BLASTX nr result
ID: Lithospermum22_contig00024500
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00024500
(537 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi... 269 2e-70
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi... 262 3e-68
ref|XP_002516590.1| pentatricopeptide repeat-containing protein,... 254 6e-66
ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 249 1e-64
ref|XP_003603587.1| Pentatricopeptide repeat-containing protein ... 247 9e-64
>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 269 bits (687), Expect = 2e-70
Identities = 125/179 (69%), Positives = 155/179 (86%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
ISGH+++ ++R+ARA+F+EM DK+I SWT ++SGY++IG + DAL+ FRRMQMVG++PD
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSK 360
ISLV+VLPACA LGALELG+WIHFYA+K GFLR CVCNALIEMY+KCGS+DE +LF +
Sbjct: 250 ISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQ 309
Query: 361 MIDRDVISCSTMIAGLANHGRAREAIDLFEAMQRENVEPNEITFVGLLSACGHAGLLDE 537
M +RDVIS STMI GLANHGRA EAI+LF+ MQ+ +EPN ITFVGLLSAC HAGLL+E
Sbjct: 310 MNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNE 368
Score = 87.4 bits (215), Expect = 1e-15
Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 38/204 (18%)
Frame = +1
Query: 37 ARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVG-------VQPDWISLVA 195
A LF + D + + MI Y + A+ V++ QM+G + PD +
Sbjct: 65 ANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYK--QMLGHSHGENPIFPDKFTFPF 122
Query: 196 VLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSKMIDRD 375
V+ +CA L +LG+ +H + K G T V N+L+EMY KC S+D+A ++F +M +RD
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERD 182
Query: 376 VISCSTMIAGLANHGRAR-------------------------------EAIDLFEAMQR 462
+S +T+I+G G+ R +A++ F MQ
Sbjct: 183 AVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQM 242
Query: 463 ENVEPNEITFVGLLSACGHAGLLD 534
+EP+EI+ V +L AC G L+
Sbjct: 243 VGIEPDEISLVSVLPACAQLGALE 266
Score = 70.5 bits (171), Expect = 2e-10
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
I + K + + R LFD+M ++ ++SW+ MI G + G +A+++F+ MQ ++P+
Sbjct: 291 IEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNI 350
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCV--CNALIEMYSKCGSVDEALQLF 354
I+ V +L ACAH G L G +F + K+ + V L+ + G +D+AL+L
Sbjct: 351 ITFVGLLSACAHAGLLNEG-LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELI 409
Query: 355 SKM-IDRDVISCSTMIAGLANHGRAREAIDLFE 450
KM + D ++++ +H A+ E
Sbjct: 410 KKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAME 442
>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 262 bits (669), Expect = 3e-68
Identities = 121/179 (67%), Positives = 154/179 (86%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
ISGH+++ ++R+ARA+F+EM DK+I SWT ++SGY++IG + DAL+ FRRMQMVG++PD
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSK 360
ISLV+VLP CA LGALELG+WIH YA+K GFLR CVCNALIEMY+KCGS+D+ +LF +
Sbjct: 250 ISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQ 309
Query: 361 MIDRDVISCSTMIAGLANHGRAREAIDLFEAMQRENVEPNEITFVGLLSACGHAGLLDE 537
M +RDVIS STMI GLANHGRAREAI+LF+ MQ+ +EP+ ITFVGLL+AC HAGLL+E
Sbjct: 310 MKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNE 368
Score = 84.3 bits (207), Expect = 1e-14
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 38/204 (18%)
Frame = +1
Query: 37 ARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVG-------VQPDWISLVA 195
A LF + D + + MI Y + A+ V++ QM+G + PD +
Sbjct: 65 ANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYK--QMLGNPHGENPIFPDKFTFPF 122
Query: 196 VLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSKMIDRD 375
V+ +CA L +LG+ +H + K G T V N+L+EMY KC S+D+A ++F +M +RD
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERD 182
Query: 376 VISCSTMIAGLANHGRAR-------------------------------EAIDLFEAMQR 462
+S +T+I+G G+ R +A++ F MQ
Sbjct: 183 AVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQM 242
Query: 463 ENVEPNEITFVGLLSACGHAGLLD 534
+EP+EI+ V +L C G L+
Sbjct: 243 VGIEPDEISLVSVLPDCAQLGALE 266
Score = 72.0 bits (175), Expect = 5e-11
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
I + K + + R LFD+M ++ ++SW+ MI G + G +A+++F+ MQ ++P
Sbjct: 291 IEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSI 350
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCV--CNALIEMYSKCGSVDEALQLF 354
I+ V +L ACAH G L G +F + K+ + V L+ + G +D+AL+L
Sbjct: 351 ITFVGLLTACAHAGLLNEG-LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELV 409
Query: 355 SKMIDR-DVISCSTMIAGLANHGRAREAIDLFE 450
KM + D ++++ +HG + A+ E
Sbjct: 410 KKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAME 442
>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 517
Score = 254 bits (649), Expect = 6e-66
Identities = 116/179 (64%), Positives = 150/179 (83%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
ISGH+++ ++R+ARALFDEMP+++IVSWT +ISGY++IGS+ DALDVFR MQ+ G++PD
Sbjct: 168 ISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDE 227
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSK 360
S+++VLPACA LGALE G+WIH + + G LRRTC+CNALIEMY+KCG +D+A QLF +
Sbjct: 228 ASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQ 287
Query: 361 MIDRDVISCSTMIAGLANHGRAREAIDLFEAMQRENVEPNEITFVGLLSACGHAGLLDE 537
M RDVIS STMI GLANHG+ REAI +FE M++ N++PN ITFVGLLSAC HAG +E
Sbjct: 288 MRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEE 346
Score = 71.6 bits (174), Expect = 7e-11
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 40/206 (19%)
Frame = +1
Query: 37 ARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVG---------VQPDWISL 189
A LF E+ D + + MI + + +D +++M + PD +
Sbjct: 39 ASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTF 98
Query: 190 VAVLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKC--------------- 324
V+ ACA LG LG+ +H K G NALI+MY+KC
Sbjct: 99 PFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHE 158
Query: 325 ----------------GSVDEALQLFSKMIDRDVISCSTMIAGLANHGRAREAIDLFEAM 456
G + A LF +M +R ++S + +I+G G +A+D+F M
Sbjct: 159 RGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREM 218
Query: 457 QRENVEPNEITFVGLLSACGHAGLLD 534
Q +EP+E + + +L AC G L+
Sbjct: 219 QIAGIEPDEASIISVLPACAKLGALE 244
Score = 70.9 bits (172), Expect = 1e-10
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 3/172 (1%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
I + K + +A LFD+M + ++SW+ MI G + G +A+ +F RM+ ++P+
Sbjct: 269 IEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNG 328
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCV--CNALIEMYSKCGSVDEALQLF 354
I+ V +L ACAH G E G ++F KK F + +L+++ + G + +AL +
Sbjct: 329 ITFVGLLSACAHAGFWEEG-LMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIV 387
Query: 355 SKM-IDRDVISCSTMIAGLANHGRAREAIDLFEAMQRENVEPNEITFVGLLS 507
KM + D ++++ H A+ E + E +EP++ LLS
Sbjct: 388 EKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHL--EELEPDDTGNYVLLS 437
>ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 249 bits (637), Expect = 1e-64
Identities = 121/179 (67%), Positives = 150/179 (83%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
ISGH+++ ++R+ARA+F+E+ DK+I SWT ++SGY++IG AL+ FRRMQMV ++ D
Sbjct: 164 ISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDE 223
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSK 360
ISLV+VLPACA LGALELG+WIH YA+K GFLR CVCNALIE+Y+K GS+DE +LF K
Sbjct: 224 ISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHK 283
Query: 361 MIDRDVISCSTMIAGLANHGRAREAIDLFEAMQRENVEPNEITFVGLLSACGHAGLLDE 537
M +RDVIS STMI GLANHGRAREAI+LF+ MQ+ VEPN ITFVGLLSAC HAGLL+E
Sbjct: 284 MNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNE 342
Score = 79.3 bits (194), Expect = 3e-13
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 38/204 (18%)
Frame = +1
Query: 37 ARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQ-------PDWISLVA 195
A LF + D + + MI Y + A+ V + QM+G PD +
Sbjct: 39 ANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHK--QMLGHSHGENPXFPDKFTFPF 96
Query: 196 VLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSKMIDRD 375
V+ CA L LG+ +H +A K G T + N+L+EMY KC S+D+A ++F +M +RD
Sbjct: 97 VVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERD 156
Query: 376 VISCSTMIAGLANHGRARE-------------------------------AIDLFEAMQR 462
+S +T+I+G G+ R A++ F MQ
Sbjct: 157 AVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQM 216
Query: 463 ENVEPNEITFVGLLSACGHAGLLD 534
++E +EI+ V +L AC G L+
Sbjct: 217 VDIELDEISLVSVLPACAQLGALE 240
Score = 64.3 bits (155), Expect = 1e-08
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
I + K + + R LF +M ++ ++SW+ MI G + G +A+++F+ MQ V+P+
Sbjct: 265 IEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNI 324
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCV-CNALIEMYSKCGSVDEALQLFS 357
I+ V +L ACAH G L G E+ + L+ + G +D+AL+L
Sbjct: 325 ITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIK 384
Query: 358 KM 363
KM
Sbjct: 385 KM 386
>ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 568
Score = 247 bits (630), Expect = 9e-64
Identities = 114/179 (63%), Positives = 146/179 (81%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
I G++K+ ++ AR LFD+MP ++IVSWT MI+GY ++G +GDALDVFR MQMVG++PD
Sbjct: 184 IFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDE 243
Query: 181 ISLVAVLPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSK 360
IS++AVLPACA LGALE+G+WIH YA+K GFLR+T +CNALIEMY+KCG +DEA LF +
Sbjct: 244 ISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQ 303
Query: 361 MIDRDVISCSTMIAGLANHGRAREAIDLFEAMQRENVEPNEITFVGLLSACGHAGLLDE 537
++++DVIS STMI GLANHG+ EAI LFE M + V PNEITF+G+L AC H GL DE
Sbjct: 304 LVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDE 362
Score = 72.8 bits (177), Expect = 3e-11
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 34/203 (16%)
Frame = +1
Query: 28 VRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRM---QMVGVQPDWISLVAV 198
V A LF ++ +I ++ +I Y+ A+ VF +M V PD + V
Sbjct: 58 VSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFV 117
Query: 199 LPACAHLGALELGRWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFSKMIDRDV 378
+ +C + LG +H K G NALI+MY+K G + A ++F +M RDV
Sbjct: 118 IKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDV 177
Query: 379 ISCS-------------------------------TMIAGLANHGRAREAIDLFEAMQRE 465
IS + TMI G G +A+D+F MQ
Sbjct: 178 ISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMV 237
Query: 466 NVEPNEITFVGLLSACGHAGLLD 534
+EP+EI+ + +L AC G L+
Sbjct: 238 GIEPDEISIIAVLPACAQLGALE 260
Score = 57.4 bits (137), Expect = 1e-06
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 2/163 (1%)
Frame = +1
Query: 1 ISGHMKMRKVRKARALFDEMPDKSIVSWTGMISGYSKIGSFGDALDVFRRMQMVGVQPDW 180
I + K + +A LFD++ +K ++SW+ MI G + G +A+ +F M V V P+
Sbjct: 285 IEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNE 344
Query: 181 ISLVAVLPACAHLGALELG-RWIHFYAEKKGFLRRTCVCNALIEMYSKCGSVDEALQLFS 357
I+ + VL AC+H G + G ++ + LI++ + G + +AL S
Sbjct: 345 ITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTIS 404
Query: 358 KM-IDRDVISCSTMIAGLANHGRAREAIDLFEAMQRENVEPNE 483
KM I D +++++ H + A+ Q +EP E
Sbjct: 405 KMPIKPDSRIWNSLLSSCRIHRNLQIAV--IAVKQLMELEPEE 445