BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025097
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     182   2e-44
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   179   3e-43
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   179   3e-43
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...   171   6e-41
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   166   2e-39

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  182 bits (462), Expect = 2e-44
 Identities = 94/171 (54%), Positives = 114/171 (66%)
 Frame = -2

Query: 514  SDLLVNLWGYALLSAALTLNRCPTKSANKTPHELWFGKIPKLGFLKIWGCEAYVKRLTKD 335
            SDL ++ WGYAL +AALTLNR P+KS  KTP+E+W G+ P L FLKIWGCEAYVKRL  D
Sbjct: 618  SDLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSD 677

Query: 334  KVAPKSDKCYFIGYPKETVGYYFYLKHENKIFIAKTGVFLEKEYLSRRTRSNGVHLDEAQ 155
            K+ PKSDKC+ +GYPKET GYYFY + + K+F+A+ GVFLEKE+LSRR     VHL+E Q
Sbjct: 678  KLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQ 737

Query: 154  VDEVNVDASNAEASDAPQELAPSFIEDPVLDPQEVMEEPTLRRSNRDRYEP 2
                 V A+  E     Q +AP     PV+D       P  RRS R R  P
Sbjct: 738  ETPETVSAT-TEPQQEDQSVAP-----PVVD------TPAPRRSERSRRAP 776


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  179 bits (453), Expect = 3e-43
 Identities = 88/175 (50%), Positives = 114/175 (65%), Gaps = 4/175 (2%)
 Frame = -2

Query: 514 SDLLVNLWGYALLSAALTLNRCPTKSANKTPHELWFGKIPKLGFLKIWGCEAYVKRLTKD 335
           +DL    WGYAL ++A  LNRCP+KS  KTP+E+W GK+P L FLKIWGCE+Y KRL  D
Sbjct: 262 TDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKVPNLSFLKIWGCESYAKRLITD 321

Query: 334 KVAPKSDKCYFIGYPKETVGYYFYLKHENKIFIAKTGVFLEKEYLSRRTRSNGVHLDEAQ 155
           K+ PKSDKCYF+GYPKET GYYFY   +NK+F+ + G FLE+E+LS+ T  + V L+E +
Sbjct: 322 KLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAFLEREFLSKGTSGSKVLLEEVR 381

Query: 154 VDEVNVDASNAEASDAPQELAPSFIEDPVLDPQEVME----EPTLRRSNRDRYEP 2
                           PQ   P+  E+  LD + V+E    EP +RRS R R+EP
Sbjct: 382 ---------------EPQGDVPTSQEEHQLDLRRVVEPILVEPEVRRSERSRHEP 421


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  179 bits (453), Expect = 3e-43
 Identities = 88/171 (51%), Positives = 118/171 (69%)
 Frame = -2

Query: 514  SDLLVNLWGYALLSAALTLNRCPTKSANKTPHELWFGKIPKLGFLKIWGCEAYVKRLTKD 335
            ++LL++ WGYAL +AA TLNR P+KS +KTP+E+W GK P L FLKIWGCE YVKRL  D
Sbjct: 1094 TNLLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 1153

Query: 334  KVAPKSDKCYFIGYPKETVGYYFYLKHENKIFIAKTGVFLEKEYLSRRTRSNGVHLDEAQ 155
            K+ PKS+KC+F+GYPKET GYY Y + E K+F+A+ GVFL+KE++SR+   + V L+E Q
Sbjct: 1154 KLTPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFISRKDSGSIVRLEEIQ 1213

Query: 154  VDEVNVDASNAEASDAPQELAPSFIEDPVLDPQEVMEEPTLRRSNRDRYEP 2
                N   S  +   A Q++    +E  V++P  V+E P  RRS R R  P
Sbjct: 1214 ETPENASTS-TQPQQAEQDVVQQ-VEQVVVEP--VVEAPASRRSERIRRTP 1260


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 932

 Score =  171 bits (433), Expect = 6e-41
 Identities = 83/166 (50%), Positives = 115/166 (69%)
 Frame = -2

Query: 514 SDLLVNLWGYALLSAALTLNRCPTKSANKTPHELWFGKIPKLGFLKIWGCEAYVKRLTKD 335
           +DL ++ WGYAL +AA TLNR P+KS +KTP+E+W GK P L FLKIWGCE YVKRL  D
Sbjct: 289 TDLPLSFWGYALETAAFTLNRVPSKSLDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 348

Query: 334 KVAPKSDKCYFIGYPKETVGYYFYLKHENKIFIAKTGVFLEKEYLSRRTRSNGVHLDEAQ 155
           K+ PKSDK +F+GYPKET GYYFY + E+K+F+A+  VFLEKE++S  T+ +G+ +   +
Sbjct: 349 KLTPKSDKYFFVGYPKETKGYYFYNREEDKVFVARHDVFLEKEFIS--TKDSGIMVRLEE 406

Query: 154 VDEVNVDASNAEASDAPQELAPSFIEDPVLDPQEVMEEPTLRRSNR 17
           + E   +AS +      ++     +E  V++P  V+E P  RRS R
Sbjct: 407 IQETPKNASTSTQPQQDEQDVVQQVEQVVVEP--VVEAPASRRSER 450


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  166 bits (420), Expect = 2e-39
 Identities = 83/173 (47%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
 Frame = -2

Query: 514 SDLLVNLWGYALLSAALTLNRCPTKSANKTPHELWFGKIPKLGFLKIWGCEAYVKRLTKD 335
           +DL ++ WGYAL +A  T+NR P+KS +KTP+E+W GK P L FLKIWGCE YVKRL  D
Sbjct: 167 TDLPLSFWGYALETAVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 226

Query: 334 KVAP--KSDKCYFIGYPKETVGYYFYLKHENKIFIAKTGVFLEKEYLSRRTRSNGVHLDE 161
           K+ P  KSDKC+F+GYPKET GYYFY + E K+F+A+ GVFLEK+++SR+        D 
Sbjct: 227 KLTPKSKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRK--------DS 278

Query: 160 AQVDEVNVDASNAEASDAPQELAPSFIEDPVLDPQEVMEEPTLRRSNRDRYEP 2
             ++     +++ +   A Q++    +E  V++P  V+E P  RRS R R  P
Sbjct: 279 GSMETPENASTSTQPQQAEQDVVQQ-VEQVVVEP--VVEAPASRRSERIRRTP 328