BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00025025
         (564 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABI34321.1| RNase H family protein [Solanum demissum]               60   2e-07
gb|ABA97040.1| retrotransposon protein, putative, unclassified [...    60   3e-07
ref|NP_001045287.1| Os01g0930300 [Oryza sativa Japonica Group] g...    60   3e-07
emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulga...    56   5e-06

>gb|ABI34321.1| RNase H family protein [Solanum demissum]
          Length = 945

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
 Frame = +3

Query: 75   WTLAVNTKGH--IRQIIPMVIIWALWEARNQSKHDGTTYTFHKVM-SRVMVTTTYICKSC 245
            W +  +   H  I   +P++I W +W+ R   K+      +++ M + V        +  
Sbjct: 657  WNVQTHNSIHNVIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMENHVWWNLKMSLRMT 716

Query: 246  LISYK---HWKGDVTMVEHFQAQILVPPPRALSVVTWAKPSIGVLKLNVDGSYGLSHSAA 416
              S++    W+  +  VE  +     P P+   +V W  P+I  +K+N DGS+   ++  
Sbjct: 717  FPSFEIGNSWRDLLNKVESLR-----PYPK-WKIVHWNTPNINCVKINTDGSFSSGNAGL 770

Query: 417  GGVLRDSNGDLIMAFSLTTHPSSPLEAEVDAA---LNWCVANNFTLLQVETD 563
            G ++RD    +IMAFS+ +  SS   AE  AA   + WC+   F    +E D
Sbjct: 771  GWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELD 822


>gb|ABA97040.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1913

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 56/167 (33%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
 Frame = +3

Query: 90   NTKGHIRQIIPMVIIWALWEARNQSKHDGTTYTFHKVMSRVMVTTTYI---CKSCLISYK 260
            NT    R ++ M++ W +W  RN+  H        KV   + V+  ++   C S L   +
Sbjct: 1710 NTPAEERMMLCMML-WRIWFVRNELYHG-------KVPPPIAVSKRFLESYCSSLLEIKQ 1761

Query: 261  HWKGDVTMVEHFQAQILVPPPRALSVVT---------WAKPSIGVLKLNVDGSYGLSHSA 413
            H   DV   +H   Q    P R  S            W KP +G +KLNVDGSY  S+S+
Sbjct: 1762 HPHADVVRGKHVVQQ----PTRMRSEANHLRRVVPARWEKPQMGWMKLNVDGSYD-SNSS 1816

Query: 414  AGG---VLRDSNGDLIM-AFSLTTHPSSPLEAE-------VDAALNW 521
             GG   VLRDS G +I  A       SSPLE+E       ++ AL W
Sbjct: 1817 KGGIGVVLRDSVGTVIFSACGFLERCSSPLESELLACKEGINLALQW 1863


>ref|NP_001045287.1| Os01g0930300 [Oryza sativa Japonica Group]
           gi|113534818|dbj|BAF07201.1| Os01g0930300 [Oryza sativa
           Japonica Group]
          Length = 322

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
 Frame = +3

Query: 123 MVIIWALWEARNQSKHDGTTYTFHKVMSRVMVTTTYICKSCLISYKHWKGDVTMVEHF-Q 299
           M+++W +W  RN   H G      +V  R +++      S L   +H   ++   +H  Q
Sbjct: 89  MMLLWRIWYVRNGITH-GKAAIPVEVSQRFIIS---YMASLLEIRQHPNANLIKGKHVVQ 144

Query: 300 AQILVPPPR----ALSVVTWAKPSIGVLKLNVDGSYGLS--HSAAGGVLRDSNGDLIMAF 461
               +P PR    +    +W +P  G +KLNVDGSY  S      G VLRDS+G+LI A 
Sbjct: 145 YGSSMPLPRQCKPSAESSSWIRPQEGWMKLNVDGSYYPSDGKGGTGAVLRDSSGNLIFAA 204

Query: 462 SLTTH-PSSPLEAE-VDAALNWCVANNFTLLQ--VETD 563
               H P+S LEAE VD      +A  +TLL   VETD
Sbjct: 205 CGVLHRPASALEAEMVDCREGISMALQWTLLPIIVETD 242


>emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
 Frame = +3

Query: 126  VIIWALWEARNQSKHDGTTYTFHKVMSRVMVTTTYICKSCLISYKHWKGDVTMVEHFQA- 302
            +IIW +W+ RN     G + + +K+   V++   +  K    ++ +    V ++ H Q  
Sbjct: 1159 IIIWTIWKERNARIFRGISCSSNKLQDLVIIRLMWWIKGWGEAFPY--SIVEVLRHPQCL 1216

Query: 303  --QILVPPPRALSV----VTWAKPSIGVLKLNVDGSYGLSHSAAGGVLRDSNGDLIMAFS 464
                L   P A +V    + W+ P+ GV+K NVD S     SA GGVLR+S G  +  FS
Sbjct: 1217 SWDYLKAAPAATAVSVDGMLWSPPNDGVMKWNVDASVNAGRSAIGGVLRNSQGIFVCVFS 1276