BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00022900
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   105   5e-21
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    72   4e-11
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...    69   3e-10
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...    64   1e-08
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...    64   2e-08

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  105 bits (261), Expect = 5e-21
 Identities = 51/111 (45%), Positives = 76/111 (68%)
 Frame = -2

Query: 347 KIEDEDAALILLASLPMSYENFRESMTNDKDSLSLEEMRFAIHNRDLHISCSSGSSTTVG 168
           KIEDEDAALILL SLPMS+ENF +S    KD++SLEE+R A+H+R+L    ++G+ST + 
Sbjct: 135 KIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELRHK-ANGTSTDIQ 193

Query: 167 PFGALVANTSGDRPVERFSSRPGRGSRKTDRCNFCRELGYWKRDCPKLRNE 15
           P G   ++  G +   + +    +G++  D CN+C+E G+WK DCPK + +
Sbjct: 194 PSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCKEKGHWKFDCPKKKKQ 244


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
 Frame = -2

Query: 347 KIEDEDAALILLASLPMSYENFRESMTNDKDSLSLEEMRFAIHNRDLHISCSSGSSTTVG 168
           K EDED AL+LL+SLP  +E+   ++ + K+++SL+ +  A+++ +L       + +T  
Sbjct: 79  KFEDEDLALMLLSSLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKSTTS 138

Query: 167 PFGALVANTSGDRPVER--FSSRPGRGSRKTDRCNFCRELGYWKRDCPKLRNEQR 9
               +       +  ER   S   GR   K D C FC E G+WK+DCPKL+ +++
Sbjct: 139 EEALVARGRQQSQTKERRGMSKSKGRAVAK-DECAFCHEKGHWKKDCPKLQKKEK 192


>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
 Frame = -2

Query: 347 KIEDEDAALILLASLPMSYENFRESMTNDKDSLSLEEMRFAIHNRDLHISCSSGSSTTVG 168
           K EDED AL+L++SLP  +E+   ++ + KD++SL+ +  A+++ +L       + +T  
Sbjct: 118 KFEDEDLALMLVSSLPDEFEHLETTLLHGKDNVSLDVVCSALYSHELRKQDKMKTKSTTS 177

Query: 167 PFGALVANTSGDRPVERFSSRPGRGS-RKTDRCNFCRELGYWKRDCPKLRNEQR 9
               +       +  ER      +G     D C FC E G+WK+DCPKL+ +++
Sbjct: 178 EEALVTRGGQQSQTKERRGMCKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEK 231


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
 Frame = -2

Query: 347 KIEDEDAALILLASLPMSYENFRESMTNDKDSLSLEEMRFAIHNRD-------LHISCSS 189
           + +DED  L+LL SLP SYENFR+++   +D L+L E+  A+ NR+          S S 
Sbjct: 139 QFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSK 198

Query: 188 GSSTTV-GPFGALVANTSGDRPVERFSSRPGRGSRKTDRCNFCRELGYWKRDCPKLRNEQ 12
           G +  V G       N S DR  ++  SR    SR    C +C++  ++ ++C KL+N++
Sbjct: 199 GEALQVKGRSEQRTYNDSNDR--DKSKSRGRSKSRGKKFCKYCKKKIHFIKECWKLQNKE 256

Query: 11  R 9
           +
Sbjct: 257 K 257


>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 415

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 37/114 (32%), Positives = 60/114 (52%)
 Frame = -2

Query: 347 KIEDEDAALILLASLPMSYENFRESMTNDKDSLSLEEMRFAIHNRDLHISCSSGSSTTVG 168
           K++DED A+ILL SLP+SYE+   ++T+ KD++  EE+  ++  RDL  S     +T   
Sbjct: 139 KLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSLLARDLRRS-KKNEATKAS 197

Query: 167 PFGALVANTSGDRPVERFSSRPGRGSRKTDRCNFCRELGYWKRDCPKLRNEQRG 6
              +L+     D       +   +   K  RC  C E G+ +R+CP L+  + G
Sbjct: 198 QGKSLLVKDKHDH-----EAGVSKSKEKGARCYKCHEFGHIRRNCPLLKKRKGG 246