BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00023182
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    63   3e-08
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...    60   2e-07
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...    60   2e-07
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...    59   5e-07
emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]       59   5e-07

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
 Frame = -2

Query: 445 SRYCSFLGLSHDSIFSDSFMSRPRNYCSFVSNDVFPEIGFRKDWIFCSKNRVLRRKNIYC 266
           SR  SFLG S D IF +  M       S  S+  F E+GFR+     S+   + R +  C
Sbjct: 65  SRRYSFLGFSQDLIFPE-IMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVGRPSFGC 123

Query: 265 LKHNVNTYGVCHTSNASVAEEVEGVSNSDVEEMAXXXXXXXXXXXXXXXXVQELLKELRD 86
           L++ +   G C  S ASVA   E VS++DVEE                  +QELL E++ 
Sbjct: 124 LRNQMGFSGFCPKSYASVA---EAVSSTDVEE-----------DVSASDEIQELLGEMKK 169

Query: 85  QEKRSA-AKRRRQFRISSGMGYKKYKALR 2
           +EKR    KRR + ++  GM   +Y  LR
Sbjct: 170 EEKRQVNFKRREKLKMERGMEQGRYLRLR 198


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 57/153 (37%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
 Frame = -2

Query: 457 YSVFSRYCSFLGLSHDSIFSDSFMSRPRNYCSFVSNDVFPEIGFRKDWIFCSKNRVLRRK 278
           +S  +R  SFLG   DSIF D+   R     S  SN V   +GF+    +   +  L R 
Sbjct: 53  FSSKNRTYSFLGFGQDSIFKDNTKFRSLIPIS-CSNIV---MGFQNLGEYLPGDEFLSRP 108

Query: 277 NIYCLKHNVNTYGVCHTSNASVAEEVEGVSNSDVEEMAXXXXXXXXXXXXXXXXVQELLK 98
            I   K+ VN    C  S ASVAE V  VS++D EE                  V ELL 
Sbjct: 109 LI---KNQVNNNFCCRKSYASVAEAV-AVSSTDAEE-----------DVSVVDEVHELLT 153

Query: 97  ELRDQEKRSAAKRRRQFR-ISSGMGYKKYKALR 2
           EL+ +EK+  A RRR+ R ++SGMG++KY+ L+
Sbjct: 154 ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLK 186


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 57/153 (37%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
 Frame = -2

Query: 457 YSVFSRYCSFLGLSHDSIFSDSFMSRPRNYCSFVSNDVFPEIGFRKDWIFCSKNRVLRRK 278
           +S  +R  SFLG   DSIF D+   R     S  SN V   +GF+    +   +  L R 
Sbjct: 53  FSSKNRTYSFLGFGQDSIFKDNTKFRSLIPIS-CSNIV---MGFQNLGEYLPGDEFLSRP 108

Query: 277 NIYCLKHNVNTYGVCHTSNASVAEEVEGVSNSDVEEMAXXXXXXXXXXXXXXXXVQELLK 98
            I   K+ VN    C  S ASVAE V  VS++D EE                  V ELL 
Sbjct: 109 LI---KNQVNNNFCCRKSYASVAEAV-AVSSTDAEE-----------DVSVVDEVHELLT 153

Query: 97  ELRDQEKRSAAKRRRQFR-ISSGMGYKKYKALR 2
           EL+ +EK+  A RRR+ R ++SGMG++KY+ L+
Sbjct: 154 ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLK 186


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 57/154 (37%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
 Frame = -2

Query: 457 YSVFSRYCSFLGLSHDSIFSDSFMSRPRNYCSFVSNDVFPEIGFRKDWIFCSKNRVLRRK 278
           +S  +R  SFLG   DS+F D+   R     S  SN V   +GF+    +   +  L R 
Sbjct: 53  FSSKNRTYSFLGFGQDSVFKDNTKFRSLIPIS-CSNIV---MGFQNLGEYLPGDEFLSRP 108

Query: 277 NIYCLKHNVNTYGVC-HTSNASVAEEVEGVSNSDVEEMAXXXXXXXXXXXXXXXXVQELL 101
               LK+ VN+   C   S ASVAE V  VS++D EE                  VQELL
Sbjct: 109 ---LLKNQVNSNDFCCRKSYASVAEAV-AVSSTDAEE-----------DVSVVDEVQELL 153

Query: 100 KELRDQEKRSAAKRRRQFR-ISSGMGYKKYKALR 2
            EL+ +EK+  A RRR+ R ++SGMG++KY+ L+
Sbjct: 154 TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLK 187


>emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 1036

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
 Frame = -2

Query: 445 SRYCSFLGLSHDSIFSDSFMSRPRNYCSFVSNDVFPEIGFRKDWIFCSKNRVLRRKNIYC 266
           SR  SFLG +HD  FSD    RP     F  N  F E+GF ++     K  +  R    C
Sbjct: 64  SRSYSFLGGTHDCGFSDRLKFRPFEL-GFCKNRSFSEVGFCREGGSLVKEGIGERPVSGC 122

Query: 265 LKHNVNTYGVCHTSNASVAEEVEGVSNSDVEEMAXXXXXXXXXXXXXXXXVQELLKELRD 86
           L + +N   VC    ASV  E E  S++D+E+                  +QEL++E+R 
Sbjct: 123 LGNRLNFNVVCPKGYASVV-EAEVDSSTDLED-----------DVSVFDEIQELVEEMRK 170

Query: 85  QEKRS--AAKRRRQFRISSGMGYKKYKALR 2
           +EKR+      +RQ ++ +GM   KY+ LR
Sbjct: 171 EEKRAKWRESHQRQQKMVAGMPLYKYQKLR 200