BLASTX nr result

ID: Lithospermum22_contig00024054 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00024054
         (630 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding prote...   188   6e-46
emb|CBI19566.3| unnamed protein product [Vitis vinifera]              188   6e-46
ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding prote...   188   6e-46
ref|XP_002327112.1| predicted protein [Populus trichocarpa] gi|2...   186   2e-45
ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional ...   182   6e-44

>ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
           isoform 1 [Vitis vinifera]
          Length = 409

 Score =  188 bits (478), Expect = 6e-46
 Identities = 92/131 (70%), Positives = 104/131 (79%), Gaps = 3/131 (2%)
 Frame = -1

Query: 630 IFVGGLDPNVSDEDLRQPFSNYGEIVSVKIPIGRGCGFVQFANRSDAEEALQKLNGTVIG 451
           IFVGGLDPNVSDEDLRQPFS YGEIVSVKIP+G+GCGFVQFANR++AE+ALQKLNGTVIG
Sbjct: 281 IFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIG 340

Query: 450 KQSVRLSWGRNQGNKHIRADYG---TGAYYGRHVYEGYGYPMPPPHDPIXXXXXXXXXXX 280
           KQ+VRLSWGRN  NK +RAD+G   +GAYYG  VY+GYGY +PPPHDP            
Sbjct: 341 KQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPV 400

Query: 279 XATHPHQQQVN 247
                HQQQV+
Sbjct: 401 YGN--HQQQVS 409


>emb|CBI19566.3| unnamed protein product [Vitis vinifera]
          Length = 324

 Score =  188 bits (478), Expect = 6e-46
 Identities = 92/131 (70%), Positives = 104/131 (79%), Gaps = 3/131 (2%)
 Frame = -1

Query: 630 IFVGGLDPNVSDEDLRQPFSNYGEIVSVKIPIGRGCGFVQFANRSDAEEALQKLNGTVIG 451
           IFVGGLDPNVSDEDLRQPFS YGEIVSVKIP+G+GCGFVQFANR++AE+ALQKLNGTVIG
Sbjct: 196 IFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIG 255

Query: 450 KQSVRLSWGRNQGNKHIRADYG---TGAYYGRHVYEGYGYPMPPPHDPIXXXXXXXXXXX 280
           KQ+VRLSWGRN  NK +RAD+G   +GAYYG  VY+GYGY +PPPHDP            
Sbjct: 256 KQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPV 315

Query: 279 XATHPHQQQVN 247
                HQQQV+
Sbjct: 316 YGN--HQQQVS 324


>ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
           isoform 2 [Vitis vinifera]
          Length = 418

 Score =  188 bits (478), Expect = 6e-46
 Identities = 92/131 (70%), Positives = 104/131 (79%), Gaps = 3/131 (2%)
 Frame = -1

Query: 630 IFVGGLDPNVSDEDLRQPFSNYGEIVSVKIPIGRGCGFVQFANRSDAEEALQKLNGTVIG 451
           IFVGGLDPNVSDEDLRQPFS YGEIVSVKIP+G+GCGFVQFANR++AE+ALQKLNGTVIG
Sbjct: 290 IFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIG 349

Query: 450 KQSVRLSWGRNQGNKHIRADYG---TGAYYGRHVYEGYGYPMPPPHDPIXXXXXXXXXXX 280
           KQ+VRLSWGRN  NK +RAD+G   +GAYYG  VY+GYGY +PPPHDP            
Sbjct: 350 KQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPV 409

Query: 279 XATHPHQQQVN 247
                HQQQV+
Sbjct: 410 YGN--HQQQVS 418


>ref|XP_002327112.1| predicted protein [Populus trichocarpa] gi|222835427|gb|EEE73862.1|
           predicted protein [Populus trichocarpa]
          Length = 429

 Score =  186 bits (473), Expect = 2e-45
 Identities = 91/132 (68%), Positives = 103/132 (78%), Gaps = 4/132 (3%)
 Frame = -1

Query: 630 IFVGGLDPNVSDEDLRQPFSNYGEIVSVKIPIGRGCGFVQFANRSDAEEALQKLNGTVIG 451
           IFVGGLDPNV+DEDL+QPFS YGEIVSVKIP+G+GCGFVQFANR +AEEALQKLNGTVIG
Sbjct: 298 IFVGGLDPNVTDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRDNAEEALQKLNGTVIG 357

Query: 450 KQSVRLSWGRNQGNKHIRADYGT---GAYYGRHVYEGYGYPMPPPHDPIXXXXXXXXXXX 280
           KQ+VRLSWGRN  NK  RAD+G+   GAYYG  VY+GYGY +PPPHDP            
Sbjct: 358 KQTVRLSWGRNPANKQFRADFGSPWNGAYYGGQVYDGYGYALPPPHDPSMYAAAAAAYGA 417

Query: 279 XATH-PHQQQVN 247
              +  HQQQV+
Sbjct: 418 YPIYGSHQQQVS 429


>ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
           [Glycine max]
          Length = 401

 Score =  182 bits (461), Expect = 6e-44
 Identities = 85/108 (78%), Positives = 94/108 (87%), Gaps = 3/108 (2%)
 Frame = -1

Query: 630 IFVGGLDPNVSDEDLRQPFSNYGEIVSVKIPIGRGCGFVQFANRSDAEEALQKLNGTVIG 451
           IFVGGLDPNVSDEDLRQPFS YGEIVSVKIP+G+GCGFVQFANR++AEEALQKLNGT IG
Sbjct: 273 IFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIG 332

Query: 450 KQSVRLSWGRNQGNKHIRADYG---TGAYYGRHVYEGYGYPMPPPHDP 316
           KQ+VRLSWGRN  NK  R D+G   TGAYYG  +Y+GYGY +PP HDP
Sbjct: 333 KQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDP 380


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