BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00024202
         (502 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...   102   4e-20
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...    98   8e-19
dbj|BAA22288.1| polyprotein [Oryza australiensis]                      97   1e-18
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]         93   3e-17
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-...    89   3e-16

>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score =  102 bits (253), Expect = 4e-20
 Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
 Frame = +1

Query: 10  LVDSKLGNGQAASPHIIKMIGLVDRLNALGTSVSKELAVDLILKSLPDKFSQFVMNFNMH 189
           L   KL  G   SPH+IKM+G    L  LG  +S+ELA DLIL SLP+ + QF++NF+M+
Sbjct: 126 LFGCKLAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDLILASLPESYGQFILNFHMN 185

Query: 190 KFELSLNELHKMITNAETNLGKTKTSTPSVLVVQNXXXXXXXXXXTSKAKG--------- 342
             + +L ELH M+  AE   G  K     V++VQ             K KG         
Sbjct: 186 GLDKNLTELHMMLKTAE---GSVKKCNNHVIMVQKSTSFKKKAKTWIKKKGKAKVSDKIQ 242

Query: 343 SRNPKVAGQGNTKKDDKCHYCGNLAH*NLTCNKFLEDRKND 465
           +  PK   +    ++++C YC  L H    C K+L D+K +
Sbjct: 243 TDKPKTKTKSGPTQENECFYCKELGHWKRNCKKYLADQKRN 283


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
 Frame = +1

Query: 10  LVDSKLGNGQAASPHIIKMIGLVDRLNALGTSVSKELAVDLILKSLPDKFSQFVMNFNMH 189
           L   KL  G   SPH+IKM+G    L  LG  +S+ELA DLIL SLP  + QF++NF+M+
Sbjct: 209 LFSCKLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMN 268

Query: 190 KFELSLNELHKMITNAETNLGKTKTSTPSVLVVQNXXXXXXXXXXTSKAKGSR------- 348
             + +L ELH ++  AE ++ K  +    V++VQ             K KG +       
Sbjct: 269 GLDKNLTELHMLLKTAEDSIKKINS---HVMMVQKSTSFKKKARTWVKGKGKKVLDGIQT 325

Query: 349 -NPKVAGQGNTKKDDKCHYCGNLAH*NLTCNKFLEDRKNDRTITQP*ENGL 498
             PK+  +    ++++C YC    H    C K+L D K +   T+P  +G+
Sbjct: 326 NKPKLKTKSGPTQENECFYCKEPGHWKRNCKKYLADLKKNGG-TKPSTSGI 375


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 7/164 (4%)
 Frame = +1

Query: 7   ALVDSKLGNGQAASPHIIKMIGLVDRLNALGTSVSKELAVDLILKSLPDKFSQFVMNFNM 186
           +L   +L  G   SPH+IKMIG ++ L  LG  +S+ELA D+IL+SLP  F  F++N++M
Sbjct: 122 SLFACRLVEGNPVSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHM 181

Query: 187 HKFELSLNELHKMITNAETNLGKTKTSTPSVLVVQNXXXXXXXXXXTSKAK-------GS 345
           +  + +L ELH M+   E ++ K   +   V+++QN           +K K        +
Sbjct: 182 NNMDRTLAELHGMLKTVEESIQK---NGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASA 238

Query: 346 RNPKVAGQGNTKKDDKCHYCGNLAH*NLTCNKFLEDRKNDRTIT 477
            N K   +G+   D  C YC    H    C K++ED K  ++ T
Sbjct: 239 SNAKKGKKGSAASDAVCFYCKETGHWKRNCKKYMEDLKKKQSTT 282


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
 Frame = +1

Query: 22  KLGNGQAASPHIIKMIGLVDRLNALGTSVSKELAVDLILKSLPDKFSQFVMNFNMHKFEL 201
           +L  G   SPH+IKMIG  + L+ LG  +S+ELA DLIL+SLP  F  F+MNFNM+    
Sbjct: 203 RLAQGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNR 262

Query: 202 SLNELHKMITNAETNLGKTKTSTPSV--LVVQNXXXXXXXXXXTSKAKGSRNPKVAGQ-G 372
           +L ELH M+  AE ++ K       +  L   N          + +   + N K   Q  
Sbjct: 263 TLAELHGMLKTAEESIKKNSNYVMVMHKLKPNNKKSGQKRKLNSDEITSTSNCKTKVQKT 322

Query: 373 NTKKDDKCHYCGNLAH*NLTCNKFLEDRK 459
              KD +C +C    H    C K+LE  K
Sbjct: 323 GPAKDAECFFCKETGHWKRNCKKYLEQLK 351


>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550176|gb|ABA92973.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 591

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
 Frame = +1

Query: 7   ALVDSKLGNGQAASPHIIKMIGLVDRLNALGTSVSKELAVDLILKSLPDKFSQFVMNFNM 186
           +L   +L  G   SPH+IKMIG  + L+ LG  +S+ELA DLIL+SLP  F  F+MNFNM
Sbjct: 143 SLFACRLAEGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNM 202

Query: 187 HKFELSLNELHKMITNAETNLGKTKTSTPSV--LVVQNXXXXXXXXXXTSKAKGSRNPKV 360
           +    +L ELH  +  AE ++ K       +      N          + +   + N K 
Sbjct: 203 NNLNRTLAELHVTLKTAEESIKKNSNHVMGMHKRKPNNKKSGQKRKLNSDEITTTSNSKT 262

Query: 361 AGQ-GNTKKDDKCHYCGNLAH*NLTCNKFLEDRK 459
             Q     KD +C  C  + H    C K+LE  K
Sbjct: 263 KVQKTGPAKDAECFICKEIGHWKRNCKKYLEQLK 296