FYNVMIDTFGK NCLDHA+
Sbjct: 392  VRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHAL 451

Query: 723  AAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSF 902
            A F+RM++E + PD VTWNTLIDCHCK GHH KAEELF  MQE GC PCTTTYNIMINSF
Sbjct: 452  ATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSF 511

Query: 903  GRRERWDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSS 1082
            G +ERW++VK LL  MQSQGLL NV+TYTTLVDIYGQSGRF DAIECLEVMKS GLKPSS
Sbjct: 512  GEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSS 571

Query: 1083 TMYNALINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQY 1262
            TMYNALINAYAQRGLSEQA+ AFRVMR DGLKPS+L LNSLINAFGEDRRD +AF+VLQY
Sbjct: 572  TMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQY 631

Query: 1263 MKDNDLKPDVVTYTTLMKSLIRVEKYEK 1346
            MK+NDLKPDVVTYTTLMK+LIRVEK++K
Sbjct: 632  MKENDLKPDVVTYTTLMKALIRVEKFDK 659



 Score =  161 bits (408), Expect = 3e-37
 Identities = 94/375 (25%), Positives = 176/375 (46%)
 Frame = +3

Query: 90   ERLYDEMEADGVELDGQLLNDVTVGFAKAGDVNRALRFLGVMQGNGLSPKTATLVAVISE 269
            E +++E++  G+    +  N +  G+ K G +  A   +  M+ +G SP   T   +I  
Sbjct: 311  EAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDA 370

Query: 270  LGNMGRXXXXXXXXXXLKEGGLNPRTRAYNALLKGYVKIGALRDAEDVVSEMERSGVSPD 449
              N GR          ++  G+ P +  ++ +L  Y   G  + +  V+ EM  SGVSPD
Sbjct: 371  YANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPD 430

Query: 450  EFTYSLLIDAYGNAGRWESARIVLKEMEANNVQPNSYVFSRILASYRDRGEWQRSFQVLK 629
               Y+++ID +G     + A      M    VQP++  ++ ++  +   G   ++ ++ +
Sbjct: 431  RHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFE 490

Query: 630  EMKNSGVNPDRKFYNVMIDTFGKYNCLDHAMAAFERMKLEKIDPDTVTWNTLIDCHCKHG 809
             M+ SG +P    YN+MI++FG+    +       +M+ + +  + VT+ TL+D + + G
Sbjct: 491  AMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSG 550

Query: 810  HHAKAEELFHEMQEGGCLPCTTTYNIMINSFGRRERWDEVKGLLRNMQSQGLLPNVITYT 989
                A E    M+  G  P +T YN +IN++ +R   ++     R M++ GL P+V+   
Sbjct: 551  RFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLN 610

Query: 990  TLVDIYGQSGRFNDAIECLEVMKSEGLKPSSTMYNALINAYAQRGLSEQAVKAFRVMRGD 1169
            +L++ +G+  R  +A   L+ MK   LKP    Y  L+ A  +    ++    +  M   
Sbjct: 611  SLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLS 670

Query: 1170 GLKPSLLALNSLINA 1214
            G  P   A   L +A
Sbjct: 671  GCTPDRKARAMLRSA 685



 Score = 74.7 bits (182), Expect = 5e-11
 Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 37/252 (14%)
 Frame = +3

Query: 669  YNVMIDTFGKYNCLDHAMAAFERMK----------------------------------- 743
            YN +I    + + L+ A+    RM+                                   
Sbjct: 187  YNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAE 246

Query: 744  --LEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSFGRRER 917
               +KI+ D    N +I    K G   +A      +Q  G  P T T   +I + G   R
Sbjct: 247  IESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGR 306

Query: 918  WDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSSTMYNA 1097
             +E + +   ++  GL+P    Y  L+  Y ++G   DA   +  M+  G  P    Y+ 
Sbjct: 307  TEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSL 366

Query: 1098 LINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQYMKDND 1277
            LI+AYA  G  E A    + M   G++P+    + ++ ++ +  +   +F VL+ M+++ 
Sbjct: 367  LIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSG 426

Query: 1278 LKPDVVTYTTLM 1313
            + PD   Y  ++
Sbjct: 427  VSPDRHFYNVMI 438


>ref|XP_002306972.1| predicted protein [Populus trichocarpa] gi|222856421|gb|EEE93968.1|
            predicted protein [Populus trichocarpa]
          Length = 709

 Score =  692 bits (1785), Expect = 0.0
 Identities = 339/448 (75%), Positives = 389/448 (86%)
 Frame = +3

Query: 3    RDGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGD 182
            +DG+ SDFVNYSL+I+SL R N +D  +L++LY E+E D +ELD QL ND+ VGFAKAGD
Sbjct: 226  QDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGD 285

Query: 183  VNRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNA 362
            +++AL FLGV+QG+GLS KTATLVAVI  LGN GR          +++ GL PRTRAYNA
Sbjct: 286  LSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNA 345

Query: 363  LLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANN 542
            LL+GYVK G L+DAE VVSEMERSGVSP+E TYS LIDAYGNAGRWESARIVLKEMEA+N
Sbjct: 346  LLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASN 405

Query: 543  VQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAM 722
            VQPN+YVFSRIL+SYRD+GEWQ+SFQVL+EM+NSGV PDR FYNVMIDTFGK+NCLDHAM
Sbjct: 406  VQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAM 465

Query: 723  AAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSF 902
            A F+RM  E I+PDTVTWNTLIDCHC+ G H +AEELF EM EGG  PC TT+NIMINSF
Sbjct: 466  ATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSF 525

Query: 903  GRRERWDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSS 1082
            G +ERWD+VK LL +M+SQGL+PN +TYTTL+DIYG+SGRFNDAIECL+ MK+ GLKPSS
Sbjct: 526  GDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSS 585

Query: 1083 TMYNALINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQY 1262
            TMYNALINAYAQRGLSEQAV AFR MR DGLKPSLLALNSLINAFGEDRRD +AF VLQY
Sbjct: 586  TMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQY 645

Query: 1263 MKDNDLKPDVVTYTTLMKSLIRVEKYEK 1346
            MK+NDLKPDVVTYTTLMK+LIRVEK++K
Sbjct: 646  MKENDLKPDVVTYTTLMKALIRVEKFDK 673



 Score =  166 bits (419), Expect = 2e-38
 Identities = 97/375 (25%), Positives = 179/375 (47%)
 Frame = +3

Query: 90   ERLYDEMEADGVELDGQLLNDVTVGFAKAGDVNRALRFLGVMQGNGLSPKTATLVAVISE 269
            E +++EM  +G++   +  N +  G+ KAG +  A   +  M+ +G+SP   T   +I  
Sbjct: 325  EAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDA 384

Query: 270  LGNMGRXXXXXXXXXXLKEGGLNPRTRAYNALLKGYVKIGALRDAEDVVSEMERSGVSPD 449
             GN GR          ++   + P    ++ +L  Y   G  + +  V+ EME SGV PD
Sbjct: 385  YGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPD 444

Query: 450  EFTYSLLIDAYGNAGRWESARIVLKEMEANNVQPNSYVFSRILASYRDRGEWQRSFQVLK 629
               Y+++ID +G     + A      M +  ++P++  ++ ++  +   G+  R+ ++ +
Sbjct: 445  RVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFE 504

Query: 630  EMKNSGVNPDRKFYNVMIDTFGKYNCLDHAMAAFERMKLEKIDPDTVTWNTLIDCHCKHG 809
            EM   G +P    +N+MI++FG     D        M+ + + P++VT+ TLID + K G
Sbjct: 505  EMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSG 564

Query: 810  HHAKAEELFHEMQEGGCLPCTTTYNIMINSFGRRERWDEVKGLLRNMQSQGLLPNVITYT 989
                A E   +M+  G  P +T YN +IN++ +R   ++     R M+  GL P+++   
Sbjct: 565  RFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALN 624

Query: 990  TLVDIYGQSGRFNDAIECLEVMKSEGLKPSSTMYNALINAYAQRGLSEQAVKAFRVMRGD 1169
            +L++ +G+  R  +A   L+ MK   LKP    Y  L+ A  +    ++    +  M   
Sbjct: 625  SLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILS 684

Query: 1170 GLKPSLLALNSLINA 1214
            G  P   A   L +A
Sbjct: 685  GCTPDRKARAMLRSA 699



 Score =  135 bits (340), Expect = 2e-29
 Identities = 91/364 (25%), Positives = 167/364 (45%), Gaps = 37/364 (10%)
 Frame = +3

Query: 333  LNPRTRAYNALLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESAR 512
            L P T  YNAL+    +   L  A ++++ M + G   D   YSL+I +     R +SA 
Sbjct: 196  LTPLT--YNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAI 253

Query: 513  I--VLKEMEANNVQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMID 686
            +  + +E+E + ++ +  + + I+  +   G+  ++ + L  ++ SG++        +I 
Sbjct: 254  LQKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIW 313

Query: 687  TFGKYNCLDHAMAAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLP 866
              G       A A FE M+   + P T  +N L+  + K G    AE +  EM+  G  P
Sbjct: 314  ALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSP 373

Query: 867  CTTTYNIMINSFGRRERWDEVK-----------------------------------GLL 941
               TY+ +I+++G   RW+  +                                    +L
Sbjct: 374  NEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVL 433

Query: 942  RNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSSTMYNALINAYAQR 1121
            R M++ G+ P+ + Y  ++D +G+    + A+   + M SEG++P +  +N LI+ + + 
Sbjct: 434  REMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRA 493

Query: 1122 GLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQYMKDNDLKPDVVTY 1301
            G  ++A + F  M   G  P     N +IN+FG+  R  D   +L +M+   L P+ VTY
Sbjct: 494  GKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTY 553

Query: 1302 TTLM 1313
            TTL+
Sbjct: 554  TTLI 557


>ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223551364|gb|EEF52850.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 695

 Score =  686 bits (1770), Expect = 0.0
 Identities = 336/448 (75%), Positives = 384/448 (85%)
 Frame = +3

Query: 3    RDGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGD 182
            +DG+ SDFVNYSL+IQSL RSN ID  +L++LY E++ D +ELD QL ND+ VGFAKAGD
Sbjct: 212  QDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGD 271

Query: 183  VNRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNA 362
             N+A+ FLG++Q +GLSP+TATL+AVIS LG+ GR          +K+ GL P+TRAYN 
Sbjct: 272  PNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNG 331

Query: 363  LLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANN 542
            LLKGYVK G L+DAE +VSEMERSGVSPDE TYSLLIDAY NAGRWESARIVLKEMEANN
Sbjct: 332  LLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANN 391

Query: 543  VQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAM 722
            + PNSYVFSRILASYRDRGEWQ+SFQVLKEMKNSGV PDR FYNVMIDTFGK++CLDHAM
Sbjct: 392  IMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAM 451

Query: 723  AAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSF 902
              F++M  E I PDTVTWNTLIDCHCK   H +AEELF EM E G  PC TT+NIMINSF
Sbjct: 452  DTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSF 511

Query: 903  GRRERWDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSS 1082
            G +ERWD+VK L+ NM+S GLLPNV+TYTTL+DIYG+SGRF+DAIECLE MKS GLKPSS
Sbjct: 512  GEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSS 571

Query: 1083 TMYNALINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQY 1262
            TMYNALINAYAQ+GLSEQAV AFR+MR D LKPSLLALNSLINAFGEDRRD +AF+VL+Y
Sbjct: 572  TMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKY 631

Query: 1263 MKDNDLKPDVVTYTTLMKSLIRVEKYEK 1346
            MK+NDLKPDVVTYTTLMK+LIRV+K+ K
Sbjct: 632  MKENDLKPDVVTYTTLMKALIRVDKFNK 659



 Score =  144 bits (362), Expect = 7e-32
 Identities = 93/382 (24%), Positives = 171/382 (44%), Gaps = 37/382 (9%)
 Frame = +3

Query: 279  MGRXXXXXXXXXXLKEGGLNPRTRAYNALLKGYVKIGALRDAEDVVSEMERSGVSPDEFT 458
            +GR           ++  L+P T  YNAL+    +   L  A +++S M + G   D   
Sbjct: 164  LGRSEKLYEAFLLSQQQALSPLT--YNALINACARNNDLEKAINLISRMRQDGYPSDFVN 221

Query: 459  YSLLIDA-------------------------------------YGNAGRWESARIVLKE 527
            YSL+I +                                     +  AG    A   L  
Sbjct: 222  YSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGM 281

Query: 528  MEANNVQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNC 707
            ++A+ + P +     ++++  D G    +  + +EMK++G+ P  + YN ++  + K   
Sbjct: 282  VQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGM 341

Query: 708  LDHAMAAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNI 887
            L  A      M+   + PD  T++ LID +   G    A  +  EM+    +P +  ++ 
Sbjct: 342  LKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSR 401

Query: 888  MINSFGRRERWDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEG 1067
            ++ S+  R  W +   +L+ M++ G+ P+   Y  ++D +G+    + A++  + M SEG
Sbjct: 402  ILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEG 461

Query: 1068 LKPSSTMYNALINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAF 1247
            ++P +  +N LI+ + +  L E+A + F  M   G  P +   N +IN+FGE  R  D  
Sbjct: 462  IQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVK 521

Query: 1248 AVLQYMKDNDLKPDVVTYTTLM 1313
             ++  M+   L P+VVTYTTL+
Sbjct: 522  TLMGNMRSLGLLPNVVTYTTLI 543



 Score =  121 bits (303), Expect = 5e-25
 Identities = 69/324 (21%), Positives = 149/324 (45%)
 Frame = +3

Query: 3    RDGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGD 182
            R G   D   YSL+I + + +   +   +  +  EMEA+ +  +  + + +   +   G+
Sbjct: 354  RSGVSPDECTYSLLIDAYSNAGRWESARI--VLKEMEANNIMPNSYVFSRILASYRDRGE 411

Query: 183  VNRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNA 362
              ++ + L  M+ +G+ P       +I   G              +   G+ P T  +N 
Sbjct: 412  WQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNT 471

Query: 363  LLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANN 542
            L+  + K      AE++  EM   G SP   T++++I+++G   RW+  + ++  M +  
Sbjct: 472  LIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLG 531

Query: 543  VQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAM 722
            + PN   ++ ++  Y   G +  + + L++MK++G+ P    YN +I+ + +    + A+
Sbjct: 532  LLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAV 591

Query: 723  AAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSF 902
             AF  M+ + + P  +  N+LI+   +    A+A  +   M+E    P   TY  ++ + 
Sbjct: 592  NAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKAL 651

Query: 903  GRRERWDEVKGLLRNMQSQGLLPN 974
             R +++++V  +   M   G  P+
Sbjct: 652  IRVDKFNKVPSVYEEMILAGCTPD 675



 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 55/220 (25%), Positives = 94/220 (42%)
 Frame = +3

Query: 6    DGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGDV 185
            +G Q D V ++ +I    ++   +    E L++EM   G        N +   F +    
Sbjct: 460  EGIQPDTVTWNTLIDCHCKAELHERA--EELFEEMMEKGFSPCVTTFNIMINSFGEQERW 517

Query: 186  NRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNAL 365
            +     +G M+  GL P   T   +I   G  GR          +K  GL P +  YNAL
Sbjct: 518  DDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNAL 577

Query: 366  LKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANNV 545
            +  Y + G    A +    M    + P     + LI+A+G   R   A  VLK M+ N++
Sbjct: 578  INAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDL 637

Query: 546  QPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRK 665
            +P+   ++ ++ +     ++ +   V +EM  +G  PDRK
Sbjct: 638  KPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPDRK 677


>ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
            mitochondrial-like [Cucumis sativus]
            gi|449489420|ref|XP_004158306.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g42310,
            mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  677 bits (1748), Expect = 0.0
 Identities = 324/448 (72%), Positives = 386/448 (86%)
 Frame = +3

Query: 3    RDGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGD 182
            +DGFQSDF+NYSL+IQSLTR+N ID  +L++LY+E+E+D +ELDG LLND+ +GFAKAGD
Sbjct: 237  QDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGD 296

Query: 183  VNRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNA 362
             NRAL FL ++Q +GL+PKT+T VAVIS LGN GR          +KEGGL PR +A+NA
Sbjct: 297  PNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNA 356

Query: 363  LLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANN 542
            LLKGY + G+L++AE ++SEME+SG+SPDE TY LL+DAY N GRWESAR +LK+MEA N
Sbjct: 357  LLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARN 416

Query: 543  VQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAM 722
            VQPN+++FSRILASYRDRGEWQ++F+VL+EMKNS V PDR FYNVMIDTFGK+NCLDHAM
Sbjct: 417  VQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAM 476

Query: 723  AAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSF 902
              ++RM  E I+PD VTWNTLIDCH KHG+H +A ELF EMQE G LPC TTYNIMINS 
Sbjct: 477  ETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSL 536

Query: 903  GRRERWDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSS 1082
            G +E+WDEVK LL  MQSQGLLPNV+TYTTLVDIYG SGRFNDAI+CLE MKS GLKPS+
Sbjct: 537  GEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSA 596

Query: 1083 TMYNALINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQY 1262
            TMYNALINA+AQRGLSEQAV A+RVM  DGL+PSLLALNSLINAFGEDRRD +AF++LQY
Sbjct: 597  TMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQY 656

Query: 1263 MKDNDLKPDVVTYTTLMKSLIRVEKYEK 1346
            MK+ND+KPDVVTYTTLMK+LIRV+K++K
Sbjct: 657  MKENDVKPDVVTYTTLMKALIRVDKFDK 684



 Score =  145 bits (365), Expect = 3e-32
 Identities = 81/340 (23%), Positives = 167/340 (49%), Gaps = 2/340 (0%)
 Frame = +3

Query: 333  LNPRTRAYNALLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESAR 512
            L P T  YNAL+    +   L  A +++S M + G   D   YSL+I +     + +   
Sbjct: 207  LTPLT--YNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPL 264

Query: 513  I--VLKEMEANNVQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMID 686
            +  + +E+E++ ++ +  + + I+  +   G+  R+   L  ++ SG+NP    +  +I 
Sbjct: 265  LQKLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVIS 324

Query: 687  TFGKYNCLDHAMAAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLP 866
              G +   + A A FE MK   + P    +N L+  + + G   +AE +  EM++ G  P
Sbjct: 325  ALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSP 384

Query: 867  CTTTYNIMINSFGRRERWDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECL 1046
               TY ++++++    RW+  + LL+ M+++ + PN   ++ ++  Y   G +    E L
Sbjct: 385  DEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVL 444

Query: 1047 EVMKSEGLKPSSTMYNALINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGED 1226
              MK+  +KP    YN +I+ + +    + A++ +  M  +G++P ++  N+LI+   + 
Sbjct: 445  REMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKH 504

Query: 1227 RRDTDAFAVLQYMKDNDLKPDVVTYTTLMKSLIRVEKYEK 1346
                 A  + + M++    P   TY  ++ SL   EK+++
Sbjct: 505  GYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDE 544



 Score =  107 bits (268), Expect = 5e-21
 Identities = 66/324 (20%), Positives = 139/324 (42%)
 Frame = +3

Query: 3    RDGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGD 182
            + G   D   Y L++ +       +      L  +MEA  V+ +  + + +   +   G+
Sbjct: 379  KSGLSPDEHTYGLLVDAYANVGRWESA--RHLLKQMEARNVQPNTFIFSRILASYRDRGE 436

Query: 183  VNRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNA 362
              +    L  M+ + + P       +I   G              +   G+ P    +N 
Sbjct: 437  WQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNT 496

Query: 363  LLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANN 542
            L+  + K G    A ++  EM+  G  P   TY+++I++ G   +W+  +I+L +M++  
Sbjct: 497  LIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQG 556

Query: 543  VQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAM 722
            + PN   ++ ++  Y   G +  +   L+ MK++G+ P    YN +I+ F +    + A+
Sbjct: 557  LLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAV 616

Query: 723  AAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSF 902
             A+  M  + + P  +  N+LI+   +     +A  +   M+E    P   TY  ++ + 
Sbjct: 617  NAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKAL 676

Query: 903  GRRERWDEVKGLLRNMQSQGLLPN 974
             R +++D+V  +   M   G  P+
Sbjct: 677  IRVDKFDKVPAVYEEMILSGCTPD 700



 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 53/220 (24%), Positives = 92/220 (41%)
 Frame = +3

Query: 6    DGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGDV 185
            +G + D V ++ +I    +    D      L++EM+  G        N +     +    
Sbjct: 485  EGIEPDVVTWNTLIDCHRKHGYHDRAA--ELFEEMQERGYLPCPTTYNIMINSLGEQEKW 542

Query: 186  NRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNAL 365
            +     LG MQ  GL P   T   ++   G+ GR          +K  GL P    YNAL
Sbjct: 543  DEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNAL 602

Query: 366  LKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANNV 545
            +  + + G    A +    M   G+ P     + LI+A+G   R   A  +L+ M+ N+V
Sbjct: 603  INAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDV 662

Query: 546  QPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRK 665
            +P+   ++ ++ +     ++ +   V +EM  SG  PD K
Sbjct: 663  KPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDGK 702


>ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297311376|gb|EFH41800.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 711

 Score =  676 bits (1743), Expect = 0.0
 Identities = 330/448 (73%), Positives = 382/448 (85%)
 Frame = +3

Query: 3    RDGFQSDFVNYSLVIQSLTRSNSIDCGVLERLYDEMEADGVELDGQLLNDVTVGFAKAGD 182
            +DG+QSDFVNYSLVIQSLTR N ID  +L+RLY E+E D +ELD QL+ND+ +GFAK+GD
Sbjct: 227  QDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSGD 286

Query: 183  VNRALRFLGVMQGNGLSPKTATLVAVISELGNMGRXXXXXXXXXXLKEGGLNPRTRAYNA 362
             +RAL+ LG+ Q  GLS KTATLV++IS L N GR          L++ G+ PRT+AYNA
Sbjct: 287  PSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNA 346

Query: 363  LLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESARIVLKEMEANN 542
            LLKGYVK G L+DAE +VSEME+ GVSPDE TYSLLIDAY NAGRWESARIVLKEME  +
Sbjct: 347  LLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGD 406

Query: 543  VQPNSYVFSRILASYRDRGEWQRSFQVLKEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAM 722
            VQPNS+VFSR+LA YRDRGEWQ++FQVLKEMK+ GV PDR+FYNV+IDTFGK+NCLDHAM
Sbjct: 407  VQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 466

Query: 723  AAFERMKLEKIDPDTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSF 902
              F+RM  E I+PD VTWNTLIDCHCKHG H  AEE+F  M+  GCLPC TTYNIMINS+
Sbjct: 467  TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 526

Query: 903  GRRERWDEVKGLLRNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSS 1082
            G +ERWD++K LL  M+SQG+LPNV+T+TTLVD+YG+SGRFNDAIECLE MKS GLKPSS
Sbjct: 527  GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 586

Query: 1083 TMYNALINAYAQRGLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQY 1262
            TMYNALINAYAQRGLSEQAV AFRVM  DGLKPSLLALNSLINAFGEDRRD +AFAVLQY
Sbjct: 587  TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 646

Query: 1263 MKDNDLKPDVVTYTTLMKSLIRVEKYEK 1346
            MK+N +KPDVVTYTTLMK+LIRV+K++K
Sbjct: 647  MKENGVKPDVVTYTTLMKALIRVDKFQK 674



 Score =  132 bits (332), Expect = 2e-28
 Identities = 89/364 (24%), Positives = 163/364 (44%), Gaps = 37/364 (10%)
 Frame = +3

Query: 333  LNPRTRAYNALLKGYVKIGALRDAEDVVSEMERSGVSPDEFTYSLLIDAYGNAGRWESAR 512
            L P T  YNAL+    +   +  A +++S M + G   D   YSL+I +     + +S  
Sbjct: 197  LTPLT--YNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLTRCNKIDSVM 254

Query: 513  I--VLKEMEANNVQPNSYVFSRILASYRDRGEWQRSFQVL-------------------- 626
            +  + KE+E + ++ +  + + I+  +   G+  R+ Q+L                    
Sbjct: 255  LQRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIIS 314

Query: 627  ---------------KEMKNSGVNPDRKFYNVMIDTFGKYNCLDHAMAAFERMKLEKIDP 761
                           +E++ SG+ P  K YN ++  + K   L  A      M+   + P
Sbjct: 315  ALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSP 374

Query: 762  DTVTWNTLIDCHCKHGHHAKAEELFHEMQEGGCLPCTTTYNIMINSFGRRERWDEVKGLL 941
            D  T++ LID +   G    A  +  EM+ G   P +  ++ ++  +  R  W +   +L
Sbjct: 375  DEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVL 434

Query: 942  RNMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEVMKSEGLKPSSTMYNALINAYAQR 1121
            + M+S G+ P+   Y  ++D +G+    + A+   + M SEG++P    +N LI+ + + 
Sbjct: 435  KEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKH 494

Query: 1122 GLSEQAVKAFRVMRGDGLKPSLLALNSLINAFGEDRRDTDAFAVLQYMKDNDLKPDVVTY 1301
            G    A + F  M   G  P     N +IN++G+  R  D   +L  MK   + P+VVT+
Sbjct: 495  GRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH 554

Query: 1302 TTLM 1313
            TTL+
Sbjct: 555  TTLV 558