BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00023356
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    62   4e-11
emb|CAN69706.1| hypothetical protein VITISV_037595 [Vitis vinifera]    61   7e-10
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc...    54   2e-09
emb|CAN82859.1| hypothetical protein VITISV_025377 [Vitis vinifera]    64   3e-09
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    54   3e-09

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 61.6 bits (148), Expect(2) = 4e-11
 Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = -3

Query: 333 NILHVPSITKNLLSVSQLTNHNNFFLEFHSSCCYVTDMQGK-VLLKGTIDQGLYKFHPTT 157
           ++LHVPS  KNL+SV +LTN N+ F+EFHSS   + D Q K VLL G    GLY   P  
Sbjct: 381 SVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHP 440

Query: 156 SFAFSNKKPTFASVGERTSLDVWH 85
                  K  F+S   R  L+ WH
Sbjct: 441 DLRL---KHNFSST--RVPLEHWH 459



 Score = 30.8 bits (68), Expect(2) = 4e-11
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -2

Query: 85  QRLGHPAFSIVSKVVSQSKLPVVQSSSS 2
           +RLGHP+  IV +V+S + LP + ++S+
Sbjct: 460 KRLGHPSRDIVHRVISNNNLPCLSNNST 487


>emb|CAN69706.1| hypothetical protein VITISV_037595 [Vitis vinifera]
          Length = 431

 Score = 60.8 bits (146), Expect(2) = 7e-10
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = -3

Query: 327 LHVPSITKNLLSVSQLTNHNNFFLEFHSSCCYVTD-MQGKVLLKGTIDQGLYKFHPTTSF 151
           L VP++ KN++SV   T+ NN ++EFH S   V + + G +LL+G+ +  +Y F  +   
Sbjct: 235 LCVPNLKKNMISVHHFTSQNNVYVEFHPSYFLVKEPITGAILLRGSCENDIYIFPESLVG 294

Query: 150 AFSNKKPTFASVGERTSLDVWH 85
            FS K    A+V ERTSLD WH
Sbjct: 295 NFSQK---VANVHERTSLDGWH 313



 Score = 27.3 bits (59), Expect(2) = 7e-10
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 85  QRLGHPAFSIVSKVVSQSKLP 23
           +RLGHP++ IV  +VS   LP
Sbjct: 314 KRLGHPSYPIVKNLVSTFSLP 334


>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 807

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = -3

Query: 333 NILHVPSITKNLLSVSQLTNHNNFFLEFHSSCCYVTD-MQGKVLLKGTIDQGLYKFHPTT 157
           N+LHVP  TKNL+S S+L   N  FLE HS    V D     ++LKG   +GLY F    
Sbjct: 349 NVLHVPHATKNLISASRLAEDNYVFLEIHSKYFLVKDRAMRNIILKGRCRKGLYPFPSED 408

Query: 156 SFAFSNKKPTFASVGERTS 100
           +    +  P+FA    R S
Sbjct: 409 AKYVCSVAPSFARWHSRLS 427



 Score = 32.0 bits (71), Expect(2) = 2e-09
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -2

Query: 82  RLGHPAFSIVSKVVSQSKLPVVQSSS 5
           RL HP   IVS+VV+Q+KLP  +S S
Sbjct: 425 RLSHPTTPIVSRVVNQNKLPCQKSHS 450


>emb|CAN82859.1| hypothetical protein VITISV_025377 [Vitis vinifera]
          Length = 1578

 Score = 63.5 bits (153), Expect(2) = 3e-09
 Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -3

Query: 327 LHVPSITKNLLSVSQLTNHNNFFLEFHSSCCYVTD-MQGKVLLKGTIDQGLYKFHPTTSF 151
           L VP I KNL+SV   T HNN +LEFH +   V D + G +LLKG  + G+Y   P    
Sbjct: 321 LFVPRIQKNLISVHHFTKHNNVYLEFHPTYFLVKDQITGAILLKGKCEDGVY---PFPKH 377

Query: 150 AFSNKKPTFASVGERTSLDVWH 85
              N K   A V ERT+ D WH
Sbjct: 378 LPPNSKNVVAYVHERTTPDGWH 399



 Score = 22.3 bits (46), Expect(2) = 3e-09
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 85  QRLGHPAFSIVSKVVSQSKLP 23
           +RLGHP+  +V+ ++    LP
Sbjct: 400 KRLGHPSSKLVNHLIHVFSLP 420


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 54.3 bits (129), Expect(2) = 3e-09
 Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -3

Query: 327 LHVPSITKNLLSVSQLTNHNNFFLEFHSSCCYVTDMQ-GKVLLKGTIDQGLYKFHPTTSF 151
           L VP+I KNL+SV   T  NN  LEFH +   V D + G++LL+G  + G+Y   P  S 
Sbjct: 357 LCVPTINKNLISVHHFTKQNNVILEFHPTYFLVKDRRTGEILLQGPCENGVY---PMPS- 412

Query: 150 AFSNKKPTFASVGERTSLDVWH 85
             S      A V ERTS+  WH
Sbjct: 413 --SPAATPIAFVHERTSVTGWH 432



 Score = 31.6 bits (70), Expect(2) = 3e-09
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 85  QRLGHPAFSIVSKVVSQSKLPVVQSSS 5
           QRLGHP+F +V++++S   LP     S
Sbjct: 433 QRLGHPSFKVVTRLISSFSLPTTSCLS 459