BLASTX nr result

ID: Lithospermum22_contig00024569 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00024569
         (397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282574.1| PREDICTED: protein TIC 40, chloroplastic [Vi...    82   4e-14
ref|NP_197165.1| hydroxyproline-rich glycoprotein family protein...    79   4e-13
ref|XP_002871727.1| hypothetical protein ARALYDRAFT_488521 [Arab...    77   1e-12
ref|XP_002305876.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|XP_004171923.1| PREDICTED: protein TIC 40, chloroplastic-lik...    73   3e-11

>ref|XP_002282574.1| PREDICTED: protein TIC 40, chloroplastic [Vitis vinifera]
           gi|296089465|emb|CBI39284.3| unnamed protein product
           [Vitis vinifera]
          Length = 436

 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 44/59 (74%), Positives = 49/59 (83%)
 Frame = -2

Query: 177 SEAFASIFSSGSQETSSAVGVNPQLPVPQSSSNVGSPLFWVGVGVGLSAVFSWVASSLK 1
           +E FASI SS SQ TSS VGVNPQ   P  SSN+GSPLFW+GVGVGLSA+FSWVAS+LK
Sbjct: 66  TECFASI-SSSSQGTSS-VGVNPQFSPPPPSSNIGSPLFWIGVGVGLSALFSWVASNLK 122


>ref|NP_197165.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis
           thaliana] gi|75309208|sp|Q9FMD5.1|TIC40_ARATH RecName:
           Full=Protein TIC 40, chloroplastic; AltName:
           Full=Protein PIGMENT DEFECTIVE EMBRYO 120; AltName:
           Full=Translocon at the inner envelope membrane of
           chloroplasts 40; Short=AtTIC40; Flags: Precursor
           gi|16226313|gb|AAL16131.1|AF428299_1 AT5g16620/MTG13_6
           [Arabidopsis thaliana] gi|10176971|dbj|BAB10189.1|
           translocon Tic40-like protein [Arabidopsis thaliana]
           gi|20260222|gb|AAM13009.1| translocon Tic40-like protein
           [Arabidopsis thaliana] gi|30387547|gb|AAP31939.1|
           At5g16620 [Arabidopsis thaliana]
           gi|332004935|gb|AED92318.1| hydroxyproline-rich
           glycoprotein family protein [Arabidopsis thaliana]
          Length = 447

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 40/68 (58%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
 Frame = -2

Query: 201 KIVIGRERSEAFASIFSSGSQETSSAVGVNPQLPVPQ-SSSNVGSPLFWVGVGVGLSAVF 25
           +IV+ ++RS+AFASIFSS   + +++V  +P +PVP  SSS +GSPLFW+GVGVGLSA+F
Sbjct: 64  EIVVVKQRSKAFASIFSSSRDQQTTSVA-SPSVPVPPPSSSTIGSPLFWIGVGVGLSALF 122

Query: 24  SWVASSLK 1
           S+V S+LK
Sbjct: 123 SYVTSNLK 130


>ref|XP_002871727.1| hypothetical protein ARALYDRAFT_488521 [Arabidopsis lyrata subsp.
           lyrata] gi|297317564|gb|EFH47986.1| hypothetical protein
           ARALYDRAFT_488521 [Arabidopsis lyrata subsp. lyrata]
          Length = 447

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 40/68 (58%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
 Frame = -2

Query: 201 KIVIGRERSEAFASIFSSGSQETSSAVGVNPQLPVPQ-SSSNVGSPLFWVGVGVGLSAVF 25
           +IV+ ++RS+AFASIFSS   + +++V  +P +PVP  SSS +GSPLFW+GVGVGLSA+F
Sbjct: 64  EIVVVKQRSKAFASIFSSSRDQQTTSVA-SPSVPVPPPSSSTIGSPLFWIGVGVGLSALF 122

Query: 24  SWVASSLK 1
           S V S+LK
Sbjct: 123 SLVTSNLK 130


>ref|XP_002305876.1| predicted protein [Populus trichocarpa] gi|222848840|gb|EEE86387.1|
           predicted protein [Populus trichocarpa]
          Length = 429

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 41/63 (65%), Positives = 49/63 (77%)
 Frame = -2

Query: 189 GRERSEAFASIFSSGSQETSSAVGVNPQLPVPQSSSNVGSPLFWVGVGVGLSAVFSWVAS 10
           G+  SE FASI SS  ++T+S VGVNPQ PV    S +GSPLFWVGVGVGLSA+FSWVA+
Sbjct: 67  GKLGSEYFASISSSSGKQTAS-VGVNPQ-PVSPPPSQIGSPLFWVGVGVGLSAIFSWVAT 124

Query: 9   SLK 1
            +K
Sbjct: 125 RVK 127


>ref|XP_004171923.1| PREDICTED: protein TIC 40, chloroplastic-like, partial [Cucumis
           sativus]
          Length = 304

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = -2

Query: 177 SEAFASIFSSGSQETSSAVGVNPQLPVPQSSSNVGSPLFWVGVGVGLSAVFSWVASSLK 1
           +E FA++ SS +   SS+VGV P + +P  SS VGSPLFWVGVGVGLSA+F+WVAS LK
Sbjct: 67  AERFATVSSSTTSNDSSSVGV-PSVSIPPPSSYVGSPLFWVGVGVGLSALFTWVASYLK 124


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