BLASTX nr result
ID: Lithospermum22_contig00024254
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00024254
(1804 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-... 137 8e-42
ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arab... 139 2e-41
ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis th... 139 2e-41
dbj|BAA96898.1| unnamed protein product [Arabidopsis thaliana] 139 2e-40
ref|XP_002306264.1| chromatin remodeling complex subunit [Populu... 134 5e-40
>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
gi|296088517|emb|CBI37508.3| unnamed protein product
[Vitis vinifera]
Length = 1043
Score = 137 bits (344), Expect(2) = 8e-42
Identities = 75/152 (49%), Positives = 101/152 (66%), Gaps = 12/152 (7%)
Frame = +2
Query: 851 YQLPSEVAKQLLPHQREGVDWLVSLHDLGKGGILADEMGLGKTRIVCGFVAGLLHSKMAK 1030
Y+LP ++AK L PHQR+G+ WL SLH GKGGIL D+MGLGKT +CGF+AGL HS + +
Sbjct: 320 YKLPGKIAKMLYPHQRDGLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSCLLR 379
Query: 1031 SCLIVATLTLLTHWREELNCVGLSSYVEEFHGP-GRLKGYE-KISDKGKGILLTTYDTLR 1204
++VA TLL+HW +EL+ VGLS E++G + + YE + + KG+LLTTYD +R
Sbjct: 380 RAVVVAPKTLLSHWIKELSAVGLSEKTREYYGTCTKTRQYELQYVLQDKGVLLTTYDIVR 439
Query: 1205 -NSLHICG---------VDEFTIKFDYMFADE 1270
NS +CG D+FT +DYM DE
Sbjct: 440 NNSKSLCGGNYFHDKRSEDDFT--WDYMILDE 469
Score = 62.0 bits (149), Expect(2) = 8e-42
Identities = 35/100 (35%), Positives = 43/100 (43%)
Frame = +1
Query: 1354 GHLVKNPETQRYQSLYNIKCPHRIIITGTPIQNNLQVCYVISLLIYFL*KSYLGSC*EIL 1533
GHL+KNP TQR +SL I C HRI+++GTPIQNN
Sbjct: 470 GHLIKNPSTQRAKSLMEIPCAHRIVVSGTPIQNN-------------------------- 503
Query: 1534 EEVS*CIYSFFVLHSDFLLQEFYALFDLCVPGLLHDKKWY 1653
L+E +ALF C P LL DK W+
Sbjct: 504 ------------------LKELWALFSFCCPELLGDKNWF 525
>ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
lyrata] gi|297312419|gb|EFH42843.1| hypothetical protein
ARALYDRAFT_496587 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 139 bits (350), Expect(2) = 2e-41
Identities = 75/150 (50%), Positives = 97/150 (64%), Gaps = 10/150 (6%)
Frame = +2
Query: 851 YQLPSEVAKQLLPHQREGVDWLVSLHDLGKGGILADEMGLGKTRIVCGFVAGLLHSKMAK 1030
Y LP ++A L PHQR+G+ WL SLH GKGGIL D+MGLGKT +C F+AGL HSK+ K
Sbjct: 374 YTLPGKIATMLYPHQRDGLKWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIK 433
Query: 1031 SCLIVATLTLLTHWREELNCVGLSSYVEEFHGPG-RLKGYEKISD-KGKGILLTTYDTLR 1204
L+VA TLL HW +EL VGLS E++G + + Y+ +GKG+LLTTYD +R
Sbjct: 434 RALVVAPKTLLPHWMKELATVGLSKMTREYYGTSTKAREYDLHHILQGKGVLLTTYDIVR 493
Query: 1205 NSLH-ICGVDEFT-------IKFDYMFADE 1270
N+ + G D +T IK+DYM DE
Sbjct: 494 NNTKALQGDDHYTDEDDEDGIKWDYMILDE 523
Score = 58.5 bits (140), Expect(2) = 2e-41
Identities = 36/100 (36%), Positives = 43/100 (43%)
Frame = +1
Query: 1354 GHLVKNPETQRYQSLYNIKCPHRIIITGTPIQNNLQVCYVISLLIYFL*KSYLGSC*EIL 1533
GHL+KNP TQR +SL I HRIII+GTPIQNN
Sbjct: 524 GHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNN-------------------------- 557
Query: 1534 EEVS*CIYSFFVLHSDFLLQEFYALFDLCVPGLLHDKKWY 1653
L+E +ALF+ PGLL DK W+
Sbjct: 558 ------------------LKELWALFNFSCPGLLGDKNWF 579
>ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis thaliana]
gi|18087573|gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5
[Arabidopsis thaliana] gi|22655364|gb|AAM98274.1|
At5g63950/MBM17_5 [Arabidopsis thaliana]
gi|332010436|gb|AED97819.1| protein chromatin remodeling
24 [Arabidopsis thaliana]
Length = 1090
Score = 139 bits (349), Expect(2) = 2e-41
Identities = 76/150 (50%), Positives = 97/150 (64%), Gaps = 10/150 (6%)
Frame = +2
Query: 851 YQLPSEVAKQLLPHQREGVDWLVSLHDLGKGGILADEMGLGKTRIVCGFVAGLLHSKMAK 1030
Y LP ++A L PHQREG++WL SLH GKGGIL D+MGLGKT +C F+AGL HSK+ K
Sbjct: 367 YTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIK 426
Query: 1031 SCLIVATLTLLTHWREELNCVGLSSYVEEFHGPG-RLKGYEKISD-KGKGILLTTYDTLR 1204
L+VA TLL HW +EL VGLS E++G + + Y+ +GKGILLTTYD +R
Sbjct: 427 RALVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVR 486
Query: 1205 NSLH-ICGVDEFT-------IKFDYMFADE 1270
N+ + G D +T K+DYM DE
Sbjct: 487 NNTKALQGDDHYTDEDDEDGNKWDYMILDE 516
Score = 58.5 bits (140), Expect(2) = 2e-41
Identities = 36/100 (36%), Positives = 43/100 (43%)
Frame = +1
Query: 1354 GHLVKNPETQRYQSLYNIKCPHRIIITGTPIQNNLQVCYVISLLIYFL*KSYLGSC*EIL 1533
GHL+KNP TQR +SL I HRIII+GTPIQNN
Sbjct: 517 GHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNN-------------------------- 550
Query: 1534 EEVS*CIYSFFVLHSDFLLQEFYALFDLCVPGLLHDKKWY 1653
L+E +ALF+ PGLL DK W+
Sbjct: 551 ------------------LKELWALFNFSCPGLLGDKNWF 572
>dbj|BAA96898.1| unnamed protein product [Arabidopsis thaliana]
Length = 1053
Score = 139 bits (349), Expect(2) = 2e-40
Identities = 76/150 (50%), Positives = 97/150 (64%), Gaps = 10/150 (6%)
Frame = +2
Query: 851 YQLPSEVAKQLLPHQREGVDWLVSLHDLGKGGILADEMGLGKTRIVCGFVAGLLHSKMAK 1030
Y LP ++A L PHQREG++WL SLH GKGGIL D+MGLGKT +C F+AGL HSK+ K
Sbjct: 367 YTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIK 426
Query: 1031 SCLIVATLTLLTHWREELNCVGLSSYVEEFHGPG-RLKGYEKISD-KGKGILLTTYDTLR 1204
L+VA TLL HW +EL VGLS E++G + + Y+ +GKGILLTTYD +R
Sbjct: 427 RALVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVR 486
Query: 1205 NSLH-ICGVDEFT-------IKFDYMFADE 1270
N+ + G D +T K+DYM DE
Sbjct: 487 NNTKALQGDDHYTDEDDEDGNKWDYMILDE 516
Score = 55.1 bits (131), Expect(2) = 2e-40
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +1
Query: 1354 GHLVKNPETQRYQSLYNIKCPHRIIITGTPIQNNLQ 1461
GHL+KNP TQR +SL I HRIII+GTPIQNNL+
Sbjct: 517 GHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLK 552
>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222855713|gb|EEE93260.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1058
Score = 134 bits (336), Expect(2) = 5e-40
Identities = 74/150 (49%), Positives = 95/150 (63%), Gaps = 10/150 (6%)
Frame = +2
Query: 851 YQLPSEVAKQLLPHQREGVDWLVSLHDLGKGGILADEMGLGKTRIVCGFVAGLLHSKMAK 1030
Y+L +AK L PHQREG+ WL SLH GKGGIL D+MGLGKT +C F+AGL HSK+ K
Sbjct: 357 YKLSGTIAKMLYPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIK 416
Query: 1031 SCLIVATLTLLTHWREELNCVGLSSYVEEFHGPG-RLKGYE-KISDKGKGILLTTYDTLR 1204
L+VA TLL+HW +EL+ VGLS+ E+ G + + YE + + KGILLTTYD +R
Sbjct: 417 RALVVAPKTLLSHWIKELSVVGLSAKTREYFGTSLKARDYELQYILQDKGILLTTYDIVR 476
Query: 1205 NSLHICGVDEFTIK--------FDYMFADE 1270
N+ D + I +DYM DE
Sbjct: 477 NNSKSLRGDHYFIDDESEDSYIWDYMILDE 506
Score = 58.9 bits (141), Expect(2) = 5e-40
Identities = 35/100 (35%), Positives = 43/100 (43%)
Frame = +1
Query: 1354 GHLVKNPETQRYQSLYNIKCPHRIIITGTPIQNNLQVCYVISLLIYFL*KSYLGSC*EIL 1533
GHL+KNP TQR +SL I H I+I+GTPIQNN
Sbjct: 507 GHLIKNPSTQRAKSLLEIPSAHCIVISGTPIQNN-------------------------- 540
Query: 1534 EEVS*CIYSFFVLHSDFLLQEFYALFDLCVPGLLHDKKWY 1653
L+E +ALF+ C PGLL D KW+
Sbjct: 541 ------------------LKELWALFNFCCPGLLGDNKWF 562