BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00023944
         (1507 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32762.3| unnamed protein product [Vitis vinifera]              413   e-125
ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containi...   413   e-125
ref|XP_002515739.1| pentatricopeptide repeat-containing protein,...   403   e-123
ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago t...   395   e-113
ref|XP_002879404.1| pentatricopeptide repeat-containing protein ...   379   e-112

>emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  413 bits (1061), Expect(2) = e-125
 Identities = 200/368 (54%), Positives = 275/368 (74%), Gaps = 2/368 (0%)
 Frame = -3

Query: 1100 FLLALKNGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSR 927
            +LLAL+ GG+ +    F++RMV  +V +TVY+LT+V+   CKRG+V+  RKL+  +    
Sbjct: 200  YLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKG 259

Query: 926  VKPNGRTYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAE 747
            VK N  TY  FIE Y KR+D G V E+LT M K GV+ N   YT+L+ G+++ GK EEA+
Sbjct: 260  VKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQ 319

Query: 746  RVFDELREKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGL 567
            R+F+E+REKG+  DV +Y+ +I   CR   +KRA  LFDE+ +KGL+P+AHTYG+LI G+
Sbjct: 320  RLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGV 379

Query: 566  CKVGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDV 387
            CK G+M+AA++L+NEMQ  GID N VIFNTLI GYC+ G +D+A  LQ +ME+KGL+ DV
Sbjct: 380  CKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDV 439

Query: 386  YSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLE 207
            ++Y+++A+GL KLNR +EAKGLL SMVE+G+  NT+++T LI ++CKEGN  EAKR   E
Sbjct: 440  FAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE 499

Query: 206  MEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGK 27
            ME+K   PN++TYN L+DGY K   M EAH+L+ E+E++G++PDV T TSL HGECI GK
Sbjct: 500  MEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGK 559

Query: 26   IDEALKLF 3
            +D ALKLF
Sbjct: 560  VDMALKLF 567



 Score = 64.7 bits (156), Expect(2) = e-125
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = -2

Query: 1248 KCKDTNIITKLFDMLFRVYADTRKFLEAMEIFEHMVKSCFEIDERSCMVFFTCIEK 1081
            KC       K FD+LFRVYAD + F EA+E FEHM K  F IDERSC+V+   + +
Sbjct: 151  KCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRR 206



 Score =  160 bits (405), Expect = 8e-37
 Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 2/311 (0%)
 Frame = -3

Query: 1082 NGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSRVKPNGR 909
            N G+ E  +  ++ M E  +   VY  T +I   C+ G V  A  L   M    + P+  
Sbjct: 311  NIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAH 370

Query: 908  TYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDEL 729
            TY   I    K     +   ++ EM   G+ LN   +  L++GY  SG  +EA R+   +
Sbjct: 371  TYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVM 430

Query: 728  REKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKM 549
             +KG+  DV  Y+ +   LC+ ++   A  L   +VE+G+ PN  ++ +LID  CK G  
Sbjct: 431  EKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNF 490

Query: 548  DAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTV 369
              A+ +  EM+  G   N++ +N LI GY K+G + +A  L+D +E +GL PDVY+ +++
Sbjct: 491  VEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSL 550

Query: 368  AAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRV 189
              G     +++ A  L   M ++GL  N VTYT +I    K+G  +EA +   EM++  +
Sbjct: 551  IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGL 610

Query: 188  KPNVVTYNCLL 156
             P+   Y+ L+
Sbjct: 611  TPDDTVYSSLV 621



 Score =  147 bits (371), Expect = 7e-33
 Identities = 93/351 (26%), Positives = 163/351 (46%)
 Frame = -3

Query: 1067 EMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLLMIGSRVKPNGRTYAMFIE 888
            E+  +F    V+  + + V  +  ++ + C   + +          R K   + + +   
Sbjct: 118  EIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCN----------RAKFKEKFFDLLFR 167

Query: 887  AYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELREKGVMG 708
             Y     FG   E    M K G  ++     + +      G+ +   R F  +    V  
Sbjct: 168  VYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEV 227

Query: 707  DVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLL 528
             V   ++++  LC+   ++    L DE+  KG+  N  TY + I+G  K   +     +L
Sbjct: 228  TVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEIL 287

Query: 527  NEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAAGLSKL 348
              M+ +G+  N+V +  LI G+   G+I++A  L + M  KG++ DVY Y+++ +   + 
Sbjct: 288  TLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 347

Query: 347  NRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTY 168
              ++ A  L   M +KGL  +  TY  LI   CK G ++ A+  + EM+ K +  N V +
Sbjct: 348  GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 407

Query: 167  NCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGKIDEA 15
            N L+DGYC+   ++EA  L+  ME KG+  DV  Y S+A G C   + DEA
Sbjct: 408  NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 458



 Score =  143 bits (360), Expect = 1e-31
 Identities = 82/284 (28%), Positives = 142/284 (50%)
 Frame = -3

Query: 857 VDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELREKGVMGDVQLYSVMIK 678
           VD+   E   +        + +L   YA +  F EA   F+ + +KG   D +   V + 
Sbjct: 143 VDDACNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLL 202

Query: 677 WLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLLNEMQMDGIDS 498
            L R  ++      F  +V   +    ++   ++DGLCK G ++    L++E+   G+ +
Sbjct: 203 ALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKA 262

Query: 497 NLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAAGLSKLNRLEEAKGLL 318
           N+V +N  I GY K+  +     +  +ME++G+  +V +Y+ +  G S + ++EEA+ L 
Sbjct: 263 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF 322

Query: 317 SSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTYNCLLDGYCKL 138
             M EKG+  +   YT +I  +C+ GN+  A     EM  K + P+  TY  L+ G CK 
Sbjct: 323 EEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKA 382

Query: 137 ERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGKIDEALKL 6
            +M  A  L  EM+ KG+  +   + +L  G C +G +DEAL+L
Sbjct: 383 GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRL 426



 Score =  131 bits (330), Expect = 4e-28
 Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1076 GEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLLMIGSR--VKPNGRTY 903
            G+ E  ++    M    +++       +I  YC+ G VDEA +L ++  +  ++ +   Y
Sbjct: 383  GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAY 442

Query: 902  AMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELRE 723
                    K         +L  M + GVS NT  +T L++ Y   G F EA+RVF E+ E
Sbjct: 443  NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 502

Query: 722  KGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDA 543
            KG + ++  Y+V+I    +   MK A  L DEL  +GL+P+ +T  SLI G C  GK+D 
Sbjct: 503  KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 562

Query: 542  AEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAA 363
            A  L +EM   G+  N+V +  +I G  K GR ++A+ L D M+  GL PD   YS++  
Sbjct: 563  ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVG 622

Query: 362  GL 357
             L
Sbjct: 623  SL 624



 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
 Frame = -3

Query: 1040 MVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSRVKPNGRTYAMFIEAYMKRMD 867
            MVE  V+    + T +I  YCK G   EA+++   M      PN  TY + I+ Y KR +
Sbjct: 465  MVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 524

Query: 866  FGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELREKGVMGDVQLYSV 687
                 ++  E+   G+  +    T L+ G    GK + A ++FDE+ ++G++ +V  Y+ 
Sbjct: 525  MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 584

Query: 686  MIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLLNEMQMDG 507
            MI  L +  + + AF L+DE+ E GL P+   Y SL+  L    +  + ++  ++++ + 
Sbjct: 585  MISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADESISMQIQGSQVKANK 644

Query: 506  ID 501
            +D
Sbjct: 645  VD 646



 Score = 84.0 bits (206), Expect = 1e-13
 Identities = 59/207 (28%), Positives = 91/207 (43%)
 Frame = -3

Query: 623 VEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRI 444
           V+ GL        SL+D  C   K + A+                 F+ L   Y      
Sbjct: 128 VDDGLRVPVTVIASLVDDACNESKCNRAKFKEK------------FFDLLFRVYADNKMF 175

Query: 443 DKAWSLQDIMERKGLKPDVYSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTIL 264
            +A    + ME+KG   D  S       L +  +++        MV   + +   + TI+
Sbjct: 176 GEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIV 235

Query: 263 IKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGV 84
           +   CK G+++  ++ + E+  K VK NVVTYN  ++GY K   +    E+   ME +GV
Sbjct: 236 LDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGV 295

Query: 83  VPDVCTYTSLAHGECIAGKIDEALKLF 3
             +V TYT L HG    GKI+EA +LF
Sbjct: 296 ACNVVTYTLLIHGFSNIGKIEEAQRLF 322


>ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32630-like
            [Vitis vinifera]
          Length = 625

 Score =  413 bits (1061), Expect(2) = e-125
 Identities = 200/368 (54%), Positives = 275/368 (74%), Gaps = 2/368 (0%)
 Frame = -3

Query: 1100 FLLALKNGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSR 927
            +LLAL+ GG+ +    F++RMV  +V +TVY+LT+V+   CKRG+V+  RKL+  +    
Sbjct: 196  YLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKG 255

Query: 926  VKPNGRTYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAE 747
            VK N  TY  FIE Y KR+D G V E+LT M K GV+ N   YT+L+ G+++ GK EEA+
Sbjct: 256  VKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQ 315

Query: 746  RVFDELREKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGL 567
            R+F+E+REKG+  DV +Y+ +I   CR   +KRA  LFDE+ +KGL+P+AHTYG+LI G+
Sbjct: 316  RLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGV 375

Query: 566  CKVGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDV 387
            CK G+M+AA++L+NEMQ  GID N VIFNTLI GYC+ G +D+A  LQ +ME+KGL+ DV
Sbjct: 376  CKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDV 435

Query: 386  YSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLE 207
            ++Y+++A+GL KLNR +EAKGLL SMVE+G+  NT+++T LI ++CKEGN  EAKR   E
Sbjct: 436  FAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE 495

Query: 206  MEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGK 27
            ME+K   PN++TYN L+DGY K   M EAH+L+ E+E++G++PDV T TSL HGECI GK
Sbjct: 496  MEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGK 555

Query: 26   IDEALKLF 3
            +D ALKLF
Sbjct: 556  VDMALKLF 563



 Score = 64.7 bits (156), Expect(2) = e-125
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = -2

Query: 1248 KCKDTNIITKLFDMLFRVYADTRKFLEAMEIFEHMVKSCFEIDERSCMVFFTCIEK 1081
            KC       K FD+LFRVYAD + F EA+E FEHM K  F IDERSC+V+   + +
Sbjct: 147  KCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRR 202



 Score =  160 bits (405), Expect = 8e-37
 Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 2/311 (0%)
 Frame = -3

Query: 1082 NGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSRVKPNGR 909
            N G+ E  +  ++ M E  +   VY  T +I   C+ G V  A  L   M    + P+  
Sbjct: 307  NIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAH 366

Query: 908  TYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDEL 729
            TY   I    K     +   ++ EM   G+ LN   +  L++GY  SG  +EA R+   +
Sbjct: 367  TYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVM 426

Query: 728  REKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKM 549
             +KG+  DV  Y+ +   LC+ ++   A  L   +VE+G+ PN  ++ +LID  CK G  
Sbjct: 427  EKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNF 486

Query: 548  DAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTV 369
              A+ +  EM+  G   N++ +N LI GY K+G + +A  L+D +E +GL PDVY+ +++
Sbjct: 487  VEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSL 546

Query: 368  AAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRV 189
              G     +++ A  L   M ++GL  N VTYT +I    K+G  +EA +   EM++  +
Sbjct: 547  IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGL 606

Query: 188  KPNVVTYNCLL 156
             P+   Y+ L+
Sbjct: 607  TPDDTVYSSLV 617



 Score =  147 bits (371), Expect = 7e-33
 Identities = 93/351 (26%), Positives = 163/351 (46%)
 Frame = -3

Query: 1067 EMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLLMIGSRVKPNGRTYAMFIE 888
            E+  +F    V+  + + V  +  ++ + C   + +          R K   + + +   
Sbjct: 114  EIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCN----------RAKFKEKFFDLLFR 163

Query: 887  AYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELREKGVMG 708
             Y     FG   E    M K G  ++     + +      G+ +   R F  +    V  
Sbjct: 164  VYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEV 223

Query: 707  DVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLL 528
             V   ++++  LC+   ++    L DE+  KG+  N  TY + I+G  K   +     +L
Sbjct: 224  TVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEIL 283

Query: 527  NEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAAGLSKL 348
              M+ +G+  N+V +  LI G+   G+I++A  L + M  KG++ DVY Y+++ +   + 
Sbjct: 284  TLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 343

Query: 347  NRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTY 168
              ++ A  L   M +KGL  +  TY  LI   CK G ++ A+  + EM+ K +  N V +
Sbjct: 344  GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 403

Query: 167  NCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGKIDEA 15
            N L+DGYC+   ++EA  L+  ME KG+  DV  Y S+A G C   + DEA
Sbjct: 404  NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 454



 Score =  143 bits (360), Expect = 1e-31
 Identities = 82/284 (28%), Positives = 142/284 (50%)
 Frame = -3

Query: 857 VDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELREKGVMGDVQLYSVMIK 678
           VD+   E   +        + +L   YA +  F EA   F+ + +KG   D +   V + 
Sbjct: 139 VDDACNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLL 198

Query: 677 WLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLLNEMQMDGIDS 498
            L R  ++      F  +V   +    ++   ++DGLCK G ++    L++E+   G+ +
Sbjct: 199 ALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKA 258

Query: 497 NLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAAGLSKLNRLEEAKGLL 318
           N+V +N  I GY K+  +     +  +ME++G+  +V +Y+ +  G S + ++EEA+ L 
Sbjct: 259 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF 318

Query: 317 SSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTYNCLLDGYCKL 138
             M EKG+  +   YT +I  +C+ GN+  A     EM  K + P+  TY  L+ G CK 
Sbjct: 319 EEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKA 378

Query: 137 ERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGKIDEALKL 6
            +M  A  L  EM+ KG+  +   + +L  G C +G +DEAL+L
Sbjct: 379 GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRL 422



 Score =  131 bits (330), Expect = 4e-28
 Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1076 GEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLLMIGSR--VKPNGRTY 903
            G+ E  ++    M    +++       +I  YC+ G VDEA +L ++  +  ++ +   Y
Sbjct: 379  GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAY 438

Query: 902  AMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELRE 723
                    K         +L  M + GVS NT  +T L++ Y   G F EA+RVF E+ E
Sbjct: 439  NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 498

Query: 722  KGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDA 543
            KG + ++  Y+V+I    +   MK A  L DEL  +GL+P+ +T  SLI G C  GK+D 
Sbjct: 499  KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 558

Query: 542  AEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAA 363
            A  L +EM   G+  N+V +  +I G  K GR ++A+ L D M+  GL PD   YS++  
Sbjct: 559  ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVG 618

Query: 362  GL 357
             L
Sbjct: 619  SL 620



 Score = 84.0 bits (206), Expect = 1e-13
 Identities = 59/207 (28%), Positives = 91/207 (43%)
 Frame = -3

Query: 623 VEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRI 444
           V+ GL        SL+D  C   K + A+                 F+ L   Y      
Sbjct: 124 VDDGLRVPVTVIASLVDDACNESKCNRAKFKEK------------FFDLLFRVYADNKMF 171

Query: 443 DKAWSLQDIMERKGLKPDVYSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTIL 264
            +A    + ME+KG   D  S       L +  +++        MV   + +   + TI+
Sbjct: 172 GEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIV 231

Query: 263 IKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGV 84
           +   CK G+++  ++ + E+  K VK NVVTYN  ++GY K   +    E+   ME +GV
Sbjct: 232 LDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGV 291

Query: 83  VPDVCTYTSLAHGECIAGKIDEALKLF 3
             +V TYT L HG    GKI+EA +LF
Sbjct: 292 ACNVVTYTLLIHGFSNIGKIEEAQRLF 318


>ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545176|gb|EEF46686.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 613

 Score =  403 bits (1035), Expect(2) = e-123
 Identities = 198/366 (54%), Positives = 267/366 (72%), Gaps = 2/366 (0%)
 Frame = -3

Query: 1097 LLALKNGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSRV 924
            LLALK   +  M   F+K+MVE  V++TVY++T+VI   CK+G V+ A+ L+  M G  +
Sbjct: 187  LLALKRSDQMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGI 246

Query: 923  KPNGRTYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAER 744
            KPN  TY   + AY+K MDF  V+E+L  M    V  N A YT+L+E Y SSGK  EAE+
Sbjct: 247  KPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEK 306

Query: 743  VFDELREKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLC 564
            VF+++ E+GV  D+ +++ +I W C+   MKRAFALFDEL E+GLV NAHTYG+LI G C
Sbjct: 307  VFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTC 366

Query: 563  KVGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVY 384
              G++DAAE+L+NEMQ  G+D NLVIFNTLI GYCK+G ID+A  +QD+ME+KG + D++
Sbjct: 367  NSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIF 426

Query: 383  SYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEM 204
            +Y+T+A GL KLNR EEAK  L +MVEKG+  N V++TI+I +HCKEGN+ EA+R   +M
Sbjct: 427  TYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDM 486

Query: 203  EKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGKI 24
            +KK  KPNVVTYN L+DGY K  ++ EA+ L+ EMES G+  D+ TYT+L HGEC+ GK+
Sbjct: 487  KKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKV 546

Query: 23   DEALKL 6
            +EAL L
Sbjct: 547  EEALTL 552



 Score = 67.4 bits (163), Expect(2) = e-123
 Identities = 36/117 (30%), Positives = 60/117 (51%)
 Frame = -2

Query: 1431 KPLINSYSSLLHKPNIDAQVMXXXXXXXXXXXXXXXKIMTLLAKDHNLTYANAHFSLLVQ 1252
            K L  + S + HKP++ A V+                ++T  A D NL  + + F  L+ 
Sbjct: 76   KCLQKNQSLICHKPDLRAHVILISRLFKARKFVVMKNVLTCYAMDKNLRCSVSDFVSLID 135

Query: 1251 VKCKDTNIITKLFDMLFRVYADTRKFLEAMEIFEHMVKSCFEIDERSCMVFFTCIEK 1081
             +  +   + KL DMLFRVY D   F E  ++F++MV +  +ID+RSC+V    +++
Sbjct: 136  NRFHEPKFVEKLCDMLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKR 192



 Score =  162 bits (411), Expect = 2e-37
 Identities = 94/300 (31%), Positives = 156/300 (52%), Gaps = 2/300 (0%)
 Frame = -3

Query: 1049 YKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSRVKPNGRTYAMFIEAYMK 876
            +++M+E  V   ++  T +I   CK G +  A  L   +    +  N  TY   I     
Sbjct: 308  FEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCN 367

Query: 875  RMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELREKGVMGDVQL 696
                 + + ++ EM   G+ +N   +  L+ GY   G  +EA R+ D + +KG   D+  
Sbjct: 368  SGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFT 427

Query: 695  YSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDAAEVLLNEMQ 516
            Y+ +   LC+ ++ + A      +VEKG+ PNA ++  +ID  CK G +  AE +  +M+
Sbjct: 428  YNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMK 487

Query: 515  MDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAAGLSKLNRLE 336
              G   N+V +NTLI GY K+G++ +A+ L+D ME  G+  D+Y+Y+T+  G     ++E
Sbjct: 488  KKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVE 547

Query: 335  EAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTYNCLL 156
            EA  LL+ +  KGL ++ VTYT +I    KEG  +EA R   EM    + P+   Y  L+
Sbjct: 548  EALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLV 607



 Score =  133 bits (335), Expect = 1e-28
 Identities = 83/297 (27%), Positives = 150/297 (50%), Gaps = 2/297 (0%)
 Frame = -3

Query: 899  MFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELREK 720
            M    Y+    F    +V   M  +G+ ++     + +     S +   +   F ++ E 
Sbjct: 150  MLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEF 209

Query: 719  GVMGDVQLYS--VMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMD 546
             V  DV +YS  ++I  LC+  +++RA  L  E+  KG+ PN  TY +L++   K+   +
Sbjct: 210  KV--DVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFE 267

Query: 545  AAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVA 366
                +L  M+MD +  N   +  LI  Y   G+I +A  + + M  +G++ D++ ++++ 
Sbjct: 268  GVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSII 327

Query: 365  AGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVK 186
            +   KL  ++ A  L   + E+GL  N  TY  LI   C  G +D A+  + EM+ + + 
Sbjct: 328  SWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLD 387

Query: 185  PNVVTYNCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGKIDEA 15
             N+V +N L++GYCK   ++EA  ++  ME KG   D+ TY ++A G C   + +EA
Sbjct: 388  MNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEA 444



 Score =  124 bits (310), Expect = 8e-26
 Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 2/246 (0%)
 Frame = -3

Query: 1082 NGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKL--LMIGSRVKPNGR 909
            N G+ +  ++    M    +++ +     +I  YCK+G +DEA ++  +M     + +  
Sbjct: 367  NSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIF 426

Query: 908  TYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDEL 729
            TY        K          L  M + GV  N   +TI+++ +   G   EAERVF ++
Sbjct: 427  TYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDM 486

Query: 728  REKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKM 549
            ++KG   +V  Y+ +I    +  K+K A+ L DE+   G+  + +TY +L+ G C  GK+
Sbjct: 487  KKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKV 546

Query: 548  DAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTV 369
            + A  LLNE+   G+  ++V +  +I G  K+GR ++A+ L D M   GL PD   Y+++
Sbjct: 547  EEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSL 606

Query: 368  AAGLSK 351
             A L K
Sbjct: 607  VANLHK 612



 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 52/154 (33%), Positives = 78/154 (50%)
 Frame = -3

Query: 464 YCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLN 285
           Y      ++ + + D M   GLK D  S       L + +++  + G    MVE  + + 
Sbjct: 155 YVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVT 214

Query: 284 TVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRA 105
             + TI+I   CK+G ++ AK  +LEM  K +KPNVVTYN L++ Y K+      +E+  
Sbjct: 215 VYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLR 274

Query: 104 EMESKGVVPDVCTYTSLAHGECIAGKIDEALKLF 3
            ME   VV +  TYT L      +GKI EA K+F
Sbjct: 275 LMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVF 308



 Score = 74.7 bits (182), Expect = 6e-11
 Identities = 43/129 (33%), Positives = 65/129 (50%)
 Frame = -3

Query: 389 VYSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLL 210
           VYS + V  GL K  R+E AK L+  M  KG+  N VTY  L+  + K  + +     L 
Sbjct: 215 VYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLR 274

Query: 209 EMEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAG 30
            ME  +V  N  TY  L++ Y    ++ EA ++  +M  +GV  D+  +TS+   +C  G
Sbjct: 275 LMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLG 334

Query: 29  KIDEALKLF 3
            +  A  LF
Sbjct: 335 NMKRAFALF 343


>ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
            gi|355479250|gb|AES60453.1| Pentatricopeptide repeat
            protein [Medicago truncatula]
          Length = 772

 Score =  395 bits (1016), Expect(2) = e-113
 Identities = 198/369 (53%), Positives = 274/369 (74%), Gaps = 4/369 (1%)
 Frame = -3

Query: 1097 LLALKNGGEYEMLKIFYKRMVECN-VNITVYALTLVIGEYCKRGEVDEARKLL--MIGSR 927
            LLALK  GE +    F+ RMVE N   I V +LTLVI   C+RGEV++A++L+  M+G  
Sbjct: 187  LLALKRCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKG 246

Query: 926  -VKPNGRTYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEA 750
             VKPN  TY   + AY+ R D   VDE+L  M K  V  + A Y+IL++ Y+SSG  EEA
Sbjct: 247  IVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEA 306

Query: 749  ERVFDELREKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDG 570
            E++F+E+REK +  DV +YS MI W  R   MKRAFALFDE+ ++ +VPNAHTYG+LI G
Sbjct: 307  EKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGG 366

Query: 569  LCKVGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPD 390
            +CK G+M+AAE+LL EMQ  G+D NLVIFNT + GYC++G++D+A  LQ IME+KG+  D
Sbjct: 367  VCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINAD 426

Query: 389  VYSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLL 210
            V++Y+ +A GL KL+R +EAK +L+SMVEKG+  N VT+T+ I+++CKEGN+ EA+R   
Sbjct: 427  VFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFR 486

Query: 209  EMEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAG 30
            +MEKK   PN++TYN L+D YCK E++ +AH++++EM +KG++PD+ TY+SL HGECI G
Sbjct: 487  DMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVG 546

Query: 29   KIDEALKLF 3
            ++DEALKLF
Sbjct: 547  RVDEALKLF 555



 Score = 42.4 bits (98), Expect(2) = e-113
 Identities = 27/115 (23%), Positives = 56/115 (48%)
 Frame = -2

Query: 1425 LINSYSSLLHKPNIDAQVMXXXXXXXXXXXXXXXKIMTLLAKDHNLTYANAHFSLLVQVK 1246
            L   +S++  KP++ A ++                I+  L  D ++    +  S++  V 
Sbjct: 80   LKTQHSNISLKPDLKAHLILISRLFEARKFATMKSILNGLVTDSDIECPVS--SIVDLVD 137

Query: 1245 CKDTNIITKLFDMLFRVYADTRKFLEAMEIFEHMVKSCFEIDERSCMVFFTCIEK 1081
              +++ + K  DMLFRV +D R F E + +++++ +    I+ERSC V    +++
Sbjct: 138  EFESHFVEKFCDMLFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKR 192



 Score =  166 bits (421), Expect = 1e-38
 Identities = 99/316 (31%), Positives = 161/316 (50%), Gaps = 2/316 (0%)
 Frame = -3

Query: 1082 NGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSRVKPNGR 909
            + G+ E  +  ++ M E N+ + VY  + +I    + G +  A  L   M    + PN  
Sbjct: 299  SSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAH 358

Query: 908  TYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDEL 729
            TY   I    K     + + +L EM   GV LN   +   ++GY   GK +EA R+   +
Sbjct: 359  TYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIM 418

Query: 728  REKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKM 549
             +KG+  DV  Y+++   LC+  +   A  + + +VEKG+ PN  T+   I+  CK G +
Sbjct: 419  EKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNL 478

Query: 548  DAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTV 369
              AE L  +M+  G   N++ +NTLI  YCK+ ++ +A  ++  M  KGL PD+Y+YS++
Sbjct: 479  AEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSL 538

Query: 368  AAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRV 189
              G   + R++EA  L + M  KG+  N  TYT +I    KEG  DEA +   EM K  +
Sbjct: 539  IHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGL 598

Query: 188  KPNVVTYNCLLDGYCK 141
             P+   +  L+  + K
Sbjct: 599  IPDDRVFTSLVGSFHK 614



 Score =  136 bits (343), Expect = 1e-29
 Identities = 91/288 (31%), Positives = 148/288 (51%), Gaps = 39/288 (13%)
 Frame = -3

Query: 761  FEEAERVFDELREKGVMGD------------------------------------VQLYS 690
            F+E  RV+D + EKG++ +                                    VQ  +
Sbjct: 161  FDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESNKFEIRVQSLT 220

Query: 689  VMIKWLCRFSKMKRAFALFDELVEKGLV-PNAHTYGSLIDGLCKVGKMD--AAEVLLNEM 519
            ++I  LCR  ++++A  L DE+V KG+V PN  TY +L++    VG+ D    + +L  M
Sbjct: 221  LVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAY--VGRKDRKGVDEILKLM 278

Query: 518  QMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAAGLSKLNRL 339
            + + +  ++  ++ LI  Y   G I++A  + + M  K ++ DVY YS++ +   +L  +
Sbjct: 279  EKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNM 338

Query: 338  EEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEMEKKRVKPNVVTYNCL 159
            + A  L   M ++ +  N  TY  LI   CK G ++ A+  LLEM+ K V  N+V +N  
Sbjct: 339  KRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTT 398

Query: 158  LDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGKIDEA 15
            +DGYC+  +M+EA  L+A ME KG+  DV TY  LA+G C   + DEA
Sbjct: 399  MDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEA 446


>ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297325243|gb|EFH55663.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 605

 Score =  379 bits (973), Expect(2) = e-112
 Identities = 179/368 (48%), Positives = 261/368 (70%), Gaps = 2/368 (0%)
 Frame = -3

Query: 1100 FLLALKNGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSR 927
            FL+A K     ++   F++RMV+  V ITVY+LT+V+   C+RGEV++++KL+    G  
Sbjct: 176  FLVAAKKRRRIDLCLEFFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKG 235

Query: 926  VKPNGRTYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAE 747
            +KP   TY   I AY+K  DF  V+++L  M K GV  N   YT+L+E    +GK  + E
Sbjct: 236  IKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVE 295

Query: 746  RVFDELREKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGL 567
            ++FDE+RE+G+  D+ +Y+ +I W CR   +KRAF LFDEL EKGL+P++HTYG+LIDG+
Sbjct: 296  KLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGV 355

Query: 566  CKVGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDV 387
            CKVG+M AAE+L+NEMQ  G++   V+FNTLI GYC++G ID+A  + D+ME+KG + DV
Sbjct: 356  CKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADV 415

Query: 386  YSYSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLE 207
            ++ +T+A+  ++L R +EAK  L  M+E G+ L+TV+YT LI ++CKEGN++EAKR  +E
Sbjct: 416  FTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVE 475

Query: 206  MEKKRVKPNVVTYNCLLDGYCKLERMNEAHELRAEMESKGVVPDVCTYTSLAHGECIAGK 27
            M  K V+PN +TYN ++  YCK  ++ EA +L A M++ G+ PD  TYTSL HGECIA  
Sbjct: 476  MSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADN 535

Query: 26   IDEALKLF 3
            +DEA++LF
Sbjct: 536  VDEAMRLF 543



 Score = 53.9 bits (128), Expect(2) = e-112
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = -2

Query: 1221 KLFDMLFRVYADTRKFLEAMEIFEHMVKSCFEIDERSCMVFFTCIEK 1081
            K FD++FRVY D   F E + +F++MVK    IDERSC+VF    +K
Sbjct: 136  KFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKK 182



 Score =  148 bits (373), Expect = 4e-33
 Identities = 90/315 (28%), Positives = 156/315 (49%), Gaps = 2/315 (0%)
 Frame = -3

Query: 1094 LALKNGGEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKLL--MIGSRVK 921
            L++KNG   ++ K+F   M E  +   ++  T +I   C++G +  A  L   +    + 
Sbjct: 284  LSVKNGKMNDVEKLF-DEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLL 342

Query: 920  PNGRTYAMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERV 741
            P+  TY   I+   K  + G+ + ++ EM   GV++    +  L+ GY   G  +EA  +
Sbjct: 343  PSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMI 402

Query: 740  FDELREKGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCK 561
            +D + +KG   DV   + +     R  +   A      ++E G+  +  +Y +LID  CK
Sbjct: 403  YDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCK 462

Query: 560  VGKMDAAEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYS 381
             G ++ A+ L  EM    +  N + +N +I  YCKQG++ +A  L   M+  G+ PD Y+
Sbjct: 463  EGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYT 522

Query: 380  YSTVAAGLSKLNRLEEAKGLLSSMVEKGLPLNTVTYTILIKLHCKEGNIDEAKRTLLEME 201
            Y+++  G    + ++EA  L S M  KGL  N+VTYT++I    K G  DEA     E++
Sbjct: 523  YTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIK 582

Query: 200  KKRVKPNVVTYNCLL 156
            +K    +   Y  L+
Sbjct: 583  RKGYTIDNKVYTALI 597



 Score =  125 bits (314), Expect = 3e-26
 Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1076 GEYEMLKIFYKRMVECNVNITVYALTLVIGEYCKRGEVDEARKL--LMIGSRVKPNGRTY 903
            GE    +I    M    VNIT      +I  YC++G +DEA  +  +M     + +  T 
Sbjct: 359  GEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTC 418

Query: 902  AMFIEAYMKRMDFGSVDEVLTEMGKSGVSLNTAGYTILVEGYASSGKFEEAERVFDELRE 723
                  + +   +    + L  M + GV L+T  YT L++ Y   G  EEA+R+F E+  
Sbjct: 419  NTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSS 478

Query: 722  KGVMGDVQLYSVMIKWLCRFSKMKRAFALFDELVEKGLVPNAHTYGSLIDGLCKVGKMDA 543
            K V  +   Y+VMI   C+  K+K A  L+  +   G+ P+++TY SLI G C    +D 
Sbjct: 479  KEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDE 538

Query: 542  AEVLLNEMQMDGIDSNLVIFNTLIGGYCKQGRIDKAWSLQDIMERKGLKPDVYSYSTVAA 363
            A  L +EM + G+D N V +  +I G  K G+ D+A+ L D ++RKG   D   Y+ +  
Sbjct: 539  AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALIG 598

Query: 362  GL 357
             +
Sbjct: 599  SM 600