BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00024400
         (788 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   120   6e-43
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   118   1e-41
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   121   3e-41
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               107   7e-40
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                110   1e-39

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  120 bits (301), Expect(2) = 6e-43
 Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 3/185 (1%)
 Frame = +1

Query: 52   VSVVDVKNVMKKSIQDTHKHTLGKCVSSLEIEDAMLSMKVGKATGPDTYSAEFYRDAWLV 231
            +SV D++N+M      T ++ L + V+  EI+  + +M   K+ GPD Y++EF++  W +
Sbjct: 725  ISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSL 784

Query: 232  IKDFVVEAIQTFFVTSHMSKFPQLYCYITLIPKVPKPQHMKDFRHIACCNTI-*FISTIL 408
                 + AIQ+FFV   + K       + LIPK  +   MKD+R I+CCN +   IS IL
Sbjct: 785  TGPDFIAAIQSFFVKGFLPKGLNA-TILALIPKKDEAIEMKDYRPISCCNVLYKVISKIL 843

Query: 409  ANRLKCTLNEFIDIQQTAYVLD--IANRTLLM*ELVCGYHKRAGKPRCALKVDIMKVYGT 582
            ANRLK  L  FI   Q+A+V +  +    LL  ELV  YHK +  PRCA+K+DI K + +
Sbjct: 844  ANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDS 903

Query: 583  EHWNF 597
              W F
Sbjct: 904  VQWQF 908



 Score = 80.5 bits (197), Expect(2) = 6e-43
 Identities = 38/66 (57%), Positives = 46/66 (69%)
 Frame = +3

Query: 591  EFLWKVMEAFNYPDIFINWIKTCVKTPWFSVVVNGSL*GFFKSGRGLRQGDPLSPYLFII 770
            +FL   +EA N+P+ F +WIK C+ T  FSV VNG L GFF S RGLRQG  LSPYLF+I
Sbjct: 907  QFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVI 966

Query: 771  MMDYFS 788
             M+  S
Sbjct: 967  CMNVLS 972


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  118 bits (296), Expect(2) = 1e-41
 Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 5/202 (2%)
 Frame = +1

Query: 7   VNFYKDLFAA--KSNAPVSVVDVKNVMKKSIQDTHKHTLGKCVSSLEIEDAMLSMKVGKA 180
           VN+++D           + V +++N++     +     L + V+  EI+  + SM   K+
Sbjct: 132 VNYFQDFLQTIPADYEGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKS 191

Query: 181 TGPDTYSAEFYRDAWLVIKDFVVEAIQTFFVTSHMSKFPQLYCYITLIPKVPKPQHMKDF 360
            GPD Y++EFY+ +W +I D V+ AIQ+FF    + K       + LIPK  + + +KD+
Sbjct: 192 PGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVN-STILALIPKKKEAREIKDY 250

Query: 361 RHIACCNTI-*FISTILANRLKCTLNEFIDIQQTAYVLD--IANRTLLM*ELVCGYHKRA 531
           R I+CCN +   IS ILANRLK  L +FI   Q+A+V D  +    LL  ELV  YHK +
Sbjct: 251 RPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDS 310

Query: 532 GKPRCALKVDIMKVYGTEHWNF 597
              RCA+K+DI K + +  W+F
Sbjct: 311 ISTRCAMKIDISKAFDSLQWSF 332



 Score = 78.2 bits (191), Expect(2) = 1e-41
 Identities = 37/65 (56%), Positives = 45/65 (69%)
 Frame = +3

Query: 594 FLWKVMEAFNYPDIFINWIKTCVKTPWFSVVVNGSL*GFFKSGRGLRQGDPLSPYLFIIM 773
           FL  V+ A N+P  FI+WI  C+ T  FS+ VNG L G+F+S RGLRQG  LSPYLF+I 
Sbjct: 332 FLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVIS 391

Query: 774 MDYFS 788
           MD  S
Sbjct: 392 MDVLS 396


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  121 bits (303), Expect(2) = 3e-41
 Identities = 72/185 (38%), Positives = 106/185 (57%), Gaps = 3/185 (1%)
 Frame = +1

Query: 52  VSVVDVKNVMKKSIQDTHKHTLGKCVSSLEIEDAMLSMKVGKATGPDTYSAEFYRDAWLV 231
           ++V ++++++     D+ K  L   VS+ EI   + SM   K+ GPD Y+AEFY+ AW +
Sbjct: 316 IAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNI 375

Query: 232 IKDFVVEAIQTFFVTSHMSKFPQLYCYITLIPKVPKPQHMKDFRHIACCNTI-*FISTIL 408
           I    + AIQ+FF    + K       + LIPK  + + MKD+R I+CCN +   IS I+
Sbjct: 376 IGAEFILAIQSFFAKGFLPKGIN-STILALIPKKKEAKEMKDYRPISCCNVLYKVISKII 434

Query: 409 ANRLKCTLNEFIDIQQTAYVLD--IANRTLLM*ELVCGYHKRAGKPRCALKVDIMKVYGT 582
           ANRLK  L +FI   Q+A+V D  +    LL  E+V  YHK +   RCALK+DI K + +
Sbjct: 435 ANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDS 494

Query: 583 EHWNF 597
             W F
Sbjct: 495 VQWKF 499



 Score = 73.9 bits (180), Expect(2) = 3e-41
 Identities = 37/66 (56%), Positives = 43/66 (65%)
 Frame = +3

Query: 591 EFLWKVMEAFNYPDIFINWIKTCVKTPWFSVVVNGSL*GFFKSGRGLRQGDPLSPYLFII 770
           +FL  V+EA N+P  F +WI  C+ T  FSV VNG L G F S R LRQG  LSPYLF+I
Sbjct: 498 KFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVI 557

Query: 771 MMDYFS 788
            MD  S
Sbjct: 558 SMDVLS 563


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  107 bits (268), Expect(2) = 7e-40
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
 Frame = +1

Query: 115 LGKCVSSLEIEDAMLSMKVGKATGPDTYSAEFYRDAWLVIKDFVVEAIQTFFVTSHMSKF 294
           L + VS+ EI+  + SM   K+ GPD +++EF++++W ++    + AIQ+FF    + K 
Sbjct: 2   LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKG 61

Query: 295 PQLYCYITLIPKVPKPQHMKDFRHIACCNTI-*FISTILANRLKCTLNEFIDIQQTAYVL 471
                 + LIPK  + + MKD+R I+CCN +   IS ILANRLK  L +FI   Q+++V 
Sbjct: 62  VN-STILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120

Query: 472 D--IANRTLLM*ELVCGYHKRAGKPRCALKVDIMKVYGTEHWNF 597
           D  +    LL  +LV  YHK +   RCA+K+DI K   +  W+F
Sbjct: 121 DRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSF 164



 Score = 82.8 bits (203), Expect(2) = 7e-40
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 594 FLWKVMEAFNYPDIFINWIKTCVKTPWFSVVVNGSL*GFFKSGRGLRQGDPLSPYLFIIM 773
           FL   + A ++P++FI+WI+ C+ TP FSV VNG L GFF+S RGLRQG  LSPYLF+I 
Sbjct: 164 FLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVIC 223

Query: 774 MDYFS 788
           MD  S
Sbjct: 224 MDVLS 228


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  110 bits (275), Expect(2) = 1e-39
 Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 3/185 (1%)
 Frame = +1

Query: 52  VSVVDVKNVMKKSIQDTHKHTLGKCVSSLEIEDAMLSMKVGKATGPDTYSAEFYRDAWLV 231
           ++V +++N+M      T +  L + V+S E +  + +M   K  GPD Y++EF++  W +
Sbjct: 1   MTVEELQNLMSFRCSATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSI 60

Query: 232 IKDFVVEAIQTFFVTSHMSKFPQLYCYITLIPKVPKPQHMKDFRHIACCNTI-*FISTIL 408
                + AI++FF+   + K       + LIPK  +   M+D+R I+CCN I   IS I+
Sbjct: 61  TGQDFIAAIKSFFIKGFLPKGLNA-TILALIPKKDEATLMRDYRPISCCNVIYKVISKII 119

Query: 409 ANRLKCTLNEFIDIQQTAYVLD--IANRTLLM*ELVCGYHKRAGKPRCALKVDIMKVYGT 582
           ANRLK  L  FI   Q+A+V +  +    LL  ELV  YHK +  PRCA+K+DI K + +
Sbjct: 120 ANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDS 179

Query: 583 EHWNF 597
             W F
Sbjct: 180 VQWQF 184



 Score = 79.7 bits (195), Expect(2) = 1e-39
 Identities = 38/66 (57%), Positives = 46/66 (69%)
 Frame = +3

Query: 591 EFLWKVMEAFNYPDIFINWIKTCVKTPWFSVVVNGSL*GFFKSGRGLRQGDPLSPYLFII 770
           +FL   +EA N+P+ F +WIK C+ T  FSV VNG L GFF S RGLRQG  LSPYLF+I
Sbjct: 183 QFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVI 242

Query: 771 MMDYFS 788
            M+  S
Sbjct: 243 CMNVLS 248