BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00024955
         (1576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   110   8e-40
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   126   4e-35
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   152   3e-34
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   146   1e-32
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   145   2e-32

>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  110 bits (276), Expect(3) = 8e-40
 Identities = 61/206 (29%), Positives = 102/206 (49%)
 Frame = +2

Query: 2    DMFNELLNHRALHSEFTFHPKCKELGIANVCFADDTFILYGAFGKTIEIVNNALKDFSEW 181
            ++ + LL ++       +HPK  E+ I+++ FADD  I Y     ++  + + L+ F   
Sbjct: 665  EILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNL 724

Query: 182  YGLKPNLDKSTMYIARLELSRAQGLSSKMGIAMGSLPVKYRGMTLITKQLTYGDCRPLNE 361
             GL+ N +KS +Y A LE +  +   +  G   G+ P +Y G+ L+ ++L   D   L +
Sbjct: 725  SGLEMNTEKSAVYTAGLEDTDKEDTLA-FGFVNGTFPFRYLGLPLLHRKLRRSDYSQLID 783

Query: 362  GITKKIEEWGNHHLSFAGMFVLINSVVFGKENYWCQSIYLHVVFIKKIEQIVRCFLWKGE 541
             I  +   W    LSFAG   LI+SV++   N+W  S  L    +K IEQ+   FLW  +
Sbjct: 784  KIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGND 843

Query: 542  AHGSYMPKVSWKNVAMGEKRRWIGYK 619
                   KVSW+N  + +    +G +
Sbjct: 844  ITRRGDIKVSWQNSCLPKAEGGLGLR 869



 Score = 60.1 bits (144), Expect(3) = 8e-40
 Identities = 28/65 (43%), Positives = 39/65 (60%)
 Frame = +3

Query: 594  KKEGGLGIKDLRIWNQACMAYHMWDLCNRKESLCVRWIATYRLKGVSFWDVEAKSTDSWG 773
            K EGGLG+++   WN+      +W L  R++SL V W    RL+ V+FW+ EA S  SW 
Sbjct: 861  KAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWI 920

Query: 774  WKQML 788
            WK +L
Sbjct: 921  WKAIL 925



 Score = 41.6 bits (96), Expect(3) = 8e-40
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
 Frame = +1

Query: 811  RFMSNVVGDGKSTCFWYDSWHRMGVLVDQFTGGARNLISVSDDTSMADAINAGRW--PTR 984
            RF+   VG+G+   +WYD W  +G L++        L  + +   + +A ++  W  P+ 
Sbjct: 933  RFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSA 992

Query: 985  RRLTEEFHPFLQDL-----PQLNDVKDIVAW---NGCGNKVKTTNNWGSLCSIKPKPPCV 1140
            R            L     P  +  +D   W           +   W  L          
Sbjct: 993  RTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWA 1052

Query: 1141 DLIWFKSHIPRHEF 1182
              +W+K  IP++ F
Sbjct: 1053 AAVWYKGCIPKYAF 1066


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  126 bits (317), Expect(2) = 4e-35
 Identities = 61/177 (34%), Positives = 100/177 (56%)
 Frame = +2

Query: 44   EFTFHPKCKELGIANVCFADDTFILYGAFGKTIEIVNNALKDFSEWYGLKPNLDKSTMYI 223
            EF FHPKC+ + + ++ FADD  +   A   +I  +  A   FS+  GL+ +++KS +Y 
Sbjct: 674  EFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYF 733

Query: 224  ARLELSRAQGLSSKMGIAMGSLPVKYRGMTLITKQLTYGDCRPLNEGITKKIEEWGNHHL 403
              +    A+ L+ ++ + +GSLP +Y G+ L +K+L +  C+PL + IT + + W  H L
Sbjct: 734  GGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLL 793

Query: 404  SFAGMFVLINSVVFGKENYWCQSIYLHVVFIKKIEQIVRCFLWKGEAHGSYMPKVSW 574
            S+AG   L+ ++++  +NYW Q   L    IK +E   R FLW G    SY   V+W
Sbjct: 794  SYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAW 850



 Score = 49.7 bits (117), Expect(2) = 4e-35
 Identities = 26/89 (29%), Positives = 46/89 (51%)
 Frame = +3

Query: 567  LAGRMLQWGKKEGGLGIKDLRIWNQACMAYHMWDLCNRKESLCVRWIATYRLKGVSFWDV 746
            +A   LQ  K  GGL + ++ +WN+A +   +W +  +++ L VRW+  Y +K  +  +V
Sbjct: 848  VAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENV 907

Query: 747  EAKSTDSWGWKQMLHKHGRSNKVYEQCGG 833
               S  SW    +L K   S ++  + GG
Sbjct: 908  TVSSNTSW----ILRKIFESRELLTRTGG 932


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  152 bits (383), Expect = 3e-34
 Identities = 74/202 (36%), Positives = 121/202 (59%)
 Frame = +2

Query: 2    DMFNELLNHRALHSEFTFHPKCKELGIANVCFADDTFILYGAFGKTIEIVNNALKDFSEW 181
            D+ +++L+      +F +HPKC+ +G+ ++ FADD  IL     ++I+ +   L +F++W
Sbjct: 560  DVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKW 619

Query: 182  YGLKPNLDKSTMYIARLELSRAQGLSSKMGIAMGSLPVKYRGMTLITKQLTYGDCRPLNE 361
             GLK +++KSTMY+A ++ S  Q +  K    +G LPV+Y G+ L++K+LT  DC PL E
Sbjct: 620  SGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIE 679

Query: 362  GITKKIEEWGNHHLSFAGMFVLINSVVFGKENYWCQSIYLHVVFIKKIEQIVRCFLWKGE 541
             + KKIE W +  LSFAG   LI+S ++   N+W  +  L    I++I+++   FLW G 
Sbjct: 680  QLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSGT 739

Query: 542  AHGSYMPKVSWKNVAMGEKRRW 607
               S   KVSW+ +   +K  W
Sbjct: 740  ELSSNKAKVSWEAICKPKKEAW 761


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  146 bits (369), Expect = 1e-32
 Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 1/211 (0%)
 Frame = +2

Query: 2    DMFNELLNHRALHSEFTFHPKCKELGIANVCFADDTFILYGAFGKTIEIVNNALKDFSEW 181
            ++ + +++  A+H    +HPKC+++G+ ++CFADD  +       +IE V N  K+F+  
Sbjct: 969  NVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGR 1028

Query: 182  YGLKPNLDKSTMYIARLELS-RAQGLSSKMGIAMGSLPVKYRGMTLITKQLTYGDCRPLN 358
             GL+ +L+KST+Y+A +  S R Q LSS    A G LPV+Y G+ L+TKQ+T  D  PL 
Sbjct: 1029 SGLQISLEKSTIYLAGVSASDRVQTLSS-FPFANGQLPVRYLGLPLLTKQMTTADYSPLI 1087

Query: 359  EGITKKIEEWGNHHLSFAGMFVLINSVVFGKENYWCQSIYLHVVFIKKIEQIVRCFLWKG 538
            E +  KI  W    LS+AG   L+NSV+    N+W  +  L    I++IE++   FLW G
Sbjct: 1088 EAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSG 1147

Query: 539  EAHGSYMPKVSWKNVAMGEKRRWIGYKRLED 631
                    K++W ++   +K   +G K L +
Sbjct: 1148 PVLNPKKAKIAWSSICQPKKEGGLGIKSLAE 1178



 Score = 55.1 bits (131), Expect(2) = 3e-11
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
 Frame = +3

Query: 498  KRLSRL*DVFYGKGKLMALICQRLAGRMLQWGKKEGGLGIKDLRIWNQACMAYHMWDLCN 677
            + + +L   F   G ++     ++A   +   KKEGGLGIK L   N+      +W L +
Sbjct: 1134 REIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLS 1193

Query: 678  RKESLCVRWIATYRLKGVSFWDV-EAKSTDSWGWKQML 788
             + SL V WI T+ ++  +FW   E  S  SW WK++L
Sbjct: 1194 TQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLL 1231



 Score = 40.8 bits (94), Expect(2) = 3e-11
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
 Frame = +1

Query: 829  VGDGKSTCFWYDSWHRMGVLVDQFTGGARNL-ISVSDDTSMADAINAGRWPTRR-----R 990
            V +G ST FWYD W  +G L+D  TG  R + + +  +T++   +   +    R     R
Sbjct: 1245 VRNGSSTSFWYDHWSHLGRLLD-ITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNR 1303

Query: 991  LTEEFHPFLQDLPQLNDVKDIVAW----NGCGNKVKTTNNWGSLCSIKPKPPCVDLIWFK 1158
            +  E     Q   +     DI  W    N    +  T   W ++ + +P+      +WF 
Sbjct: 1304 INAEIQRLQQQEREAG--PDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFP 1361

Query: 1159 SHIPRHEFVCYM 1194
               P++ F+ ++
Sbjct: 1362 YSTPKYSFLLWL 1373


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  145 bits (367), Expect = 2e-32
 Identities = 70/210 (33%), Positives = 116/210 (55%)
 Frame = +2

Query: 2    DMFNELLNHRALHSEFTFHPKCKELGIANVCFADDTFILYGAFGKTIEIVNNALKDFSEW 181
            ++ + +L+  A+   F +HP+C+ +G+ ++CFADD  +       ++E V    KDF+ +
Sbjct: 927  NVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAF 986

Query: 182  YGLKPNLDKSTMYIARLELSRAQGLSSKMGIAMGSLPVKYRGMTLITKQLTYGDCRPLNE 361
             GL  +L+KST+++A +       + ++     GSLPV+Y G+ L+TK++T  DC PL E
Sbjct: 987  SGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLE 1046

Query: 362  GITKKIEEWGNHHLSFAGMFVLINSVVFGKENYWCQSIYLHVVFIKKIEQIVRCFLWKGE 541
             I  +I  W N  LS+AG   L+NSV+     +W  +  L    I++IEQI   FLW G 
Sbjct: 1047 KIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGT 1106

Query: 542  AHGSYMPKVSWKNVAMGEKRRWIGYKRLED 631
                +  KV+W +V   +    +G + L D
Sbjct: 1107 DLNPHKAKVAWHDVCKPKSEGGLGLRSLVD 1136